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1 <!DOCTYPE html>
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2 <html>
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3 <head>
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4 <meta charset="UTF-8">
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5 <meta name=generator content="blast2html; see https://github.com/thehyve/blast2html/">
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6
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7 <title>Blast output</title>
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8
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9 <style>
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10 body {
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11 color: #333333;
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12 font-family: Arial,Sans-Serif;
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13 }
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14
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15 :link {
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16 color: #336699;
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17 }
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18
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19 .right {
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20 float: right;
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21 }
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22
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23 /* Galaxy with html sanitization enabled strips the header of this html page. If so, show the user a warning.*/
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24 #strip_html_warning {
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25 display: none;
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26 }
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27
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28 #content {
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29 margin: 0 2em;
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30 padding: 0.5em;
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31 border: 1px solid #888888;
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32 background-color: #d3dff5;
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33 }
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34
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35 h1, h2, h3, h4, h5, h6 {
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36 color: #2A6979;
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37 font-family: arial,verdana,sans-serif;
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38 letter-spacing: -1px;
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39 margin: 1.2em 0 0.3em;
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40 }
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41
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42 h1 {
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43 border-bottom: 1px solid #CCCCCC;
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44 font-size: 150%;
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45 padding-bottom: 0.1em;
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46 }
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47
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48 h2 {
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49 font-size: 120%;
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50 font-weight: bold;
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51 }
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52
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53 h4.darkHeader {
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54 color: #4D4D4D;
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55 letter-spacing: 0;
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56 font-weight: bold;
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57 }
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58
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59 #nodata {
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60 font-weight: bold;
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61 }
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62
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63 .index {
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64 margin-bottom: 3em;
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65 }
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66 .index div.indexentry {
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67 margin: 1.2em 1.6em;
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68 font-weight: bold;
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69 font-size: 100%;
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70 }
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71
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72 .headerdata {
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73 font-size: 90%;
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74 }
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75 .headerdata .param {
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76 font-weight: bold;
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77 text-align: right;
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78 padding: 0 1em;
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79 }
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80
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81 .grey {
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82 background-color: #eeeeee;
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83 border: 1px solid #cccccc;
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84 padding: 1em;
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85 }
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86
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87 .white {
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88 background-color: white;
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89 border: 1px solid #cccccc;
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90 padding: 1.5em 2%;
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91 }
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92
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93 .graphicrow {
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94 clear: left;
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95 width: 100%;
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96 }
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97
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98 .graphicitem {
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99 float: left;
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100 }
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101
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102
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103
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104 .graphics .grey {
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105 text-align: center;
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106 }
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107
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108 .graphic {
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109 background-color: white;
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110 border: 2px solid black;
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111 padding: 1.5em;
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112 margin: auto;
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113 }
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114
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115 .centered, .defline, div.legend, div.tablewrapper {
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116 margin-left: auto;
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117 margin-right: auto;
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118 }
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119
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120 .defline {
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121 background-color: white;
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122 border: 1px solid black;
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123 margin: .5em auto;
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124 padding-left: .2em;
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125 padding-right: .2em;
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126 max-width: 50em;
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127 text-align: left;
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128 height: 2.8em;
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129 overflow: hidden;
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130 }
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131
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132 div.legend {
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133 max-width: 40em;
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134 }
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135 div.legend div {
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136 width: 100%;
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137 color: white;
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138 font-weight: bold;
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139 border-spacing: 0;
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140 }
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141 div.legend div .graphicitem {
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142 width: 20%;
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143 padding: 0;
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144 margin: 0;
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145 border: none;
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146 }
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147
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148 div.tablewrapper {
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149 width: 50%;
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150 min-width: 60em;
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151 }
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152
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153 /* For small widths we give the graphic 100% */
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154 @media (max-width: 72.5em) {
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155 div.tablewrapper {
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156 width: 100%;
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157 min-width: 0px;
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158 }
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159 }
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160
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161 .scale {
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162 width: 100%;
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163 margin: .5em 0;
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164 font-weight: bold;
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165 }
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166 .scale div {
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167 color: red;
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168 text-align: left;
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169 }
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170 .scale .graphicrow {
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171 margin: .5em 0 .5em 0;
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172 color: white;
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173 }
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174 .scale .graphicitem {
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175 position: relative;
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176 }
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177 .scale .graphicitem div {
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178 margin: 0 1px;
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179 padding: 0 2px;
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180 text-align: right;
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181 background-color: red;
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182 color: white;
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183 }
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184 .scale .graphicitem:first-child div {
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185 margin-left: 0px;
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186 }
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187 .scale .graphicitem:last-child div {
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188 margin-right: 0px;
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189 }
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190 .scale .graphicitem .lastlabel {
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191 position: absolute;
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192 top: 0px;
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193 left: 100%;
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194 background-color: transparent;
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195 color: red;
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196 }
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197
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198 a.matchresult {
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199 display: block;
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200 margin: 0;
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201 padding: 0;
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202 }
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203 div.matchrow {
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204 margin-top: 4px;
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205 }
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206 div.matchrow, div.matchitem {
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207 height: 4px;
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208 }
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209
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210
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211 table.descriptiontable {
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212 font-size: 85%;
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213 border: 1px solid #97b0c8;
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214 border-spacing: 0;
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215 color: #222222;
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216 line-height: 1.3em;
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217 background-color: white;
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218 }
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219 table.descriptiontable col:first-child {
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220 width: 100%;
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221 }
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222 table.descriptiontable tr:hover {
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223 background-color: #D5DEE3;
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224 }
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225 table.descriptiontable th {
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226 color: #14376C;
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227 font-weight: normal;
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228 background-color: #F0F0F0;
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229 background: linear-gradient(#FFFFFF, #F0F0F0);
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230 border-bottom: 1px solid #D4DFE9;
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231 border-right: 1px solid #CFCFCF;
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232 border-left: 0px solid black;
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233 border-top: 0px solid black;
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234 }
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235 table.descriptiontable td {
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236 overflow: hidden;
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237 text-align: center;
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238 padding: .4em .8em;
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239 }
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240 table.descriptiontable td div {
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241 width: 1em;
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242 overflow: visible;
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243 white-space: nowrap;
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244 text-align: left;
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245 }
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246
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247
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248
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249 .alignments .white {
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250 padding: 1.5em 1em;
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251 }
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252
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253 .alignment {
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254 border-top: 1px solid black;
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255 padding-left: 1em;
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256 padding-right: 1em;
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257 }
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258
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259 div.linkheader {
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260 padding-top: .2em;
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261 font-size: 85%;
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262 color: #14376C;
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263 }
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264 div.linkheader a.linkheader {
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265 margin-right: 1em;
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266 }
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267 div.linkheader .right a {
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268 text-decoration: none;
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269 }
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270
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271 .title .hittitle {
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272 color: #222222;
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273 margin-bottom: .3em;
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274 }
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275 .title .titleinfo {
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276 font-size: 80%;
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277 margin-top: 0;
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278 margin-bottom: .3em;
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279 }
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280 .title .titleinfo .b {
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281 color: #606060;
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282 font-weight: bold;
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283 font-size: 90%;
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284 }
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285
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286 .moretitles {
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287 margin: 1.2em;
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288 }
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289 .moretitles .titleinfo {
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290 margin: 0;
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291 padding: 0;
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292 }
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293 .moretitles .hittitle {
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294 margin: .4em 0 .2em 0;
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295 padding: 0;
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296 }
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297
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298 a.showmoretitles {
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299 font-size: 75%;
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300 color: #336699;
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301 font-weight: bold;
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302 margin-top: 0;
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303 }
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304 a.showmoretitles:hover {
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305 }
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306
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307 .hotspot {
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308 color: #606060;
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309 font-family: verdana, arial, sans-serif;
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310 margin-bottom: 2.5em;
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311 }
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312
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313 .hotspot p.range {
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314 font-size: 70%;
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315 margin-top: 0;
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316 margin-top: 1em;
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317 margin-bottom: .2em;
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318 }
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319 .hotspot p.range span.range {
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320 font-weight: bold;
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321 }
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322 .hotspot p.range a.range {
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323 margin-left: .5em;
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324 }
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325
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326 table.hotspotstable {
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327 border-top: 1px solid;
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328 border-bottom: 1px solid;
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329 text-align: left;
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330 border-collapse: collapse;
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331 }
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332 table.hotspotstable th, table.hotspotstable td {
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333 padding: .1em 1em;
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334 }
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335 table.hotspotstable th {
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336 font-size: 70%;
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337 }
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338 table.hotspotstable td {
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339 min-width: 7em;
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340 color: #222222;
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341 font-size: 80%;
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342 }
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343
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344 pre.alignmentgraphic {
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345 color: #222222;
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346 }
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347
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348 footer {
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349 text-align: center;
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350 color: #cccccc;
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351 font-size: 70%;
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352 margin-top: 1em;
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353 }
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354 footer :link {
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355 color: #5588cc;
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356 }
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357
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358 </style>
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359
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360 <script type="text/javascript">
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361 function toggle_visibility(id) {
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362 var e = document.getElementById(id);
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363 if(e.style.display != 'block')
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364 e.style.display = 'block';
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365 else
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366 e.style.display = 'none';
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367 }
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368 </script>
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369
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370 </head>
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371
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372
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373 <body>
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374
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375 <div id="strip_html_warning">
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376 <!-- This div should be hidden by the header css block. Galaxy
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377 strips all css, breaking this page but making this warning
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378 visible. This warning contains some ugly old skool tabular html
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379 layout that is not stripped. -->
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380 <table bgcolor="#FFE5C9"><tr><td><font color="red"><b>
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381 <font size=5><center>This html page seems to have been stripped by Galaxy.</center></font>
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382 Disable Galaxy's html sanitization feature to view the full page (see <font face=monospace>sanitize_all_html</font> in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.
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383 </b></font></td></tr></table>
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384 </div>
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385
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386 <div id=content>
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387
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388
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389 <section class=index>
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390 <h1>Queries</h1>
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391
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392 <div class=indexentry><a href="#match1">
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393 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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394 (20 letters, 0 hits)
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395 </a></div>
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396 <div class=indexentry><a href="#match2">
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397 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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398 (20 letters, 0 hits)
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399 </a></div>
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400 <div class=indexentry><a href="#match3">
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401 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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402 (20 letters, 1 hits)
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403 </a></div>
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404 <div class=indexentry><a href="#match4">
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405 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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406 (20 letters, 0 hits)
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407 </a></div>
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408 <div class=indexentry><a href="#match5">
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409 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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410 (20 letters, 0 hits)
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411 </a></div>
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412 <div class=indexentry><a href="#match6">
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413 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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414 (20 letters, 1 hits)
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415 </a></div>
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416 <div class=indexentry><a href="#match7">
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417 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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418 (20 letters, 0 hits)
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419 </a></div>
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420 <div class=indexentry><a href="#match8">
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421 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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422 (20 letters, 0 hits)
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423 </a></div>
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424 <div class=indexentry><a href="#match9">
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425 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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426 (20 letters, 0 hits)
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427 </a></div>
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428 <div class=indexentry><a href="#match10">
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429 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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430 (20 letters, 0 hits)
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431 </a></div>
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432 <div class=indexentry><a href="#match11">
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433 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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434 (20 letters, 0 hits)
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435 </a></div>
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436 <div class=indexentry><a href="#match12">
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437 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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438 (20 letters, 0 hits)
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439 </a></div>
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440 <div class=indexentry><a href="#match13">
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441 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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442 (20 letters, 0 hits)
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443 </a></div>
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444 <div class=indexentry><a href="#match14">
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445 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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446 (20 letters, 0 hits)
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447 </a></div>
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448 <div class=indexentry><a href="#match15">
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449 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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450 (20 letters, 0 hits)
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451 </a></div>
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452 <div class=indexentry><a href="#match16">
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453 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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454 (20 letters, 0 hits)
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455 </a></div>
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456 <div class=indexentry><a href="#match17">
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|
|
457 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
458 (20 letters, 0 hits)
|
|
|
459 </a></div>
|
|
|
460 <div class=indexentry><a href="#match18">
|
|
|
461 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
462 (20 letters, 1 hits)
|
|
|
463 </a></div>
|
|
|
464 <div class=indexentry><a href="#match19">
|
|
|
465 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
466 (20 letters, 1 hits)
|
|
|
467 </a></div>
|
|
|
468 <div class=indexentry><a href="#match20">
|
|
|
469 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
470 (20 letters, 0 hits)
|
|
|
471 </a></div>
|
|
|
472 <div class=indexentry><a href="#match21">
|
|
|
473 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
474 (20 letters, 0 hits)
|
|
|
475 </a></div>
|
|
|
476 <div class=indexentry><a href="#match22">
|
|
|
477 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
478 (20 letters, 1 hits)
|
|
|
479 </a></div>
|
|
|
480 <div class=indexentry><a href="#match23">
|
|
|
481 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
482 (20 letters, 0 hits)
|
|
|
483 </a></div>
|
|
|
484 <div class=indexentry><a href="#match24">
|
|
|
485 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
486 (20 letters, 0 hits)
|
|
|
487 </a></div>
|
|
|
488 <div class=indexentry><a href="#match25">
|
|
|
489 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
490 (24 letters, 0 hits)
|
|
|
491 </a></div>
|
|
|
492 <div class=indexentry><a href="#match26">
|
|
|
493 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
494 (24 letters, 0 hits)
|
|
|
495 </a></div>
|
|
|
496 <div class=indexentry><a href="#match27">
|
|
|
497 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
498 (24 letters, 0 hits)
|
|
|
499 </a></div>
|
|
|
500 <div class=indexentry><a href="#match28">
|
|
|
501 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
502 (24 letters, 0 hits)
|
|
|
503 </a></div>
|
|
|
504 <div class=indexentry><a href="#match29">
|
|
|
505 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
506 (24 letters, 0 hits)
|
|
|
507 </a></div>
|
|
|
508 <div class=indexentry><a href="#match30">
|
|
|
509 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
510 (24 letters, 0 hits)
|
|
|
511 </a></div>
|
|
|
512 <div class=indexentry><a href="#match31">
|
|
|
513 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
514 (24 letters, 0 hits)
|
|
|
515 </a></div>
|
|
|
516 <div class=indexentry><a href="#match32">
|
|
|
517 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
518 (24 letters, 0 hits)
|
|
|
519 </a></div>
|
|
|
520 <div class=indexentry><a href="#match33">
|
|
|
521 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
522 (20 letters, 0 hits)
|
|
|
523 </a></div>
|
|
|
524 <div class=indexentry><a href="#match34">
|
|
|
525 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
526 (20 letters, 0 hits)
|
|
|
527 </a></div>
|
|
|
528 <div class=indexentry><a href="#match35">
|
|
|
529 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
530 (20 letters, 0 hits)
|
|
|
531 </a></div>
|
|
|
532 <div class=indexentry><a href="#match36">
|
|
|
533 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
534 (20 letters, 0 hits)
|
|
|
535 </a></div>
|
|
|
536 <div class=indexentry><a href="#match37">
|
|
|
537 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
538 (20 letters, 0 hits)
|
|
|
539 </a></div>
|
|
|
540 <div class=indexentry><a href="#match38">
|
|
|
541 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
542 (20 letters, 0 hits)
|
|
|
543 </a></div>
|
|
|
544 <div class=indexentry><a href="#match39">
|
|
|
545 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
546 (20 letters, 0 hits)
|
|
|
547 </a></div>
|
|
|
548 <div class=indexentry><a href="#match40">
|
|
|
549 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
550 (20 letters, 0 hits)
|
|
|
551 </a></div>
|
|
|
552 <div class=indexentry><a href="#match41">
|
|
|
553 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
554 (25 letters, 0 hits)
|
|
|
555 </a></div>
|
|
|
556 <div class=indexentry><a href="#match42">
|
|
|
557 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
558 (25 letters, 0 hits)
|
|
|
559 </a></div>
|
|
|
560 <div class=indexentry><a href="#match43">
|
|
|
561 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
562 (25 letters, 0 hits)
|
|
|
563 </a></div>
|
|
|
564 <div class=indexentry><a href="#match44">
|
|
|
565 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
566 (25 letters, 0 hits)
|
|
|
567 </a></div>
|
|
|
568 <div class=indexentry><a href="#match45">
|
|
|
569 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
570 (25 letters, 0 hits)
|
|
|
571 </a></div>
|
|
|
572 <div class=indexentry><a href="#match46">
|
|
|
573 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
574 (25 letters, 0 hits)
|
|
|
575 </a></div>
|
|
|
576 <div class=indexentry><a href="#match47">
|
|
|
577 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
578 (25 letters, 1 hits)
|
|
|
579 </a></div>
|
|
|
580 <div class=indexentry><a href="#match48">
|
|
|
581 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
582 (25 letters, 1 hits)
|
|
|
583 </a></div>
|
|
|
584 <div class=indexentry><a href="#match49">
|
|
|
585 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
586 (74 letters, 0 hits)
|
|
|
587 </a></div>
|
|
|
588 <div class=indexentry><a href="#match50">
|
|
|
589 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
590 (74 letters, 0 hits)
|
|
|
591 </a></div>
|
|
|
592 <div class=indexentry><a href="#match51">
|
|
|
593 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
594 (74 letters, 0 hits)
|
|
|
595 </a></div>
|
|
|
596 <div class=indexentry><a href="#match52">
|
|
|
597 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
598 (74 letters, 0 hits)
|
|
|
599 </a></div>
|
|
|
600 <div class=indexentry><a href="#match53">
|
|
|
601 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
602 (74 letters, 0 hits)
|
|
|
603 </a></div>
|
|
|
604 <div class=indexentry><a href="#match54">
|
|
|
605 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
606 (74 letters, 0 hits)
|
|
|
607 </a></div>
|
|
|
608 <div class=indexentry><a href="#match55">
|
|
|
609 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
610 (74 letters, 1 hits)
|
|
|
611 </a></div>
|
|
|
612 <div class=indexentry><a href="#match56">
|
|
|
613 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
614 (74 letters, 1 hits)
|
|
|
615 </a></div>
|
|
|
616
|
|
|
617 </section>
|
|
|
618
|
|
|
619
|
|
|
620 <section class=match id=match1>
|
|
|
621
|
|
|
622 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
623
|
|
|
624 <section class=header>
|
|
|
625
|
|
|
626 <table class=headerdata>
|
|
|
627 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
628 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
629 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
630 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
631 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
632 </table>
|
|
|
633
|
|
|
634 </section>
|
|
|
635
|
|
|
636 <section>
|
|
|
637 <h2>No Hits</h2>
|
|
|
638 <div class=grey>
|
|
|
639 <table class=headerdata>
|
|
|
640 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
641 </table>
|
|
|
642 </div>
|
|
|
643 </section>
|
|
|
644 </section>
|
|
|
645
|
|
|
646 <section class=match id=match2>
|
|
|
647
|
|
|
648 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
649
|
|
|
650 <section class=header>
|
|
|
651
|
|
|
652 <table class=headerdata>
|
|
|
653 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
654 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
655 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
656 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
657 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
658 </table>
|
|
|
659
|
|
|
660 </section>
|
|
|
661
|
|
|
662 <section>
|
|
|
663 <h2>No Hits</h2>
|
|
|
664 <div class=grey>
|
|
|
665 <table class=headerdata>
|
|
|
666 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
667 </table>
|
|
|
668 </div>
|
|
|
669 </section>
|
|
|
670 </section>
|
|
|
671
|
|
|
672 <section class=match id=match3>
|
|
|
673
|
|
|
674 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
675
|
|
|
676 <section class=header>
|
|
|
677
|
|
|
678 <table class=headerdata>
|
|
|
679 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
680 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
681 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
682 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
683 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
684 </table>
|
|
|
685
|
|
|
686 </section>
|
|
|
687
|
|
|
688
|
|
|
689 <section class=graphics>
|
|
|
690 <h2>Graphic Summary</h2>
|
|
|
691
|
|
|
692 <div class=grey>
|
|
|
693 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
694
|
|
|
695 <div class=defline id=defline3>
|
|
|
696 Mouse-over to show defline and scores, click to show alignments
|
|
|
697 </div>
|
|
|
698
|
|
|
699 <div class=graphic>
|
|
|
700 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
701 <div class=legend><div class=graphicrow>
|
|
|
702 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
703 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
704 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
705 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
706 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
707 </div></div>
|
|
|
708 <div style="clear: left"></div>
|
|
|
709
|
|
|
710 <div class=tablewrapper>
|
|
|
711
|
|
|
712 <div class=scale>
|
|
|
713 <div>query:</div>
|
|
|
714 <div class=graphicrow>
|
|
|
715 <div>
|
|
|
716 <div class=graphicitem style="width: 10%">
|
|
|
717 <div>2</div>
|
|
|
718 </div>
|
|
|
719 <div class=graphicitem style="width: 10%">
|
|
|
720 <div>4</div>
|
|
|
721 </div>
|
|
|
722 <div class=graphicitem style="width: 10%">
|
|
|
723 <div>6</div>
|
|
|
724 </div>
|
|
|
725 <div class=graphicitem style="width: 10%">
|
|
|
726 <div>8</div>
|
|
|
727 </div>
|
|
|
728 <div class=graphicitem style="width: 10%">
|
|
|
729 <div>10</div>
|
|
|
730 </div>
|
|
|
731 <div class=graphicitem style="width: 10%">
|
|
|
732 <div>12</div>
|
|
|
733 </div>
|
|
|
734 <div class=graphicitem style="width: 10%">
|
|
|
735 <div>14</div>
|
|
|
736 </div>
|
|
|
737 <div class=graphicitem style="width: 10%">
|
|
|
738 <div>16</div>
|
|
|
739 </div>
|
|
|
740 <div class=graphicitem style="width: 10%">
|
|
|
741 <div>18</div>
|
|
|
742 </div>
|
|
|
743 <div class=graphicitem style="width: 10%">
|
|
|
744 <div>20</div>
|
|
|
745 </div>
|
|
|
746 </div>
|
|
|
747 </div>
|
|
|
748 <div style="clear: left"></div>
|
|
|
749 </div>
|
|
|
750
|
|
|
751 <a class=matchresult
|
|
|
752 href="#hit3-1"
|
|
|
753 onmouseover='document.getElementById("defline3").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
|
|
|
754 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
755 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
|
|
|
756 <div class="matchrow graphicrow">
|
|
|
757 <div class="matchitem graphicitem"
|
|
|
758 style="background-color: black; width: 100%"></div>
|
|
|
759 </div>
|
|
|
760 </a>
|
|
|
761
|
|
|
762 </div>
|
|
|
763 </div>
|
|
|
764 </div>
|
|
|
765 </section>
|
|
|
766
|
|
|
767
|
|
|
768
|
|
|
769 <section class=descriptions>
|
|
|
770 <h2>Descriptions</h2>
|
|
|
771
|
|
|
772 <div class=grey><div class=white>
|
|
|
773 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
774
|
|
|
775 <table class=descriptiontable>
|
|
|
776 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
777 <tr>
|
|
|
778 <th>Description</th>
|
|
|
779 <th>Max score</th>
|
|
|
780 <th>Total score</th>
|
|
|
781 <th>Query cover</th>
|
|
|
782 <th>E value</th>
|
|
|
783 <th>Ident</th>
|
|
|
784 <th>Accession</th>
|
|
|
785 </tr>
|
|
|
786 <tr>
|
|
|
787 <td><div><a href="#hit3-1"
|
|
|
788 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
|
|
|
789 id="description3-1">
|
|
|
790 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
|
|
|
791 </a></div></td>
|
|
|
792 <td>37.4</td>
|
|
|
793 <td>37.4</td>
|
|
|
794 <td>100%</td>
|
|
|
795 <td>7.011e-08</td>
|
|
|
796 <td>100%</td>
|
|
|
797 <td><a href="http://example.com/example-genebank?id=Subject_3">Subject_3</a></td>
|
|
|
798 </tr>
|
|
|
799 </table>
|
|
|
800
|
|
|
801 </div></div>
|
|
|
802 </section>
|
|
|
803
|
|
|
804
|
|
|
805
|
|
|
806 <section class=alignments>
|
|
|
807 <h2>Alignments</h2>
|
|
|
808
|
|
|
809 <div class=grey><div class=white>
|
|
|
810 <div class=alignment id=hit3-1>
|
|
|
811
|
|
|
812 <div class=linkheader>
|
|
|
813 <div class=right><a href="#description3-1">Descriptions</a></div>
|
|
|
814 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_3">Gene Bank</a>
|
|
|
815 </div>
|
|
|
816
|
|
|
817 <div class=title>
|
|
|
818 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
|
|
|
819 <p class=titleinfo>
|
|
|
820 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_3">Subject_3</a>
|
|
|
821 <span class=b>Length:</span> 323
|
|
|
822 <span class=b>Number of Matches:</span> 1
|
|
|
823 </p>
|
|
|
824 </div>
|
|
|
825
|
|
|
826
|
|
|
827 <div class=hotspot id=hotspot3-1-1>
|
|
|
828 <p class=range>
|
|
|
829 <span class=range>Range 1: 200 to 219</span>
|
|
|
830 </p>
|
|
|
831
|
|
|
832 <table class=hotspotstable>
|
|
|
833 <tr>
|
|
|
834 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
835 </tr>
|
|
|
836 <tr>
|
|
|
837 <td>37.4 bits(40)</td>
|
|
|
838 <td>0.0</td>
|
|
|
839 <td>20/20(100%)</td>
|
|
|
840 <td>0/20(0%)</td>
|
|
|
841 <td>Plus/Plus</td>
|
|
|
842 </tr>
|
|
|
843 </table>
|
|
|
844
|
|
|
845 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
|
|
|
846 ||||||||||||||||||||
|
|
|
847 Subject 200 AGCGCGCAAACTAGGATAAA 219</pre>
|
|
|
848 </div>
|
|
|
849
|
|
|
850 </div>
|
|
|
851
|
|
|
852 </div></div>
|
|
|
853 </section>
|
|
|
854 </section>
|
|
|
855
|
|
|
856 <section class=match id=match4>
|
|
|
857
|
|
|
858 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
859
|
|
|
860 <section class=header>
|
|
|
861
|
|
|
862 <table class=headerdata>
|
|
|
863 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
864 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
865 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
866 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
867 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
868 </table>
|
|
|
869
|
|
|
870 </section>
|
|
|
871
|
|
|
872 <section>
|
|
|
873 <h2>No Hits</h2>
|
|
|
874 <div class=grey>
|
|
|
875 <table class=headerdata>
|
|
|
876 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
877 </table>
|
|
|
878 </div>
|
|
|
879 </section>
|
|
|
880 </section>
|
|
|
881
|
|
|
882 <section class=match id=match5>
|
|
|
883
|
|
|
884 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
885
|
|
|
886 <section class=header>
|
|
|
887
|
|
|
888 <table class=headerdata>
|
|
|
889 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
890 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
891 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
892 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
893 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
894 </table>
|
|
|
895
|
|
|
896 </section>
|
|
|
897
|
|
|
898 <section>
|
|
|
899 <h2>No Hits</h2>
|
|
|
900 <div class=grey>
|
|
|
901 <table class=headerdata>
|
|
|
902 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
903 </table>
|
|
|
904 </div>
|
|
|
905 </section>
|
|
|
906 </section>
|
|
|
907
|
|
|
908 <section class=match id=match6>
|
|
|
909
|
|
|
910 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
911
|
|
|
912 <section class=header>
|
|
|
913
|
|
|
914 <table class=headerdata>
|
|
|
915 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
916 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
917 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
918 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
919 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
920 </table>
|
|
|
921
|
|
|
922 </section>
|
|
|
923
|
|
|
924
|
|
|
925 <section class=graphics>
|
|
|
926 <h2>Graphic Summary</h2>
|
|
|
927
|
|
|
928 <div class=grey>
|
|
|
929 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
930
|
|
|
931 <div class=defline id=defline6>
|
|
|
932 Mouse-over to show defline and scores, click to show alignments
|
|
|
933 </div>
|
|
|
934
|
|
|
935 <div class=graphic>
|
|
|
936 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
937 <div class=legend><div class=graphicrow>
|
|
|
938 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
939 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
940 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
941 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
942 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
943 </div></div>
|
|
|
944 <div style="clear: left"></div>
|
|
|
945
|
|
|
946 <div class=tablewrapper>
|
|
|
947
|
|
|
948 <div class=scale>
|
|
|
949 <div>query:</div>
|
|
|
950 <div class=graphicrow>
|
|
|
951 <div>
|
|
|
952 <div class=graphicitem style="width: 10%">
|
|
|
953 <div>2</div>
|
|
|
954 </div>
|
|
|
955 <div class=graphicitem style="width: 10%">
|
|
|
956 <div>4</div>
|
|
|
957 </div>
|
|
|
958 <div class=graphicitem style="width: 10%">
|
|
|
959 <div>6</div>
|
|
|
960 </div>
|
|
|
961 <div class=graphicitem style="width: 10%">
|
|
|
962 <div>8</div>
|
|
|
963 </div>
|
|
|
964 <div class=graphicitem style="width: 10%">
|
|
|
965 <div>10</div>
|
|
|
966 </div>
|
|
|
967 <div class=graphicitem style="width: 10%">
|
|
|
968 <div>12</div>
|
|
|
969 </div>
|
|
|
970 <div class=graphicitem style="width: 10%">
|
|
|
971 <div>14</div>
|
|
|
972 </div>
|
|
|
973 <div class=graphicitem style="width: 10%">
|
|
|
974 <div>16</div>
|
|
|
975 </div>
|
|
|
976 <div class=graphicitem style="width: 10%">
|
|
|
977 <div>18</div>
|
|
|
978 </div>
|
|
|
979 <div class=graphicitem style="width: 10%">
|
|
|
980 <div>20</div>
|
|
|
981 </div>
|
|
|
982 </div>
|
|
|
983 </div>
|
|
|
984 <div style="clear: left"></div>
|
|
|
985 </div>
|
|
|
986
|
|
|
987 <a class=matchresult
|
|
|
988 href="#hit6-1"
|
|
|
989 onmouseover='document.getElementById("defline6").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
|
|
|
990 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
991 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
|
|
|
992 <div class="matchrow graphicrow">
|
|
|
993 <div class="matchitem graphicitem"
|
|
|
994 style="background-color: black; width: 100%"></div>
|
|
|
995 </div>
|
|
|
996 </a>
|
|
|
997
|
|
|
998 </div>
|
|
|
999 </div>
|
|
|
1000 </div>
|
|
|
1001 </section>
|
|
|
1002
|
|
|
1003
|
|
|
1004
|
|
|
1005 <section class=descriptions>
|
|
|
1006 <h2>Descriptions</h2>
|
|
|
1007
|
|
|
1008 <div class=grey><div class=white>
|
|
|
1009 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
1010
|
|
|
1011 <table class=descriptiontable>
|
|
|
1012 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
1013 <tr>
|
|
|
1014 <th>Description</th>
|
|
|
1015 <th>Max score</th>
|
|
|
1016 <th>Total score</th>
|
|
|
1017 <th>Query cover</th>
|
|
|
1018 <th>E value</th>
|
|
|
1019 <th>Ident</th>
|
|
|
1020 <th>Accession</th>
|
|
|
1021 </tr>
|
|
|
1022 <tr>
|
|
|
1023 <td><div><a href="#hit6-1"
|
|
|
1024 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
|
|
|
1025 id="description6-1">
|
|
|
1026 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
|
|
|
1027 </a></div></td>
|
|
|
1028 <td>37.4</td>
|
|
|
1029 <td>37.4</td>
|
|
|
1030 <td>100%</td>
|
|
|
1031 <td>7.011e-08</td>
|
|
|
1032 <td>100%</td>
|
|
|
1033 <td><a href="http://example.com/example-genebank?id=Subject_6">Subject_6</a></td>
|
|
|
1034 </tr>
|
|
|
1035 </table>
|
|
|
1036
|
|
|
1037 </div></div>
|
|
|
1038 </section>
|
|
|
1039
|
|
|
1040
|
|
|
1041
|
|
|
1042 <section class=alignments>
|
|
|
1043 <h2>Alignments</h2>
|
|
|
1044
|
|
|
1045 <div class=grey><div class=white>
|
|
|
1046 <div class=alignment id=hit6-1>
|
|
|
1047
|
|
|
1048 <div class=linkheader>
|
|
|
1049 <div class=right><a href="#description6-1">Descriptions</a></div>
|
|
|
1050 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_6">Gene Bank</a>
|
|
|
1051 </div>
|
|
|
1052
|
|
|
1053 <div class=title>
|
|
|
1054 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
|
|
|
1055 <p class=titleinfo>
|
|
|
1056 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_6">Subject_6</a>
|
|
|
1057 <span class=b>Length:</span> 2457
|
|
|
1058 <span class=b>Number of Matches:</span> 1
|
|
|
1059 </p>
|
|
|
1060 </div>
|
|
|
1061
|
|
|
1062
|
|
|
1063 <div class=hotspot id=hotspot6-1-1>
|
|
|
1064 <p class=range>
|
|
|
1065 <span class=range>Range 1: 2119 to 2138</span>
|
|
|
1066 </p>
|
|
|
1067
|
|
|
1068 <table class=hotspotstable>
|
|
|
1069 <tr>
|
|
|
1070 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1071 </tr>
|
|
|
1072 <tr>
|
|
|
1073 <td>37.4 bits(40)</td>
|
|
|
1074 <td>0.0</td>
|
|
|
1075 <td>20/20(100%)</td>
|
|
|
1076 <td>0/20(0%)</td>
|
|
|
1077 <td>Plus/Plus</td>
|
|
|
1078 </tr>
|
|
|
1079 </table>
|
|
|
1080
|
|
|
1081 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
|
|
|
1082 ||||||||||||||||||||
|
|
|
1083 Subject 2119 AGCGCGCAAACTAGGATAAA 2138</pre>
|
|
|
1084 </div>
|
|
|
1085
|
|
|
1086 </div>
|
|
|
1087
|
|
|
1088 </div></div>
|
|
|
1089 </section>
|
|
|
1090 </section>
|
|
|
1091
|
|
|
1092 <section class=match id=match7>
|
|
|
1093
|
|
|
1094 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1095
|
|
|
1096 <section class=header>
|
|
|
1097
|
|
|
1098 <table class=headerdata>
|
|
|
1099 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1100 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1101 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1102 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1103 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1104 </table>
|
|
|
1105
|
|
|
1106 </section>
|
|
|
1107
|
|
|
1108 <section>
|
|
|
1109 <h2>No Hits</h2>
|
|
|
1110 <div class=grey>
|
|
|
1111 <table class=headerdata>
|
|
|
1112 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1113 </table>
|
|
|
1114 </div>
|
|
|
1115 </section>
|
|
|
1116 </section>
|
|
|
1117
|
|
|
1118 <section class=match id=match8>
|
|
|
1119
|
|
|
1120 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1121
|
|
|
1122 <section class=header>
|
|
|
1123
|
|
|
1124 <table class=headerdata>
|
|
|
1125 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1126 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1127 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1128 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1129 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1130 </table>
|
|
|
1131
|
|
|
1132 </section>
|
|
|
1133
|
|
|
1134 <section>
|
|
|
1135 <h2>No Hits</h2>
|
|
|
1136 <div class=grey>
|
|
|
1137 <table class=headerdata>
|
|
|
1138 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1139 </table>
|
|
|
1140 </div>
|
|
|
1141 </section>
|
|
|
1142 </section>
|
|
|
1143
|
|
|
1144 <section class=match id=match9>
|
|
|
1145
|
|
|
1146 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1147
|
|
|
1148 <section class=header>
|
|
|
1149
|
|
|
1150 <table class=headerdata>
|
|
|
1151 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1152 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1153 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1154 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1155 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1156 </table>
|
|
|
1157
|
|
|
1158 </section>
|
|
|
1159
|
|
|
1160 <section>
|
|
|
1161 <h2>No Hits</h2>
|
|
|
1162 <div class=grey>
|
|
|
1163 <table class=headerdata>
|
|
|
1164 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1165 </table>
|
|
|
1166 </div>
|
|
|
1167 </section>
|
|
|
1168 </section>
|
|
|
1169
|
|
|
1170 <section class=match id=match10>
|
|
|
1171
|
|
|
1172 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1173
|
|
|
1174 <section class=header>
|
|
|
1175
|
|
|
1176 <table class=headerdata>
|
|
|
1177 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1178 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1179 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1180 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1181 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1182 </table>
|
|
|
1183
|
|
|
1184 </section>
|
|
|
1185
|
|
|
1186 <section>
|
|
|
1187 <h2>No Hits</h2>
|
|
|
1188 <div class=grey>
|
|
|
1189 <table class=headerdata>
|
|
|
1190 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1191 </table>
|
|
|
1192 </div>
|
|
|
1193 </section>
|
|
|
1194 </section>
|
|
|
1195
|
|
|
1196 <section class=match id=match11>
|
|
|
1197
|
|
|
1198 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1199
|
|
|
1200 <section class=header>
|
|
|
1201
|
|
|
1202 <table class=headerdata>
|
|
|
1203 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1204 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1205 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1206 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1207 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1208 </table>
|
|
|
1209
|
|
|
1210 </section>
|
|
|
1211
|
|
|
1212 <section>
|
|
|
1213 <h2>No Hits</h2>
|
|
|
1214 <div class=grey>
|
|
|
1215 <table class=headerdata>
|
|
|
1216 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1217 </table>
|
|
|
1218 </div>
|
|
|
1219 </section>
|
|
|
1220 </section>
|
|
|
1221
|
|
|
1222 <section class=match id=match12>
|
|
|
1223
|
|
|
1224 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1225
|
|
|
1226 <section class=header>
|
|
|
1227
|
|
|
1228 <table class=headerdata>
|
|
|
1229 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1230 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1231 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1232 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1233 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1234 </table>
|
|
|
1235
|
|
|
1236 </section>
|
|
|
1237
|
|
|
1238 <section>
|
|
|
1239 <h2>No Hits</h2>
|
|
|
1240 <div class=grey>
|
|
|
1241 <table class=headerdata>
|
|
|
1242 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1243 </table>
|
|
|
1244 </div>
|
|
|
1245 </section>
|
|
|
1246 </section>
|
|
|
1247
|
|
|
1248 <section class=match id=match13>
|
|
|
1249
|
|
|
1250 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1251
|
|
|
1252 <section class=header>
|
|
|
1253
|
|
|
1254 <table class=headerdata>
|
|
|
1255 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1256 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1257 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1258 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1259 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1260 </table>
|
|
|
1261
|
|
|
1262 </section>
|
|
|
1263
|
|
|
1264 <section>
|
|
|
1265 <h2>No Hits</h2>
|
|
|
1266 <div class=grey>
|
|
|
1267 <table class=headerdata>
|
|
|
1268 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1269 </table>
|
|
|
1270 </div>
|
|
|
1271 </section>
|
|
|
1272 </section>
|
|
|
1273
|
|
|
1274 <section class=match id=match14>
|
|
|
1275
|
|
|
1276 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1277
|
|
|
1278 <section class=header>
|
|
|
1279
|
|
|
1280 <table class=headerdata>
|
|
|
1281 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1282 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1283 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1284 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1285 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1286 </table>
|
|
|
1287
|
|
|
1288 </section>
|
|
|
1289
|
|
|
1290 <section>
|
|
|
1291 <h2>No Hits</h2>
|
|
|
1292 <div class=grey>
|
|
|
1293 <table class=headerdata>
|
|
|
1294 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1295 </table>
|
|
|
1296 </div>
|
|
|
1297 </section>
|
|
|
1298 </section>
|
|
|
1299
|
|
|
1300 <section class=match id=match15>
|
|
|
1301
|
|
|
1302 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1303
|
|
|
1304 <section class=header>
|
|
|
1305
|
|
|
1306 <table class=headerdata>
|
|
|
1307 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1308 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1309 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1310 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1311 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1312 </table>
|
|
|
1313
|
|
|
1314 </section>
|
|
|
1315
|
|
|
1316 <section>
|
|
|
1317 <h2>No Hits</h2>
|
|
|
1318 <div class=grey>
|
|
|
1319 <table class=headerdata>
|
|
|
1320 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1321 </table>
|
|
|
1322 </div>
|
|
|
1323 </section>
|
|
|
1324 </section>
|
|
|
1325
|
|
|
1326 <section class=match id=match16>
|
|
|
1327
|
|
|
1328 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1329
|
|
|
1330 <section class=header>
|
|
|
1331
|
|
|
1332 <table class=headerdata>
|
|
|
1333 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1334 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1335 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1336 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1337 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1338 </table>
|
|
|
1339
|
|
|
1340 </section>
|
|
|
1341
|
|
|
1342 <section>
|
|
|
1343 <h2>No Hits</h2>
|
|
|
1344 <div class=grey>
|
|
|
1345 <table class=headerdata>
|
|
|
1346 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1347 </table>
|
|
|
1348 </div>
|
|
|
1349 </section>
|
|
|
1350 </section>
|
|
|
1351
|
|
|
1352 <section class=match id=match17>
|
|
|
1353
|
|
|
1354 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1355
|
|
|
1356 <section class=header>
|
|
|
1357
|
|
|
1358 <table class=headerdata>
|
|
|
1359 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1360 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1361 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1362 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1363 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1364 </table>
|
|
|
1365
|
|
|
1366 </section>
|
|
|
1367
|
|
|
1368 <section>
|
|
|
1369 <h2>No Hits</h2>
|
|
|
1370 <div class=grey>
|
|
|
1371 <table class=headerdata>
|
|
|
1372 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1373 </table>
|
|
|
1374 </div>
|
|
|
1375 </section>
|
|
|
1376 </section>
|
|
|
1377
|
|
|
1378 <section class=match id=match18>
|
|
|
1379
|
|
|
1380 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1381
|
|
|
1382 <section class=header>
|
|
|
1383
|
|
|
1384 <table class=headerdata>
|
|
|
1385 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1386 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1387 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1388 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1389 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1390 </table>
|
|
|
1391
|
|
|
1392 </section>
|
|
|
1393
|
|
|
1394
|
|
|
1395 <section class=graphics>
|
|
|
1396 <h2>Graphic Summary</h2>
|
|
|
1397
|
|
|
1398 <div class=grey>
|
|
|
1399 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
1400
|
|
|
1401 <div class=defline id=defline18>
|
|
|
1402 Mouse-over to show defline and scores, click to show alignments
|
|
|
1403 </div>
|
|
|
1404
|
|
|
1405 <div class=graphic>
|
|
|
1406 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
1407 <div class=legend><div class=graphicrow>
|
|
|
1408 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
1409 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
1410 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
1411 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
1412 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
1413 </div></div>
|
|
|
1414 <div style="clear: left"></div>
|
|
|
1415
|
|
|
1416 <div class=tablewrapper>
|
|
|
1417
|
|
|
1418 <div class=scale>
|
|
|
1419 <div>query:</div>
|
|
|
1420 <div class=graphicrow>
|
|
|
1421 <div>
|
|
|
1422 <div class=graphicitem style="width: 10%">
|
|
|
1423 <div>2</div>
|
|
|
1424 </div>
|
|
|
1425 <div class=graphicitem style="width: 10%">
|
|
|
1426 <div>4</div>
|
|
|
1427 </div>
|
|
|
1428 <div class=graphicitem style="width: 10%">
|
|
|
1429 <div>6</div>
|
|
|
1430 </div>
|
|
|
1431 <div class=graphicitem style="width: 10%">
|
|
|
1432 <div>8</div>
|
|
|
1433 </div>
|
|
|
1434 <div class=graphicitem style="width: 10%">
|
|
|
1435 <div>10</div>
|
|
|
1436 </div>
|
|
|
1437 <div class=graphicitem style="width: 10%">
|
|
|
1438 <div>12</div>
|
|
|
1439 </div>
|
|
|
1440 <div class=graphicitem style="width: 10%">
|
|
|
1441 <div>14</div>
|
|
|
1442 </div>
|
|
|
1443 <div class=graphicitem style="width: 10%">
|
|
|
1444 <div>16</div>
|
|
|
1445 </div>
|
|
|
1446 <div class=graphicitem style="width: 10%">
|
|
|
1447 <div>18</div>
|
|
|
1448 </div>
|
|
|
1449 <div class=graphicitem style="width: 10%">
|
|
|
1450 <div>20</div>
|
|
|
1451 </div>
|
|
|
1452 </div>
|
|
|
1453 </div>
|
|
|
1454 <div style="clear: left"></div>
|
|
|
1455 </div>
|
|
|
1456
|
|
|
1457 <a class=matchresult
|
|
|
1458 href="#hit18-1"
|
|
|
1459 onmouseover='document.getElementById("defline18").innerHTML="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3\u0027UTR/plant_junction_region.|-9105899556052450000"'
|
|
|
1460 onmouseout='document.getElementById("defline18").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1461 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000">
|
|
|
1462 <div class="matchrow graphicrow">
|
|
|
1463 <div class="matchitem graphicitem"
|
|
|
1464 style="background-color: transparent; width: 15%"></div>
|
|
|
1465 <div class="matchitem graphicitem"
|
|
|
1466 style="background-color: black; width: 85%"></div>
|
|
|
1467 </div>
|
|
|
1468 </a>
|
|
|
1469
|
|
|
1470 </div>
|
|
|
1471 </div>
|
|
|
1472 </div>
|
|
|
1473 </section>
|
|
|
1474
|
|
|
1475
|
|
|
1476
|
|
|
1477 <section class=descriptions>
|
|
|
1478 <h2>Descriptions</h2>
|
|
|
1479
|
|
|
1480 <div class=grey><div class=white>
|
|
|
1481 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
1482
|
|
|
1483 <table class=descriptiontable>
|
|
|
1484 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
1485 <tr>
|
|
|
1486 <th>Description</th>
|
|
|
1487 <th>Max score</th>
|
|
|
1488 <th>Total score</th>
|
|
|
1489 <th>Query cover</th>
|
|
|
1490 <th>E value</th>
|
|
|
1491 <th>Ident</th>
|
|
|
1492 <th>Accession</th>
|
|
|
1493 </tr>
|
|
|
1494 <tr>
|
|
|
1495 <td><div><a href="#hit18-1"
|
|
|
1496 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000"
|
|
|
1497 id="description18-1">
|
|
|
1498 AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000
|
|
|
1499 </a></div></td>
|
|
|
1500 <td>31.9</td>
|
|
|
1501 <td>31.9</td>
|
|
|
1502 <td>85%</td>
|
|
|
1503 <td>2.981e-06</td>
|
|
|
1504 <td>100%</td>
|
|
|
1505 <td><a href="http://example.com/example-genebank?id=Subject_2">Subject_2</a></td>
|
|
|
1506 </tr>
|
|
|
1507 </table>
|
|
|
1508
|
|
|
1509 </div></div>
|
|
|
1510 </section>
|
|
|
1511
|
|
|
1512
|
|
|
1513
|
|
|
1514 <section class=alignments>
|
|
|
1515 <h2>Alignments</h2>
|
|
|
1516
|
|
|
1517 <div class=grey><div class=white>
|
|
|
1518 <div class=alignment id=hit18-1>
|
|
|
1519
|
|
|
1520 <div class=linkheader>
|
|
|
1521 <div class=right><a href="#description18-1">Descriptions</a></div>
|
|
|
1522 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_2">Gene Bank</a>
|
|
|
1523 </div>
|
|
|
1524
|
|
|
1525 <div class=title>
|
|
|
1526 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</p>
|
|
|
1527 <p class=titleinfo>
|
|
|
1528 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_2">Subject_2</a>
|
|
|
1529 <span class=b>Length:</span> 1045
|
|
|
1530 <span class=b>Number of Matches:</span> 1
|
|
|
1531 </p>
|
|
|
1532 </div>
|
|
|
1533
|
|
|
1534
|
|
|
1535 <div class=hotspot id=hotspot18-1-1>
|
|
|
1536 <p class=range>
|
|
|
1537 <span class=range>Range 1: 2 to 18</span>
|
|
|
1538 </p>
|
|
|
1539
|
|
|
1540 <table class=hotspotstable>
|
|
|
1541 <tr>
|
|
|
1542 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1543 </tr>
|
|
|
1544 <tr>
|
|
|
1545 <td>31.9 bits(34)</td>
|
|
|
1546 <td>0.0</td>
|
|
|
1547 <td>17/17(100%)</td>
|
|
|
1548 <td>0/17(0%)</td>
|
|
|
1549 <td>Plus/Plus</td>
|
|
|
1550 </tr>
|
|
|
1551 </table>
|
|
|
1552
|
|
|
1553 <pre class=alignmentgraphic>Query 4 GCGCGGTGTCATCTATG 20
|
|
|
1554 |||||||||||||||||
|
|
|
1555 Subject 2 GCGCGGTGTCATCTATG 18</pre>
|
|
|
1556 </div>
|
|
|
1557
|
|
|
1558 </div>
|
|
|
1559
|
|
|
1560 </div></div>
|
|
|
1561 </section>
|
|
|
1562 </section>
|
|
|
1563
|
|
|
1564 <section class=match id=match19>
|
|
|
1565
|
|
|
1566 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1567
|
|
|
1568 <section class=header>
|
|
|
1569
|
|
|
1570 <table class=headerdata>
|
|
|
1571 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1572 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1573 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1574 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1575 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1576 </table>
|
|
|
1577
|
|
|
1578 </section>
|
|
|
1579
|
|
|
1580
|
|
|
1581 <section class=graphics>
|
|
|
1582 <h2>Graphic Summary</h2>
|
|
|
1583
|
|
|
1584 <div class=grey>
|
|
|
1585 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
1586
|
|
|
1587 <div class=defline id=defline19>
|
|
|
1588 Mouse-over to show defline and scores, click to show alignments
|
|
|
1589 </div>
|
|
|
1590
|
|
|
1591 <div class=graphic>
|
|
|
1592 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
1593 <div class=legend><div class=graphicrow>
|
|
|
1594 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
1595 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
1596 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
1597 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
1598 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
1599 </div></div>
|
|
|
1600 <div style="clear: left"></div>
|
|
|
1601
|
|
|
1602 <div class=tablewrapper>
|
|
|
1603
|
|
|
1604 <div class=scale>
|
|
|
1605 <div>query:</div>
|
|
|
1606 <div class=graphicrow>
|
|
|
1607 <div>
|
|
|
1608 <div class=graphicitem style="width: 10%">
|
|
|
1609 <div>2</div>
|
|
|
1610 </div>
|
|
|
1611 <div class=graphicitem style="width: 10%">
|
|
|
1612 <div>4</div>
|
|
|
1613 </div>
|
|
|
1614 <div class=graphicitem style="width: 10%">
|
|
|
1615 <div>6</div>
|
|
|
1616 </div>
|
|
|
1617 <div class=graphicitem style="width: 10%">
|
|
|
1618 <div>8</div>
|
|
|
1619 </div>
|
|
|
1620 <div class=graphicitem style="width: 10%">
|
|
|
1621 <div>10</div>
|
|
|
1622 </div>
|
|
|
1623 <div class=graphicitem style="width: 10%">
|
|
|
1624 <div>12</div>
|
|
|
1625 </div>
|
|
|
1626 <div class=graphicitem style="width: 10%">
|
|
|
1627 <div>14</div>
|
|
|
1628 </div>
|
|
|
1629 <div class=graphicitem style="width: 10%">
|
|
|
1630 <div>16</div>
|
|
|
1631 </div>
|
|
|
1632 <div class=graphicitem style="width: 10%">
|
|
|
1633 <div>18</div>
|
|
|
1634 </div>
|
|
|
1635 <div class=graphicitem style="width: 10%">
|
|
|
1636 <div>20</div>
|
|
|
1637 </div>
|
|
|
1638 </div>
|
|
|
1639 </div>
|
|
|
1640 <div style="clear: left"></div>
|
|
|
1641 </div>
|
|
|
1642
|
|
|
1643 <a class=matchresult
|
|
|
1644 href="#hit19-1"
|
|
|
1645 onmouseover='document.getElementById("defline19").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
|
|
|
1646 onmouseout='document.getElementById("defline19").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1647 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
|
|
|
1648 <div class="matchrow graphicrow">
|
|
|
1649 <div class="matchitem graphicitem"
|
|
|
1650 style="background-color: black; width: 100%"></div>
|
|
|
1651 </div>
|
|
|
1652 </a>
|
|
|
1653
|
|
|
1654 </div>
|
|
|
1655 </div>
|
|
|
1656 </div>
|
|
|
1657 </section>
|
|
|
1658
|
|
|
1659
|
|
|
1660
|
|
|
1661 <section class=descriptions>
|
|
|
1662 <h2>Descriptions</h2>
|
|
|
1663
|
|
|
1664 <div class=grey><div class=white>
|
|
|
1665 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
1666
|
|
|
1667 <table class=descriptiontable>
|
|
|
1668 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
1669 <tr>
|
|
|
1670 <th>Description</th>
|
|
|
1671 <th>Max score</th>
|
|
|
1672 <th>Total score</th>
|
|
|
1673 <th>Query cover</th>
|
|
|
1674 <th>E value</th>
|
|
|
1675 <th>Ident</th>
|
|
|
1676 <th>Accession</th>
|
|
|
1677 </tr>
|
|
|
1678 <tr>
|
|
|
1679 <td><div><a href="#hit19-1"
|
|
|
1680 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
|
|
|
1681 id="description19-1">
|
|
|
1682 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
|
|
|
1683 </a></div></td>
|
|
|
1684 <td>37.4</td>
|
|
|
1685 <td>37.4</td>
|
|
|
1686 <td>100%</td>
|
|
|
1687 <td>7.011e-08</td>
|
|
|
1688 <td>100%</td>
|
|
|
1689 <td><a href="http://example.com/example-genebank?id=Subject_3">Subject_3</a></td>
|
|
|
1690 </tr>
|
|
|
1691 </table>
|
|
|
1692
|
|
|
1693 </div></div>
|
|
|
1694 </section>
|
|
|
1695
|
|
|
1696
|
|
|
1697
|
|
|
1698 <section class=alignments>
|
|
|
1699 <h2>Alignments</h2>
|
|
|
1700
|
|
|
1701 <div class=grey><div class=white>
|
|
|
1702 <div class=alignment id=hit19-1>
|
|
|
1703
|
|
|
1704 <div class=linkheader>
|
|
|
1705 <div class=right><a href="#description19-1">Descriptions</a></div>
|
|
|
1706 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_3">Gene Bank</a>
|
|
|
1707 </div>
|
|
|
1708
|
|
|
1709 <div class=title>
|
|
|
1710 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
|
|
|
1711 <p class=titleinfo>
|
|
|
1712 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_3">Subject_3</a>
|
|
|
1713 <span class=b>Length:</span> 323
|
|
|
1714 <span class=b>Number of Matches:</span> 1
|
|
|
1715 </p>
|
|
|
1716 </div>
|
|
|
1717
|
|
|
1718
|
|
|
1719 <div class=hotspot id=hotspot19-1-1>
|
|
|
1720 <p class=range>
|
|
|
1721 <span class=range>Range 1: 224 to 243</span>
|
|
|
1722 </p>
|
|
|
1723
|
|
|
1724 <table class=hotspotstable>
|
|
|
1725 <tr>
|
|
|
1726 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1727 </tr>
|
|
|
1728 <tr>
|
|
|
1729 <td>37.4 bits(40)</td>
|
|
|
1730 <td>0.0</td>
|
|
|
1731 <td>20/20(100%)</td>
|
|
|
1732 <td>0/20(0%)</td>
|
|
|
1733 <td>Plus/Plus</td>
|
|
|
1734 </tr>
|
|
|
1735 </table>
|
|
|
1736
|
|
|
1737 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
|
|
|
1738 ||||||||||||||||||||
|
|
|
1739 Subject 224 CGCGCGCGGTGTCATCTATG 243</pre>
|
|
|
1740 </div>
|
|
|
1741
|
|
|
1742 </div>
|
|
|
1743
|
|
|
1744 </div></div>
|
|
|
1745 </section>
|
|
|
1746 </section>
|
|
|
1747
|
|
|
1748 <section class=match id=match20>
|
|
|
1749
|
|
|
1750 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1751
|
|
|
1752 <section class=header>
|
|
|
1753
|
|
|
1754 <table class=headerdata>
|
|
|
1755 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1756 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1757 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1758 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1759 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1760 </table>
|
|
|
1761
|
|
|
1762 </section>
|
|
|
1763
|
|
|
1764 <section>
|
|
|
1765 <h2>No Hits</h2>
|
|
|
1766 <div class=grey>
|
|
|
1767 <table class=headerdata>
|
|
|
1768 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1769 </table>
|
|
|
1770 </div>
|
|
|
1771 </section>
|
|
|
1772 </section>
|
|
|
1773
|
|
|
1774 <section class=match id=match21>
|
|
|
1775
|
|
|
1776 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1777
|
|
|
1778 <section class=header>
|
|
|
1779
|
|
|
1780 <table class=headerdata>
|
|
|
1781 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1782 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1783 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1784 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1785 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1786 </table>
|
|
|
1787
|
|
|
1788 </section>
|
|
|
1789
|
|
|
1790 <section>
|
|
|
1791 <h2>No Hits</h2>
|
|
|
1792 <div class=grey>
|
|
|
1793 <table class=headerdata>
|
|
|
1794 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1795 </table>
|
|
|
1796 </div>
|
|
|
1797 </section>
|
|
|
1798 </section>
|
|
|
1799
|
|
|
1800 <section class=match id=match22>
|
|
|
1801
|
|
|
1802 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1803
|
|
|
1804 <section class=header>
|
|
|
1805
|
|
|
1806 <table class=headerdata>
|
|
|
1807 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1808 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1809 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1810 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1811 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1812 </table>
|
|
|
1813
|
|
|
1814 </section>
|
|
|
1815
|
|
|
1816
|
|
|
1817 <section class=graphics>
|
|
|
1818 <h2>Graphic Summary</h2>
|
|
|
1819
|
|
|
1820 <div class=grey>
|
|
|
1821 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
1822
|
|
|
1823 <div class=defline id=defline22>
|
|
|
1824 Mouse-over to show defline and scores, click to show alignments
|
|
|
1825 </div>
|
|
|
1826
|
|
|
1827 <div class=graphic>
|
|
|
1828 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
1829 <div class=legend><div class=graphicrow>
|
|
|
1830 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
1831 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
1832 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
1833 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
1834 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
1835 </div></div>
|
|
|
1836 <div style="clear: left"></div>
|
|
|
1837
|
|
|
1838 <div class=tablewrapper>
|
|
|
1839
|
|
|
1840 <div class=scale>
|
|
|
1841 <div>query:</div>
|
|
|
1842 <div class=graphicrow>
|
|
|
1843 <div>
|
|
|
1844 <div class=graphicitem style="width: 10%">
|
|
|
1845 <div>2</div>
|
|
|
1846 </div>
|
|
|
1847 <div class=graphicitem style="width: 10%">
|
|
|
1848 <div>4</div>
|
|
|
1849 </div>
|
|
|
1850 <div class=graphicitem style="width: 10%">
|
|
|
1851 <div>6</div>
|
|
|
1852 </div>
|
|
|
1853 <div class=graphicitem style="width: 10%">
|
|
|
1854 <div>8</div>
|
|
|
1855 </div>
|
|
|
1856 <div class=graphicitem style="width: 10%">
|
|
|
1857 <div>10</div>
|
|
|
1858 </div>
|
|
|
1859 <div class=graphicitem style="width: 10%">
|
|
|
1860 <div>12</div>
|
|
|
1861 </div>
|
|
|
1862 <div class=graphicitem style="width: 10%">
|
|
|
1863 <div>14</div>
|
|
|
1864 </div>
|
|
|
1865 <div class=graphicitem style="width: 10%">
|
|
|
1866 <div>16</div>
|
|
|
1867 </div>
|
|
|
1868 <div class=graphicitem style="width: 10%">
|
|
|
1869 <div>18</div>
|
|
|
1870 </div>
|
|
|
1871 <div class=graphicitem style="width: 10%">
|
|
|
1872 <div>20</div>
|
|
|
1873 </div>
|
|
|
1874 </div>
|
|
|
1875 </div>
|
|
|
1876 <div style="clear: left"></div>
|
|
|
1877 </div>
|
|
|
1878
|
|
|
1879 <a class=matchresult
|
|
|
1880 href="#hit22-1"
|
|
|
1881 onmouseover='document.getElementById("defline22").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
|
|
|
1882 onmouseout='document.getElementById("defline22").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1883 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
|
|
|
1884 <div class="matchrow graphicrow">
|
|
|
1885 <div class="matchitem graphicitem"
|
|
|
1886 style="background-color: black; width: 100%"></div>
|
|
|
1887 </div>
|
|
|
1888 </a>
|
|
|
1889
|
|
|
1890 </div>
|
|
|
1891 </div>
|
|
|
1892 </div>
|
|
|
1893 </section>
|
|
|
1894
|
|
|
1895
|
|
|
1896
|
|
|
1897 <section class=descriptions>
|
|
|
1898 <h2>Descriptions</h2>
|
|
|
1899
|
|
|
1900 <div class=grey><div class=white>
|
|
|
1901 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
1902
|
|
|
1903 <table class=descriptiontable>
|
|
|
1904 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
1905 <tr>
|
|
|
1906 <th>Description</th>
|
|
|
1907 <th>Max score</th>
|
|
|
1908 <th>Total score</th>
|
|
|
1909 <th>Query cover</th>
|
|
|
1910 <th>E value</th>
|
|
|
1911 <th>Ident</th>
|
|
|
1912 <th>Accession</th>
|
|
|
1913 </tr>
|
|
|
1914 <tr>
|
|
|
1915 <td><div><a href="#hit22-1"
|
|
|
1916 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
|
|
|
1917 id="description22-1">
|
|
|
1918 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
|
|
|
1919 </a></div></td>
|
|
|
1920 <td>37.4</td>
|
|
|
1921 <td>37.4</td>
|
|
|
1922 <td>100%</td>
|
|
|
1923 <td>7.011e-08</td>
|
|
|
1924 <td>100%</td>
|
|
|
1925 <td><a href="http://example.com/example-genebank?id=Subject_6">Subject_6</a></td>
|
|
|
1926 </tr>
|
|
|
1927 </table>
|
|
|
1928
|
|
|
1929 </div></div>
|
|
|
1930 </section>
|
|
|
1931
|
|
|
1932
|
|
|
1933
|
|
|
1934 <section class=alignments>
|
|
|
1935 <h2>Alignments</h2>
|
|
|
1936
|
|
|
1937 <div class=grey><div class=white>
|
|
|
1938 <div class=alignment id=hit22-1>
|
|
|
1939
|
|
|
1940 <div class=linkheader>
|
|
|
1941 <div class=right><a href="#description22-1">Descriptions</a></div>
|
|
|
1942 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_6">Gene Bank</a>
|
|
|
1943 </div>
|
|
|
1944
|
|
|
1945 <div class=title>
|
|
|
1946 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
|
|
|
1947 <p class=titleinfo>
|
|
|
1948 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_6">Subject_6</a>
|
|
|
1949 <span class=b>Length:</span> 2457
|
|
|
1950 <span class=b>Number of Matches:</span> 1
|
|
|
1951 </p>
|
|
|
1952 </div>
|
|
|
1953
|
|
|
1954
|
|
|
1955 <div class=hotspot id=hotspot22-1-1>
|
|
|
1956 <p class=range>
|
|
|
1957 <span class=range>Range 1: 2143 to 2162</span>
|
|
|
1958 </p>
|
|
|
1959
|
|
|
1960 <table class=hotspotstable>
|
|
|
1961 <tr>
|
|
|
1962 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1963 </tr>
|
|
|
1964 <tr>
|
|
|
1965 <td>37.4 bits(40)</td>
|
|
|
1966 <td>0.0</td>
|
|
|
1967 <td>20/20(100%)</td>
|
|
|
1968 <td>0/20(0%)</td>
|
|
|
1969 <td>Plus/Plus</td>
|
|
|
1970 </tr>
|
|
|
1971 </table>
|
|
|
1972
|
|
|
1973 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
|
|
|
1974 ||||||||||||||||||||
|
|
|
1975 Subject 2143 CGCGCGCGGTGTCATCTATG 2162</pre>
|
|
|
1976 </div>
|
|
|
1977
|
|
|
1978 </div>
|
|
|
1979
|
|
|
1980 </div></div>
|
|
|
1981 </section>
|
|
|
1982 </section>
|
|
|
1983
|
|
|
1984 <section class=match id=match23>
|
|
|
1985
|
|
|
1986 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1987
|
|
|
1988 <section class=header>
|
|
|
1989
|
|
|
1990 <table class=headerdata>
|
|
|
1991 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1992 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1993 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1994 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1995 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1996 </table>
|
|
|
1997
|
|
|
1998 </section>
|
|
|
1999
|
|
|
2000 <section>
|
|
|
2001 <h2>No Hits</h2>
|
|
|
2002 <div class=grey>
|
|
|
2003 <table class=headerdata>
|
|
|
2004 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2005 </table>
|
|
|
2006 </div>
|
|
|
2007 </section>
|
|
|
2008 </section>
|
|
|
2009
|
|
|
2010 <section class=match id=match24>
|
|
|
2011
|
|
|
2012 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2013
|
|
|
2014 <section class=header>
|
|
|
2015
|
|
|
2016 <table class=headerdata>
|
|
|
2017 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2018 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2019 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2020 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2021 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2022 </table>
|
|
|
2023
|
|
|
2024 </section>
|
|
|
2025
|
|
|
2026 <section>
|
|
|
2027 <h2>No Hits</h2>
|
|
|
2028 <div class=grey>
|
|
|
2029 <table class=headerdata>
|
|
|
2030 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2031 </table>
|
|
|
2032 </div>
|
|
|
2033 </section>
|
|
|
2034 </section>
|
|
|
2035
|
|
|
2036 <section class=match id=match25>
|
|
|
2037
|
|
|
2038 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2039
|
|
|
2040 <section class=header>
|
|
|
2041
|
|
|
2042 <table class=headerdata>
|
|
|
2043 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2044 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2045 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2046 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2047 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2048 </table>
|
|
|
2049
|
|
|
2050 </section>
|
|
|
2051
|
|
|
2052 <section>
|
|
|
2053 <h2>No Hits</h2>
|
|
|
2054 <div class=grey>
|
|
|
2055 <table class=headerdata>
|
|
|
2056 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2057 </table>
|
|
|
2058 </div>
|
|
|
2059 </section>
|
|
|
2060 </section>
|
|
|
2061
|
|
|
2062 <section class=match id=match26>
|
|
|
2063
|
|
|
2064 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2065
|
|
|
2066 <section class=header>
|
|
|
2067
|
|
|
2068 <table class=headerdata>
|
|
|
2069 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2070 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2071 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2072 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2073 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2074 </table>
|
|
|
2075
|
|
|
2076 </section>
|
|
|
2077
|
|
|
2078 <section>
|
|
|
2079 <h2>No Hits</h2>
|
|
|
2080 <div class=grey>
|
|
|
2081 <table class=headerdata>
|
|
|
2082 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2083 </table>
|
|
|
2084 </div>
|
|
|
2085 </section>
|
|
|
2086 </section>
|
|
|
2087
|
|
|
2088 <section class=match id=match27>
|
|
|
2089
|
|
|
2090 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2091
|
|
|
2092 <section class=header>
|
|
|
2093
|
|
|
2094 <table class=headerdata>
|
|
|
2095 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2096 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2097 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2098 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2099 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2100 </table>
|
|
|
2101
|
|
|
2102 </section>
|
|
|
2103
|
|
|
2104 <section>
|
|
|
2105 <h2>No Hits</h2>
|
|
|
2106 <div class=grey>
|
|
|
2107 <table class=headerdata>
|
|
|
2108 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2109 </table>
|
|
|
2110 </div>
|
|
|
2111 </section>
|
|
|
2112 </section>
|
|
|
2113
|
|
|
2114 <section class=match id=match28>
|
|
|
2115
|
|
|
2116 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2117
|
|
|
2118 <section class=header>
|
|
|
2119
|
|
|
2120 <table class=headerdata>
|
|
|
2121 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2122 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2123 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2124 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2125 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2126 </table>
|
|
|
2127
|
|
|
2128 </section>
|
|
|
2129
|
|
|
2130 <section>
|
|
|
2131 <h2>No Hits</h2>
|
|
|
2132 <div class=grey>
|
|
|
2133 <table class=headerdata>
|
|
|
2134 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2135 </table>
|
|
|
2136 </div>
|
|
|
2137 </section>
|
|
|
2138 </section>
|
|
|
2139
|
|
|
2140 <section class=match id=match29>
|
|
|
2141
|
|
|
2142 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2143
|
|
|
2144 <section class=header>
|
|
|
2145
|
|
|
2146 <table class=headerdata>
|
|
|
2147 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2148 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2149 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2150 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2151 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2152 </table>
|
|
|
2153
|
|
|
2154 </section>
|
|
|
2155
|
|
|
2156 <section>
|
|
|
2157 <h2>No Hits</h2>
|
|
|
2158 <div class=grey>
|
|
|
2159 <table class=headerdata>
|
|
|
2160 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2161 </table>
|
|
|
2162 </div>
|
|
|
2163 </section>
|
|
|
2164 </section>
|
|
|
2165
|
|
|
2166 <section class=match id=match30>
|
|
|
2167
|
|
|
2168 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2169
|
|
|
2170 <section class=header>
|
|
|
2171
|
|
|
2172 <table class=headerdata>
|
|
|
2173 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2174 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2175 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2176 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2177 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2178 </table>
|
|
|
2179
|
|
|
2180 </section>
|
|
|
2181
|
|
|
2182 <section>
|
|
|
2183 <h2>No Hits</h2>
|
|
|
2184 <div class=grey>
|
|
|
2185 <table class=headerdata>
|
|
|
2186 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2187 </table>
|
|
|
2188 </div>
|
|
|
2189 </section>
|
|
|
2190 </section>
|
|
|
2191
|
|
|
2192 <section class=match id=match31>
|
|
|
2193
|
|
|
2194 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2195
|
|
|
2196 <section class=header>
|
|
|
2197
|
|
|
2198 <table class=headerdata>
|
|
|
2199 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2200 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2201 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2202 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2203 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2204 </table>
|
|
|
2205
|
|
|
2206 </section>
|
|
|
2207
|
|
|
2208 <section>
|
|
|
2209 <h2>No Hits</h2>
|
|
|
2210 <div class=grey>
|
|
|
2211 <table class=headerdata>
|
|
|
2212 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2213 </table>
|
|
|
2214 </div>
|
|
|
2215 </section>
|
|
|
2216 </section>
|
|
|
2217
|
|
|
2218 <section class=match id=match32>
|
|
|
2219
|
|
|
2220 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2221
|
|
|
2222 <section class=header>
|
|
|
2223
|
|
|
2224 <table class=headerdata>
|
|
|
2225 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2226 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2227 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2228 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2229 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2230 </table>
|
|
|
2231
|
|
|
2232 </section>
|
|
|
2233
|
|
|
2234 <section>
|
|
|
2235 <h2>No Hits</h2>
|
|
|
2236 <div class=grey>
|
|
|
2237 <table class=headerdata>
|
|
|
2238 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2239 </table>
|
|
|
2240 </div>
|
|
|
2241 </section>
|
|
|
2242 </section>
|
|
|
2243
|
|
|
2244 <section class=match id=match33>
|
|
|
2245
|
|
|
2246 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2247
|
|
|
2248 <section class=header>
|
|
|
2249
|
|
|
2250 <table class=headerdata>
|
|
|
2251 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2252 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2253 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2254 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2255 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2256 </table>
|
|
|
2257
|
|
|
2258 </section>
|
|
|
2259
|
|
|
2260 <section>
|
|
|
2261 <h2>No Hits</h2>
|
|
|
2262 <div class=grey>
|
|
|
2263 <table class=headerdata>
|
|
|
2264 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2265 </table>
|
|
|
2266 </div>
|
|
|
2267 </section>
|
|
|
2268 </section>
|
|
|
2269
|
|
|
2270 <section class=match id=match34>
|
|
|
2271
|
|
|
2272 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2273
|
|
|
2274 <section class=header>
|
|
|
2275
|
|
|
2276 <table class=headerdata>
|
|
|
2277 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2278 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2279 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2280 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2281 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2282 </table>
|
|
|
2283
|
|
|
2284 </section>
|
|
|
2285
|
|
|
2286 <section>
|
|
|
2287 <h2>No Hits</h2>
|
|
|
2288 <div class=grey>
|
|
|
2289 <table class=headerdata>
|
|
|
2290 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2291 </table>
|
|
|
2292 </div>
|
|
|
2293 </section>
|
|
|
2294 </section>
|
|
|
2295
|
|
|
2296 <section class=match id=match35>
|
|
|
2297
|
|
|
2298 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2299
|
|
|
2300 <section class=header>
|
|
|
2301
|
|
|
2302 <table class=headerdata>
|
|
|
2303 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2304 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2305 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2306 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2307 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2308 </table>
|
|
|
2309
|
|
|
2310 </section>
|
|
|
2311
|
|
|
2312 <section>
|
|
|
2313 <h2>No Hits</h2>
|
|
|
2314 <div class=grey>
|
|
|
2315 <table class=headerdata>
|
|
|
2316 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2317 </table>
|
|
|
2318 </div>
|
|
|
2319 </section>
|
|
|
2320 </section>
|
|
|
2321
|
|
|
2322 <section class=match id=match36>
|
|
|
2323
|
|
|
2324 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2325
|
|
|
2326 <section class=header>
|
|
|
2327
|
|
|
2328 <table class=headerdata>
|
|
|
2329 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2330 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2331 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2332 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2333 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2334 </table>
|
|
|
2335
|
|
|
2336 </section>
|
|
|
2337
|
|
|
2338 <section>
|
|
|
2339 <h2>No Hits</h2>
|
|
|
2340 <div class=grey>
|
|
|
2341 <table class=headerdata>
|
|
|
2342 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2343 </table>
|
|
|
2344 </div>
|
|
|
2345 </section>
|
|
|
2346 </section>
|
|
|
2347
|
|
|
2348 <section class=match id=match37>
|
|
|
2349
|
|
|
2350 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2351
|
|
|
2352 <section class=header>
|
|
|
2353
|
|
|
2354 <table class=headerdata>
|
|
|
2355 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2356 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2357 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2358 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2359 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2360 </table>
|
|
|
2361
|
|
|
2362 </section>
|
|
|
2363
|
|
|
2364 <section>
|
|
|
2365 <h2>No Hits</h2>
|
|
|
2366 <div class=grey>
|
|
|
2367 <table class=headerdata>
|
|
|
2368 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2369 </table>
|
|
|
2370 </div>
|
|
|
2371 </section>
|
|
|
2372 </section>
|
|
|
2373
|
|
|
2374 <section class=match id=match38>
|
|
|
2375
|
|
|
2376 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2377
|
|
|
2378 <section class=header>
|
|
|
2379
|
|
|
2380 <table class=headerdata>
|
|
|
2381 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2382 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2383 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2384 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2385 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2386 </table>
|
|
|
2387
|
|
|
2388 </section>
|
|
|
2389
|
|
|
2390 <section>
|
|
|
2391 <h2>No Hits</h2>
|
|
|
2392 <div class=grey>
|
|
|
2393 <table class=headerdata>
|
|
|
2394 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2395 </table>
|
|
|
2396 </div>
|
|
|
2397 </section>
|
|
|
2398 </section>
|
|
|
2399
|
|
|
2400 <section class=match id=match39>
|
|
|
2401
|
|
|
2402 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2403
|
|
|
2404 <section class=header>
|
|
|
2405
|
|
|
2406 <table class=headerdata>
|
|
|
2407 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2408 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2409 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2410 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2411 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2412 </table>
|
|
|
2413
|
|
|
2414 </section>
|
|
|
2415
|
|
|
2416 <section>
|
|
|
2417 <h2>No Hits</h2>
|
|
|
2418 <div class=grey>
|
|
|
2419 <table class=headerdata>
|
|
|
2420 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2421 </table>
|
|
|
2422 </div>
|
|
|
2423 </section>
|
|
|
2424 </section>
|
|
|
2425
|
|
|
2426 <section class=match id=match40>
|
|
|
2427
|
|
|
2428 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2429
|
|
|
2430 <section class=header>
|
|
|
2431
|
|
|
2432 <table class=headerdata>
|
|
|
2433 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2434 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2435 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2436 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2437 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2438 </table>
|
|
|
2439
|
|
|
2440 </section>
|
|
|
2441
|
|
|
2442 <section>
|
|
|
2443 <h2>No Hits</h2>
|
|
|
2444 <div class=grey>
|
|
|
2445 <table class=headerdata>
|
|
|
2446 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2447 </table>
|
|
|
2448 </div>
|
|
|
2449 </section>
|
|
|
2450 </section>
|
|
|
2451
|
|
|
2452 <section class=match id=match41>
|
|
|
2453
|
|
|
2454 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2455
|
|
|
2456 <section class=header>
|
|
|
2457
|
|
|
2458 <table class=headerdata>
|
|
|
2459 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2460 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2461 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2462 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2463 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2464 </table>
|
|
|
2465
|
|
|
2466 </section>
|
|
|
2467
|
|
|
2468 <section>
|
|
|
2469 <h2>No Hits</h2>
|
|
|
2470 <div class=grey>
|
|
|
2471 <table class=headerdata>
|
|
|
2472 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2473 </table>
|
|
|
2474 </div>
|
|
|
2475 </section>
|
|
|
2476 </section>
|
|
|
2477
|
|
|
2478 <section class=match id=match42>
|
|
|
2479
|
|
|
2480 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2481
|
|
|
2482 <section class=header>
|
|
|
2483
|
|
|
2484 <table class=headerdata>
|
|
|
2485 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2486 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2487 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2488 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2489 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2490 </table>
|
|
|
2491
|
|
|
2492 </section>
|
|
|
2493
|
|
|
2494 <section>
|
|
|
2495 <h2>No Hits</h2>
|
|
|
2496 <div class=grey>
|
|
|
2497 <table class=headerdata>
|
|
|
2498 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2499 </table>
|
|
|
2500 </div>
|
|
|
2501 </section>
|
|
|
2502 </section>
|
|
|
2503
|
|
|
2504 <section class=match id=match43>
|
|
|
2505
|
|
|
2506 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2507
|
|
|
2508 <section class=header>
|
|
|
2509
|
|
|
2510 <table class=headerdata>
|
|
|
2511 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2512 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2513 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2514 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2515 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2516 </table>
|
|
|
2517
|
|
|
2518 </section>
|
|
|
2519
|
|
|
2520 <section>
|
|
|
2521 <h2>No Hits</h2>
|
|
|
2522 <div class=grey>
|
|
|
2523 <table class=headerdata>
|
|
|
2524 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2525 </table>
|
|
|
2526 </div>
|
|
|
2527 </section>
|
|
|
2528 </section>
|
|
|
2529
|
|
|
2530 <section class=match id=match44>
|
|
|
2531
|
|
|
2532 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2533
|
|
|
2534 <section class=header>
|
|
|
2535
|
|
|
2536 <table class=headerdata>
|
|
|
2537 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2538 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2539 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2540 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2541 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2542 </table>
|
|
|
2543
|
|
|
2544 </section>
|
|
|
2545
|
|
|
2546 <section>
|
|
|
2547 <h2>No Hits</h2>
|
|
|
2548 <div class=grey>
|
|
|
2549 <table class=headerdata>
|
|
|
2550 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2551 </table>
|
|
|
2552 </div>
|
|
|
2553 </section>
|
|
|
2554 </section>
|
|
|
2555
|
|
|
2556 <section class=match id=match45>
|
|
|
2557
|
|
|
2558 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2559
|
|
|
2560 <section class=header>
|
|
|
2561
|
|
|
2562 <table class=headerdata>
|
|
|
2563 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2564 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2565 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2566 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2567 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2568 </table>
|
|
|
2569
|
|
|
2570 </section>
|
|
|
2571
|
|
|
2572 <section>
|
|
|
2573 <h2>No Hits</h2>
|
|
|
2574 <div class=grey>
|
|
|
2575 <table class=headerdata>
|
|
|
2576 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2577 </table>
|
|
|
2578 </div>
|
|
|
2579 </section>
|
|
|
2580 </section>
|
|
|
2581
|
|
|
2582 <section class=match id=match46>
|
|
|
2583
|
|
|
2584 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2585
|
|
|
2586 <section class=header>
|
|
|
2587
|
|
|
2588 <table class=headerdata>
|
|
|
2589 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2590 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2591 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2592 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2593 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2594 </table>
|
|
|
2595
|
|
|
2596 </section>
|
|
|
2597
|
|
|
2598 <section>
|
|
|
2599 <h2>No Hits</h2>
|
|
|
2600 <div class=grey>
|
|
|
2601 <table class=headerdata>
|
|
|
2602 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2603 </table>
|
|
|
2604 </div>
|
|
|
2605 </section>
|
|
|
2606 </section>
|
|
|
2607
|
|
|
2608 <section class=match id=match47>
|
|
|
2609
|
|
|
2610 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2611
|
|
|
2612 <section class=header>
|
|
|
2613
|
|
|
2614 <table class=headerdata>
|
|
|
2615 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2616 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2617 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2618 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2619 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2620 </table>
|
|
|
2621
|
|
|
2622 </section>
|
|
|
2623
|
|
|
2624
|
|
|
2625 <section class=graphics>
|
|
|
2626 <h2>Graphic Summary</h2>
|
|
|
2627
|
|
|
2628 <div class=grey>
|
|
|
2629 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
2630
|
|
|
2631 <div class=defline id=defline47>
|
|
|
2632 Mouse-over to show defline and scores, click to show alignments
|
|
|
2633 </div>
|
|
|
2634
|
|
|
2635 <div class=graphic>
|
|
|
2636 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
2637 <div class=legend><div class=graphicrow>
|
|
|
2638 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
2639 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
2640 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
2641 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
2642 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
2643 </div></div>
|
|
|
2644 <div style="clear: left"></div>
|
|
|
2645
|
|
|
2646 <div class=tablewrapper>
|
|
|
2647
|
|
|
2648 <div class=scale>
|
|
|
2649 <div>query:</div>
|
|
|
2650 <div class=graphicrow>
|
|
|
2651 <div>
|
|
|
2652 <div class=graphicitem style="width: 12%">
|
|
|
2653 <div>3</div>
|
|
|
2654 </div>
|
|
|
2655 <div class=graphicitem style="width: 12%">
|
|
|
2656 <div>6</div>
|
|
|
2657 </div>
|
|
|
2658 <div class=graphicitem style="width: 12%">
|
|
|
2659 <div>9</div>
|
|
|
2660 </div>
|
|
|
2661 <div class=graphicitem style="width: 12%">
|
|
|
2662 <div>12</div>
|
|
|
2663 </div>
|
|
|
2664 <div class=graphicitem style="width: 12%">
|
|
|
2665 <div>15</div>
|
|
|
2666 </div>
|
|
|
2667 <div class=graphicitem style="width: 12%">
|
|
|
2668 <div>18</div>
|
|
|
2669 </div>
|
|
|
2670 <div class=graphicitem style="width: 12%">
|
|
|
2671 <div>21</div>
|
|
|
2672 </div>
|
|
|
2673 <div class=graphicitem style="width: 12%">
|
|
|
2674 <div>24</div>
|
|
|
2675 </div>
|
|
|
2676 <div class=graphicitem style="width: 4%">
|
|
|
2677 <div>25</div>
|
|
|
2678 </div>
|
|
|
2679 </div>
|
|
|
2680 </div>
|
|
|
2681 <div style="clear: left"></div>
|
|
|
2682 </div>
|
|
|
2683
|
|
|
2684 <a class=matchresult
|
|
|
2685 href="#hit47-1"
|
|
|
2686 onmouseover='document.getElementById("defline47").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
|
|
|
2687 onmouseout='document.getElementById("defline47").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
2688 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
|
|
|
2689 <div class="matchrow graphicrow">
|
|
|
2690 <div class="matchitem graphicitem"
|
|
|
2691 style="background-color: black; width: 100%"></div>
|
|
|
2692 </div>
|
|
|
2693 </a>
|
|
|
2694
|
|
|
2695 </div>
|
|
|
2696 </div>
|
|
|
2697 </div>
|
|
|
2698 </section>
|
|
|
2699
|
|
|
2700
|
|
|
2701
|
|
|
2702 <section class=descriptions>
|
|
|
2703 <h2>Descriptions</h2>
|
|
|
2704
|
|
|
2705 <div class=grey><div class=white>
|
|
|
2706 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
2707
|
|
|
2708 <table class=descriptiontable>
|
|
|
2709 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
2710 <tr>
|
|
|
2711 <th>Description</th>
|
|
|
2712 <th>Max score</th>
|
|
|
2713 <th>Total score</th>
|
|
|
2714 <th>Query cover</th>
|
|
|
2715 <th>E value</th>
|
|
|
2716 <th>Ident</th>
|
|
|
2717 <th>Accession</th>
|
|
|
2718 </tr>
|
|
|
2719 <tr>
|
|
|
2720 <td><div><a href="#hit47-1"
|
|
|
2721 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
|
|
|
2722 id="description47-1">
|
|
|
2723 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
|
|
|
2724 </a></div></td>
|
|
|
2725 <td>37.4</td>
|
|
|
2726 <td>37.4</td>
|
|
|
2727 <td>100%</td>
|
|
|
2728 <td>9.338e-08</td>
|
|
|
2729 <td>92%</td>
|
|
|
2730 <td><a href="http://example.com/example-genebank?id=Subject_7">Subject_7</a></td>
|
|
|
2731 </tr>
|
|
|
2732 </table>
|
|
|
2733
|
|
|
2734 </div></div>
|
|
|
2735 </section>
|
|
|
2736
|
|
|
2737
|
|
|
2738
|
|
|
2739 <section class=alignments>
|
|
|
2740 <h2>Alignments</h2>
|
|
|
2741
|
|
|
2742 <div class=grey><div class=white>
|
|
|
2743 <div class=alignment id=hit47-1>
|
|
|
2744
|
|
|
2745 <div class=linkheader>
|
|
|
2746 <div class=right><a href="#description47-1">Descriptions</a></div>
|
|
|
2747 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_7">Gene Bank</a>
|
|
|
2748 </div>
|
|
|
2749
|
|
|
2750 <div class=title>
|
|
|
2751 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
|
|
|
2752 <p class=titleinfo>
|
|
|
2753 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_7">Subject_7</a>
|
|
|
2754 <span class=b>Length:</span> 4180
|
|
|
2755 <span class=b>Number of Matches:</span> 1
|
|
|
2756 </p>
|
|
|
2757 </div>
|
|
|
2758
|
|
|
2759
|
|
|
2760 <div class=hotspot id=hotspot47-1-1>
|
|
|
2761 <p class=range>
|
|
|
2762 <span class=range>Range 1: 1541 to 1565</span>
|
|
|
2763 </p>
|
|
|
2764
|
|
|
2765 <table class=hotspotstable>
|
|
|
2766 <tr>
|
|
|
2767 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
2768 </tr>
|
|
|
2769 <tr>
|
|
|
2770 <td>37.4 bits(40)</td>
|
|
|
2771 <td>0.0</td>
|
|
|
2772 <td>23/25(92%)</td>
|
|
|
2773 <td>0/25(0%)</td>
|
|
|
2774 <td>Plus/Plus</td>
|
|
|
2775 </tr>
|
|
|
2776 </table>
|
|
|
2777
|
|
|
2778 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCACAGC 25
|
|
|
2779 |||||||||||||| ||||||| ||
|
|
|
2780 Subject 1541 ACATGAACAGCGCCCTGACCACCGC 1565</pre>
|
|
|
2781 </div>
|
|
|
2782
|
|
|
2783 </div>
|
|
|
2784
|
|
|
2785 </div></div>
|
|
|
2786 </section>
|
|
|
2787 </section>
|
|
|
2788
|
|
|
2789 <section class=match id=match48>
|
|
|
2790
|
|
|
2791 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2792
|
|
|
2793 <section class=header>
|
|
|
2794
|
|
|
2795 <table class=headerdata>
|
|
|
2796 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2797 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2798 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2799 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2800 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2801 </table>
|
|
|
2802
|
|
|
2803 </section>
|
|
|
2804
|
|
|
2805
|
|
|
2806 <section class=graphics>
|
|
|
2807 <h2>Graphic Summary</h2>
|
|
|
2808
|
|
|
2809 <div class=grey>
|
|
|
2810 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
2811
|
|
|
2812 <div class=defline id=defline48>
|
|
|
2813 Mouse-over to show defline and scores, click to show alignments
|
|
|
2814 </div>
|
|
|
2815
|
|
|
2816 <div class=graphic>
|
|
|
2817 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
2818 <div class=legend><div class=graphicrow>
|
|
|
2819 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
2820 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
2821 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
2822 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
2823 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
2824 </div></div>
|
|
|
2825 <div style="clear: left"></div>
|
|
|
2826
|
|
|
2827 <div class=tablewrapper>
|
|
|
2828
|
|
|
2829 <div class=scale>
|
|
|
2830 <div>query:</div>
|
|
|
2831 <div class=graphicrow>
|
|
|
2832 <div>
|
|
|
2833 <div class=graphicitem style="width: 12%">
|
|
|
2834 <div>3</div>
|
|
|
2835 </div>
|
|
|
2836 <div class=graphicitem style="width: 12%">
|
|
|
2837 <div>6</div>
|
|
|
2838 </div>
|
|
|
2839 <div class=graphicitem style="width: 12%">
|
|
|
2840 <div>9</div>
|
|
|
2841 </div>
|
|
|
2842 <div class=graphicitem style="width: 12%">
|
|
|
2843 <div>12</div>
|
|
|
2844 </div>
|
|
|
2845 <div class=graphicitem style="width: 12%">
|
|
|
2846 <div>15</div>
|
|
|
2847 </div>
|
|
|
2848 <div class=graphicitem style="width: 12%">
|
|
|
2849 <div>18</div>
|
|
|
2850 </div>
|
|
|
2851 <div class=graphicitem style="width: 12%">
|
|
|
2852 <div>21</div>
|
|
|
2853 </div>
|
|
|
2854 <div class=graphicitem style="width: 12%">
|
|
|
2855 <div>24</div>
|
|
|
2856 </div>
|
|
|
2857 <div class=graphicitem style="width: 4%">
|
|
|
2858 <div>25</div>
|
|
|
2859 </div>
|
|
|
2860 </div>
|
|
|
2861 </div>
|
|
|
2862 <div style="clear: left"></div>
|
|
|
2863 </div>
|
|
|
2864
|
|
|
2865 <a class=matchresult
|
|
|
2866 href="#hit48-1"
|
|
|
2867 onmouseover='document.getElementById("defline48").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
|
|
|
2868 onmouseout='document.getElementById("defline48").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
2869 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
|
|
|
2870 <div class="matchrow graphicrow">
|
|
|
2871 <div class="matchitem graphicitem"
|
|
|
2872 style="background-color: black; width: 100%"></div>
|
|
|
2873 </div>
|
|
|
2874 </a>
|
|
|
2875
|
|
|
2876 </div>
|
|
|
2877 </div>
|
|
|
2878 </div>
|
|
|
2879 </section>
|
|
|
2880
|
|
|
2881
|
|
|
2882
|
|
|
2883 <section class=descriptions>
|
|
|
2884 <h2>Descriptions</h2>
|
|
|
2885
|
|
|
2886 <div class=grey><div class=white>
|
|
|
2887 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
2888
|
|
|
2889 <table class=descriptiontable>
|
|
|
2890 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
2891 <tr>
|
|
|
2892 <th>Description</th>
|
|
|
2893 <th>Max score</th>
|
|
|
2894 <th>Total score</th>
|
|
|
2895 <th>Query cover</th>
|
|
|
2896 <th>E value</th>
|
|
|
2897 <th>Ident</th>
|
|
|
2898 <th>Accession</th>
|
|
|
2899 </tr>
|
|
|
2900 <tr>
|
|
|
2901 <td><div><a href="#hit48-1"
|
|
|
2902 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
|
|
|
2903 id="description48-1">
|
|
|
2904 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
|
|
|
2905 </a></div></td>
|
|
|
2906 <td>37.4</td>
|
|
|
2907 <td>37.4</td>
|
|
|
2908 <td>100%</td>
|
|
|
2909 <td>9.338e-08</td>
|
|
|
2910 <td>92%</td>
|
|
|
2911 <td><a href="http://example.com/example-genebank?id=Subject_8">Subject_8</a></td>
|
|
|
2912 </tr>
|
|
|
2913 </table>
|
|
|
2914
|
|
|
2915 </div></div>
|
|
|
2916 </section>
|
|
|
2917
|
|
|
2918
|
|
|
2919
|
|
|
2920 <section class=alignments>
|
|
|
2921 <h2>Alignments</h2>
|
|
|
2922
|
|
|
2923 <div class=grey><div class=white>
|
|
|
2924 <div class=alignment id=hit48-1>
|
|
|
2925
|
|
|
2926 <div class=linkheader>
|
|
|
2927 <div class=right><a href="#description48-1">Descriptions</a></div>
|
|
|
2928 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_8">Gene Bank</a>
|
|
|
2929 </div>
|
|
|
2930
|
|
|
2931 <div class=title>
|
|
|
2932 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
|
|
|
2933 <p class=titleinfo>
|
|
|
2934 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_8">Subject_8</a>
|
|
|
2935 <span class=b>Length:</span> 4983
|
|
|
2936 <span class=b>Number of Matches:</span> 1
|
|
|
2937 </p>
|
|
|
2938 </div>
|
|
|
2939
|
|
|
2940
|
|
|
2941 <div class=hotspot id=hotspot48-1-1>
|
|
|
2942 <p class=range>
|
|
|
2943 <span class=range>Range 1: 2344 to 2368</span>
|
|
|
2944 </p>
|
|
|
2945
|
|
|
2946 <table class=hotspotstable>
|
|
|
2947 <tr>
|
|
|
2948 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
2949 </tr>
|
|
|
2950 <tr>
|
|
|
2951 <td>37.4 bits(40)</td>
|
|
|
2952 <td>0.0</td>
|
|
|
2953 <td>23/25(92%)</td>
|
|
|
2954 <td>0/25(0%)</td>
|
|
|
2955 <td>Plus/Plus</td>
|
|
|
2956 </tr>
|
|
|
2957 </table>
|
|
|
2958
|
|
|
2959 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCACAGC 25
|
|
|
2960 |||||||||||||| ||||||| ||
|
|
|
2961 Subject 2344 ACATGAACAGCGCCCTGACCACCGC 2368</pre>
|
|
|
2962 </div>
|
|
|
2963
|
|
|
2964 </div>
|
|
|
2965
|
|
|
2966 </div></div>
|
|
|
2967 </section>
|
|
|
2968 </section>
|
|
|
2969
|
|
|
2970 <section class=match id=match49>
|
|
|
2971
|
|
|
2972 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
2973
|
|
|
2974 <section class=header>
|
|
|
2975
|
|
|
2976 <table class=headerdata>
|
|
|
2977 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2978 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2979 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2980 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2981 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2982 </table>
|
|
|
2983
|
|
|
2984 </section>
|
|
|
2985
|
|
|
2986 <section>
|
|
|
2987 <h2>No Hits</h2>
|
|
|
2988 <div class=grey>
|
|
|
2989 <table class=headerdata>
|
|
|
2990 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2991 </table>
|
|
|
2992 </div>
|
|
|
2993 </section>
|
|
|
2994 </section>
|
|
|
2995
|
|
|
2996 <section class=match id=match50>
|
|
|
2997
|
|
|
2998 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
2999
|
|
|
3000 <section class=header>
|
|
|
3001
|
|
|
3002 <table class=headerdata>
|
|
|
3003 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3004 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3005 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3006 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3007 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3008 </table>
|
|
|
3009
|
|
|
3010 </section>
|
|
|
3011
|
|
|
3012 <section>
|
|
|
3013 <h2>No Hits</h2>
|
|
|
3014 <div class=grey>
|
|
|
3015 <table class=headerdata>
|
|
|
3016 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
3017 </table>
|
|
|
3018 </div>
|
|
|
3019 </section>
|
|
|
3020 </section>
|
|
|
3021
|
|
|
3022 <section class=match id=match51>
|
|
|
3023
|
|
|
3024 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
3025
|
|
|
3026 <section class=header>
|
|
|
3027
|
|
|
3028 <table class=headerdata>
|
|
|
3029 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3030 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3031 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3032 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3033 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3034 </table>
|
|
|
3035
|
|
|
3036 </section>
|
|
|
3037
|
|
|
3038 <section>
|
|
|
3039 <h2>No Hits</h2>
|
|
|
3040 <div class=grey>
|
|
|
3041 <table class=headerdata>
|
|
|
3042 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
3043 </table>
|
|
|
3044 </div>
|
|
|
3045 </section>
|
|
|
3046 </section>
|
|
|
3047
|
|
|
3048 <section class=match id=match52>
|
|
|
3049
|
|
|
3050 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
3051
|
|
|
3052 <section class=header>
|
|
|
3053
|
|
|
3054 <table class=headerdata>
|
|
|
3055 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3056 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3057 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3058 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3059 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3060 </table>
|
|
|
3061
|
|
|
3062 </section>
|
|
|
3063
|
|
|
3064 <section>
|
|
|
3065 <h2>No Hits</h2>
|
|
|
3066 <div class=grey>
|
|
|
3067 <table class=headerdata>
|
|
|
3068 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
3069 </table>
|
|
|
3070 </div>
|
|
|
3071 </section>
|
|
|
3072 </section>
|
|
|
3073
|
|
|
3074 <section class=match id=match53>
|
|
|
3075
|
|
|
3076 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
3077
|
|
|
3078 <section class=header>
|
|
|
3079
|
|
|
3080 <table class=headerdata>
|
|
|
3081 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3082 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3083 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3084 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3085 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3086 </table>
|
|
|
3087
|
|
|
3088 </section>
|
|
|
3089
|
|
|
3090 <section>
|
|
|
3091 <h2>No Hits</h2>
|
|
|
3092 <div class=grey>
|
|
|
3093 <table class=headerdata>
|
|
|
3094 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
3095 </table>
|
|
|
3096 </div>
|
|
|
3097 </section>
|
|
|
3098 </section>
|
|
|
3099
|
|
|
3100 <section class=match id=match54>
|
|
|
3101
|
|
|
3102 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
3103
|
|
|
3104 <section class=header>
|
|
|
3105
|
|
|
3106 <table class=headerdata>
|
|
|
3107 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3108 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3109 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3110 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3111 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3112 </table>
|
|
|
3113
|
|
|
3114 </section>
|
|
|
3115
|
|
|
3116 <section>
|
|
|
3117 <h2>No Hits</h2>
|
|
|
3118 <div class=grey>
|
|
|
3119 <table class=headerdata>
|
|
|
3120 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
3121 </table>
|
|
|
3122 </div>
|
|
|
3123 </section>
|
|
|
3124 </section>
|
|
|
3125
|
|
|
3126 <section class=match id=match55>
|
|
|
3127
|
|
|
3128 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
3129
|
|
|
3130 <section class=header>
|
|
|
3131
|
|
|
3132 <table class=headerdata>
|
|
|
3133 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3134 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3135 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3136 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3137 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3138 </table>
|
|
|
3139
|
|
|
3140 </section>
|
|
|
3141
|
|
|
3142
|
|
|
3143 <section class=graphics>
|
|
|
3144 <h2>Graphic Summary</h2>
|
|
|
3145
|
|
|
3146 <div class=grey>
|
|
|
3147 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
3148
|
|
|
3149 <div class=defline id=defline55>
|
|
|
3150 Mouse-over to show defline and scores, click to show alignments
|
|
|
3151 </div>
|
|
|
3152
|
|
|
3153 <div class=graphic>
|
|
|
3154 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
3155 <div class=legend><div class=graphicrow>
|
|
|
3156 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
3157 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
3158 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
3159 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
3160 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
3161 </div></div>
|
|
|
3162 <div style="clear: left"></div>
|
|
|
3163
|
|
|
3164 <div class=tablewrapper>
|
|
|
3165
|
|
|
3166 <div class=scale>
|
|
|
3167 <div>query:</div>
|
|
|
3168 <div class=graphicrow>
|
|
|
3169 <div>
|
|
|
3170 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3171 <div>8</div>
|
|
|
3172 </div>
|
|
|
3173 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3174 <div>16</div>
|
|
|
3175 </div>
|
|
|
3176 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3177 <div>24</div>
|
|
|
3178 </div>
|
|
|
3179 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3180 <div>32</div>
|
|
|
3181 </div>
|
|
|
3182 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3183 <div>40</div>
|
|
|
3184 </div>
|
|
|
3185 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3186 <div>48</div>
|
|
|
3187 </div>
|
|
|
3188 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3189 <div>56</div>
|
|
|
3190 </div>
|
|
|
3191 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3192 <div>64</div>
|
|
|
3193 </div>
|
|
|
3194 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3195 <div>72</div>
|
|
|
3196 </div>
|
|
|
3197 <div class=graphicitem style="width: 2.7027027027%">
|
|
|
3198 <div> </div>
|
|
|
3199 <div class=lastlabel>74</div>
|
|
|
3200 </div>
|
|
|
3201 </div>
|
|
|
3202 </div>
|
|
|
3203 <div style="clear: left"></div>
|
|
|
3204 </div>
|
|
|
3205
|
|
|
3206 <a class=matchresult
|
|
|
3207 href="#hit55-1"
|
|
|
3208 onmouseover='document.getElementById("defline55").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
|
|
|
3209 onmouseout='document.getElementById("defline55").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
3210 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
|
|
|
3211 <div class="matchrow graphicrow">
|
|
|
3212 <div class="matchitem graphicitem"
|
|
|
3213 style="background-color: green; width: 100%"></div>
|
|
|
3214 </div>
|
|
|
3215 </a>
|
|
|
3216
|
|
|
3217 </div>
|
|
|
3218 </div>
|
|
|
3219 </div>
|
|
|
3220 </section>
|
|
|
3221
|
|
|
3222
|
|
|
3223
|
|
|
3224 <section class=descriptions>
|
|
|
3225 <h2>Descriptions</h2>
|
|
|
3226
|
|
|
3227 <div class=grey><div class=white>
|
|
|
3228 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
3229
|
|
|
3230 <table class=descriptiontable>
|
|
|
3231 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
3232 <tr>
|
|
|
3233 <th>Description</th>
|
|
|
3234 <th>Max score</th>
|
|
|
3235 <th>Total score</th>
|
|
|
3236 <th>Query cover</th>
|
|
|
3237 <th>E value</th>
|
|
|
3238 <th>Ident</th>
|
|
|
3239 <th>Accession</th>
|
|
|
3240 </tr>
|
|
|
3241 <tr>
|
|
|
3242 <td><div><a href="#hit55-1"
|
|
|
3243 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
|
|
|
3244 id="description55-1">
|
|
|
3245 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
|
|
|
3246 </a></div></td>
|
|
|
3247 <td>89.7</td>
|
|
|
3248 <td>89.7</td>
|
|
|
3249 <td>100%</td>
|
|
|
3250 <td>6.629e-23</td>
|
|
|
3251 <td>86%</td>
|
|
|
3252 <td><a href="http://example.com/example-genebank?id=Subject_7">Subject_7</a></td>
|
|
|
3253 </tr>
|
|
|
3254 </table>
|
|
|
3255
|
|
|
3256 </div></div>
|
|
|
3257 </section>
|
|
|
3258
|
|
|
3259
|
|
|
3260
|
|
|
3261 <section class=alignments>
|
|
|
3262 <h2>Alignments</h2>
|
|
|
3263
|
|
|
3264 <div class=grey><div class=white>
|
|
|
3265 <div class=alignment id=hit55-1>
|
|
|
3266
|
|
|
3267 <div class=linkheader>
|
|
|
3268 <div class=right><a href="#description55-1">Descriptions</a></div>
|
|
|
3269 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_7">Gene Bank</a>
|
|
|
3270 </div>
|
|
|
3271
|
|
|
3272 <div class=title>
|
|
|
3273 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
|
|
|
3274 <p class=titleinfo>
|
|
|
3275 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_7">Subject_7</a>
|
|
|
3276 <span class=b>Length:</span> 4180
|
|
|
3277 <span class=b>Number of Matches:</span> 1
|
|
|
3278 </p>
|
|
|
3279 </div>
|
|
|
3280
|
|
|
3281
|
|
|
3282 <div class=hotspot id=hotspot55-1-1>
|
|
|
3283 <p class=range>
|
|
|
3284 <span class=range>Range 1: 1516 to 1589</span>
|
|
|
3285 </p>
|
|
|
3286
|
|
|
3287 <table class=hotspotstable>
|
|
|
3288 <tr>
|
|
|
3289 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
3290 </tr>
|
|
|
3291 <tr>
|
|
|
3292 <td>89.7 bits(98)</td>
|
|
|
3293 <td>0.0</td>
|
|
|
3294 <td>64/74(86%)</td>
|
|
|
3295 <td>0/74(0%)</td>
|
|
|
3296 <td>Plus/Plus</td>
|
|
|
3297 </tr>
|
|
|
3298 </table>
|
|
|
3299
|
|
|
3300 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG 60
|
|
|
3301 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| |
|
|
|
3302 Subject 1516 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC 1575</pre>
|
|
|
3303 <pre class=alignmentgraphic>Query 61 TTCGCAGTCCAGAA 74
|
|
|
3304 ||||| ||||||||
|
|
|
3305 Subject 1576 TTCGCCGTCCAGAA 1589</pre>
|
|
|
3306 </div>
|
|
|
3307
|
|
|
3308 </div>
|
|
|
3309
|
|
|
3310 </div></div>
|
|
|
3311 </section>
|
|
|
3312 </section>
|
|
|
3313
|
|
|
3314 <section class=match id=match56>
|
|
|
3315
|
|
|
3316 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
3317
|
|
|
3318 <section class=header>
|
|
|
3319
|
|
|
3320 <table class=headerdata>
|
|
|
3321 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3322 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3323 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3324 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3325 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3326 </table>
|
|
|
3327
|
|
|
3328 </section>
|
|
|
3329
|
|
|
3330
|
|
|
3331 <section class=graphics>
|
|
|
3332 <h2>Graphic Summary</h2>
|
|
|
3333
|
|
|
3334 <div class=grey>
|
|
|
3335 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
3336
|
|
|
3337 <div class=defline id=defline56>
|
|
|
3338 Mouse-over to show defline and scores, click to show alignments
|
|
|
3339 </div>
|
|
|
3340
|
|
|
3341 <div class=graphic>
|
|
|
3342 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
3343 <div class=legend><div class=graphicrow>
|
|
|
3344 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
3345 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
3346 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
3347 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
3348 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
3349 </div></div>
|
|
|
3350 <div style="clear: left"></div>
|
|
|
3351
|
|
|
3352 <div class=tablewrapper>
|
|
|
3353
|
|
|
3354 <div class=scale>
|
|
|
3355 <div>query:</div>
|
|
|
3356 <div class=graphicrow>
|
|
|
3357 <div>
|
|
|
3358 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3359 <div>8</div>
|
|
|
3360 </div>
|
|
|
3361 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3362 <div>16</div>
|
|
|
3363 </div>
|
|
|
3364 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3365 <div>24</div>
|
|
|
3366 </div>
|
|
|
3367 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3368 <div>32</div>
|
|
|
3369 </div>
|
|
|
3370 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3371 <div>40</div>
|
|
|
3372 </div>
|
|
|
3373 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3374 <div>48</div>
|
|
|
3375 </div>
|
|
|
3376 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3377 <div>56</div>
|
|
|
3378 </div>
|
|
|
3379 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3380 <div>64</div>
|
|
|
3381 </div>
|
|
|
3382 <div class=graphicitem style="width: 10.8108108108%">
|
|
|
3383 <div>72</div>
|
|
|
3384 </div>
|
|
|
3385 <div class=graphicitem style="width: 2.7027027027%">
|
|
|
3386 <div> </div>
|
|
|
3387 <div class=lastlabel>74</div>
|
|
|
3388 </div>
|
|
|
3389 </div>
|
|
|
3390 </div>
|
|
|
3391 <div style="clear: left"></div>
|
|
|
3392 </div>
|
|
|
3393
|
|
|
3394 <a class=matchresult
|
|
|
3395 href="#hit56-1"
|
|
|
3396 onmouseover='document.getElementById("defline56").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
|
|
|
3397 onmouseout='document.getElementById("defline56").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
3398 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
|
|
|
3399 <div class="matchrow graphicrow">
|
|
|
3400 <div class="matchitem graphicitem"
|
|
|
3401 style="background-color: green; width: 100%"></div>
|
|
|
3402 </div>
|
|
|
3403 </a>
|
|
|
3404
|
|
|
3405 </div>
|
|
|
3406 </div>
|
|
|
3407 </div>
|
|
|
3408 </section>
|
|
|
3409
|
|
|
3410
|
|
|
3411
|
|
|
3412 <section class=descriptions>
|
|
|
3413 <h2>Descriptions</h2>
|
|
|
3414
|
|
|
3415 <div class=grey><div class=white>
|
|
|
3416 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
3417
|
|
|
3418 <table class=descriptiontable>
|
|
|
3419 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
3420 <tr>
|
|
|
3421 <th>Description</th>
|
|
|
3422 <th>Max score</th>
|
|
|
3423 <th>Total score</th>
|
|
|
3424 <th>Query cover</th>
|
|
|
3425 <th>E value</th>
|
|
|
3426 <th>Ident</th>
|
|
|
3427 <th>Accession</th>
|
|
|
3428 </tr>
|
|
|
3429 <tr>
|
|
|
3430 <td><div><a href="#hit56-1"
|
|
|
3431 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
|
|
|
3432 id="description56-1">
|
|
|
3433 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
|
|
|
3434 </a></div></td>
|
|
|
3435 <td>89.7</td>
|
|
|
3436 <td>89.7</td>
|
|
|
3437 <td>100%</td>
|
|
|
3438 <td>6.629e-23</td>
|
|
|
3439 <td>86%</td>
|
|
|
3440 <td><a href="http://example.com/example-genebank?id=Subject_8">Subject_8</a></td>
|
|
|
3441 </tr>
|
|
|
3442 </table>
|
|
|
3443
|
|
|
3444 </div></div>
|
|
|
3445 </section>
|
|
|
3446
|
|
|
3447
|
|
|
3448
|
|
|
3449 <section class=alignments>
|
|
|
3450 <h2>Alignments</h2>
|
|
|
3451
|
|
|
3452 <div class=grey><div class=white>
|
|
|
3453 <div class=alignment id=hit56-1>
|
|
|
3454
|
|
|
3455 <div class=linkheader>
|
|
|
3456 <div class=right><a href="#description56-1">Descriptions</a></div>
|
|
|
3457 <a class="linkheader" href="http://example.com/example-genebank?id=Subject_8">Gene Bank</a>
|
|
|
3458 </div>
|
|
|
3459
|
|
|
3460 <div class=title>
|
|
|
3461 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
|
|
|
3462 <p class=titleinfo>
|
|
|
3463 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_8">Subject_8</a>
|
|
|
3464 <span class=b>Length:</span> 4983
|
|
|
3465 <span class=b>Number of Matches:</span> 1
|
|
|
3466 </p>
|
|
|
3467 </div>
|
|
|
3468
|
|
|
3469
|
|
|
3470 <div class=hotspot id=hotspot56-1-1>
|
|
|
3471 <p class=range>
|
|
|
3472 <span class=range>Range 1: 2319 to 2392</span>
|
|
|
3473 </p>
|
|
|
3474
|
|
|
3475 <table class=hotspotstable>
|
|
|
3476 <tr>
|
|
|
3477 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
3478 </tr>
|
|
|
3479 <tr>
|
|
|
3480 <td>89.7 bits(98)</td>
|
|
|
3481 <td>0.0</td>
|
|
|
3482 <td>64/74(86%)</td>
|
|
|
3483 <td>0/74(0%)</td>
|
|
|
3484 <td>Plus/Plus</td>
|
|
|
3485 </tr>
|
|
|
3486 </table>
|
|
|
3487
|
|
|
3488 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG 60
|
|
|
3489 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| |
|
|
|
3490 Subject 2319 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC 2378</pre>
|
|
|
3491 <pre class=alignmentgraphic>Query 61 TTCGCAGTCCAGAA 74
|
|
|
3492 ||||| ||||||||
|
|
|
3493 Subject 2379 TTCGCCGTCCAGAA 2392</pre>
|
|
|
3494 </div>
|
|
|
3495
|
|
|
3496 </div>
|
|
|
3497
|
|
|
3498 </div></div>
|
|
|
3499 </section>
|
|
|
3500 </section>
|
|
|
3501
|
|
|
3502 </div>
|
|
|
3503
|
|
|
3504 <footer>
|
|
|
3505 This page was generated by <a href="https://github.com/thehyve/blast2html/">blast2html</a>.
|
|
|
3506 </footer>
|
|
|
3507 </body>
|
|
|
3508 </html>
|
|
|
3509
|
