blast2html: Blast output page example_files/results.js annotate

annotate Blast output page example_files/results.js @ 27:4e6ac737ba17

improve the galaxy html stripping warning; make sure the tool can find the template from within galaxy

author	Jan Kanis <jan.code@jankanis.nl>
date	Thu, 15 May 2014 16:46:09 +0200
parents	bad241dc701f
children

rev	line source
0 bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	1 // JScript source code
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	2
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	3 //Display Reformat page button only after the whole page is loaded
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	4
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	5 function ReformatPageEvent()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	6 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	7 var refPageLink = document.getElementById("refPage");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	8
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	9 //alert(refPageLink);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	10 //alert(refPageLink.getAttribute("submitForm"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	11 var submitForm = refPageLink.getAttribute("submitForm");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	12 alert(submitForm);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	13 if(refPageLink && submitForm) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	14 utils.addEvent(refPageLink,
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	15 "click",
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	16 function() {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	17 document.getElementById(submitForm).submit();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	18 },
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	19 false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	20 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	21 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	22
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	23
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	24 function SubmitEvent(linkID)
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	25 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	26
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	27 var link = document.getElementById(linkID);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	28 //alert(link.getAttribute("submitForm"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	29 var submitForm = link.getAttribute("submitForm");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	30 if(link && submitForm) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	31 utils.addEvent(link,
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	32 "click",
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	33 function() {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	34 document.getElementById(submitForm).submit();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	35 },
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	36 false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	37 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	38 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	39
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	40
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	41 function SubmitEventSave(linkID)
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	42 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	43
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	44 var link = document.getElementById(linkID);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	45 //alert(link.getAttribute("submitForm"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	46 var submitForm = link.getAttribute("submitForm");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	47 if(link && submitForm) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	48 utils.addEvent(link,
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	49 "click",
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	50 function() {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	51 //$(submitForm).CMD.value = "GetSaved";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	52 document.getElementById(submitForm).submit();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	53 },
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	54 false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	55 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	56 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	57
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	58
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	59
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	60
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	61 //This function creates submit form event on click
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	62 //form submitted is defined in submitForm attribute
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	63 //It also copies params from forms[0] (search paramateres) created by formatter
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	64 function SubmitEventNew(linkID)
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	65 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	66
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	67 var link = document.getElementById(linkID);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	68 //alert(link.getAttribute("submitForm"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	69 if(!link) return;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	70 var submitForm = link.getAttribute("submitForm");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	71 if(link && submitForm) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	72 utils.addEvent(link,
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	73 "click",
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	74 function() {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	75 document.forms[0].CMD.value = "";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	76 if(document.forms[0].PAGE_TYPE) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	77 document.forms[0].PAGE_TYPE.value = "";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	78 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	79 var s = document.forms[0].innerHTML;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	80 var form = $(submitForm);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	81 form.innerHTML = s + form.innerHTML;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	82 form.submit();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	83 },
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	84 false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	85 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	86 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	87
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	88 function GetResults()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	89 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	90 form = $("results");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	91 form.QUERY_INDEX.value = $("queryList")[$("queryList").selectedIndex].value;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	92 form.submit();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	93 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	94
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	95 function isIdIn(id, idArray){
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	96 var idSeen=false;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	97
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	98 for(i=0; i<idArray.length; i++){
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	99 if(id==idArray[i]){
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	100 idSeen=true;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	101 break;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	102 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	103 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	104 return idSeen;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	105 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	106
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	107 function GetSelectedSeqString(formName)
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	108 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	109 var selSeqs = "";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	110 var idArray=new Array();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	111 forms = document.getElementsByName(formName);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	112 for(var j=0; j < forms.length; j++){
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	113 for(var i=0; i < forms[j].elements.length; i++){
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	114 var theElem=forms[j].elements[i];
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	115 if(theElem.type=="checkbox"&&theElem.name=="getSeqGi"&&theElem.checked){
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	116 if(!isIdIn(theElem.value, idArray)){
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	117 idArray[idArray.length]=theElem.value;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	118 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	119 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	120 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	121 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	122 selSeqs = idArray.join();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	123 return selSeqs;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	124 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	125
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	126 function ViewSelectedSeqs(e)
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	127 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	128 var submitForm = $("submitterTop");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	129 var targetForm = submitForm.getAttribute("seqsForm");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	130 $("selSeqs").value = GetSelectedSeqString(targetForm);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	131 submitForm.submit();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	132 utils.preventDefault(e);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	133 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	134
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	135
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	136 function ViewSelectedSeqTree()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	137 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	138 var submitForm = $("treesubmitterTop");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	139 var targetForm = submitForm.getAttribute("seqsForm");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	140 $("seqSet").value = GetSelectedSeqString(targetForm);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	141 $("scrWidth").value = screen.width;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	142 $("scrHeight").value = screen.height;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	143 submitForm.submit();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	144 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	145
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	146 function ViewTree(linkID) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	147 link = document.getElementById(linkID);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	148 var target = link.target;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	149 winRef = window.open(link.href + "&screenWidth=" + screen.width + "&screenHeight=" + screen.height, target);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	150 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	151
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	152 function ViewSelectedSeqMultiAlign()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	153 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	154 var submitForm = $("multisubmitterTop");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	155 var targetForm = submitForm.getAttribute("seqsForm");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	156 $("seqSetM").value = GetSelectedSeqString(targetForm);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	157 submitForm.submit();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	158 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	159
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	160
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	161
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	162 function selectAllSeqs()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	163 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	164 var formName = this.getAttribute("seqsForm");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	165 forms = document.getElementsByName(formName);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	166 for(var j=0; j < forms.length; j++){
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	167 for(var i=0; i < forms[j].elements.length; i++){
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	168 //for(var i=0; i < document.forms[formName].elements.length; i++){
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	169 var theElem=forms[j].elements[i];
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	170 if(theElem.type=="checkbox"&&theElem.name=="getSeqGi"){
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	171 theElem.checked=this.checked;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	172 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	173 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	174 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	175 links = document.getElementsByName("selectAll");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	176 for(var i=0; i < links.length;i++) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	177 if(links[i] != this) links[i].checked = this.checked;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	178 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	179 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	180
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	181
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	182 function InitSeqAlignLinks()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	183 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	184 var links = document.getElementsByName("getSeqs");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	185 for(var i=0; i < links.length;i++) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	186 utils.addEvent(links[i],"click",ViewSelectedSeqs,false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	187 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	188 links = document.getElementsByName("treeView");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	189 for(var i=0; i < links.length;i++) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	190 utils.addEvent(links[i],"click",ViewSelectedSeqTree,false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	191 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	192 links = document.getElementsByName("mltiAln");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	193 for(var i=0; i < links.length;i++) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	194 utils.addEvent(links[i],"click",ViewSelectedSeqMultiAlign,false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	195 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	196 links = document.getElementsByName("selectAll");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	197 for(var i=0; i < links.length;i++) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	198 utils.addEvent(links[i],"click",selectAllSeqs,false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	199 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	200
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	201 if($("showAlign"))
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	202 utils.addEvent($("showAlign"),"click",showHideLinks,false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	203 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	204
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	205 function InitDownLoad()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	206 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	207 var deltaBlast = ($("diThresh") && $("diThresh").value != "") ? true : false;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	208 if (!deltaBlast && ($("stepNumber").value == "" \|\| $("stepNumber").value < 2)) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	209 utils.addClass($("dnPSSMPar"),"hidden");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	210 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	211 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	212 function Reformat()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	213 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	214 if(utils.hasClass($("FormatForm").FORMAT_ORGANISM,"orgHint")) $("FormatForm").FORMAT_ORGANISM.value = "";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	215
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	216 $("FormatForm").submit();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	217 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	218 function InitCustomButton(bn)
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	219 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	220 utils.addEvent(bn, "mouseover", function() {this.src = this.getAttribute("mouseovImg");}, false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	221 utils.addEvent(bn, "mouseout", function() {this.src = this.getAttribute("mouseoutImg");}, false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	222 utils.addEvent(bn, "mousedown", function() {this.src = this.getAttribute("mousedownImg");}, false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	223 utils.addEvent(bn, "mouseup", function() {this.src = this.getAttribute("mouseupImg");}, false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	224 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	225
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	226 function InitAllCustomButtons()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	227 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	228 if($("go")) InitCustomButton($("go"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	229 if($("dn")) InitCustomButton($("dn"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	230 if($("onPageReformat")) InitCustomButton($("onPageReformat"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	231 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	232 function showHideLinks()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	233 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	234 var links = document.getElementsByName("selectAll");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	235 for(var i=0; i < links.length;i++) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	236 //This is done since IE does not recognize getElementsByName for span elem
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	237 var allLinks = utils.getParent(links[i]);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	238 var removeClass,addClass;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	239 if(utils.hasClass(allLinks,"shownInl")) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	240 removeClass="shownInl";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	241 addClass="hidden";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	242 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	243 else {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	244 removeClass="hidden";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	245 addClass="shownInl";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	246 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	247 utils.removeClass(allLinks,removeClass);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	248 utils.addClass(allLinks,addClass);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	249 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	250 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	251 /remove this function /
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	252 function InitHelpLinks()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	253 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	254 for(var i=1; i <= 11;i++) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	255 InitToggleEvent($("hlp" + i));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	256 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	257 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	258 //This function is used for collapsible deflines onmouseover="showInfo(this)"
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	259 //Initialized in showdefline.cpp
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	260 function showInfo(elem)
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	261 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	262 var targetElem = $("info_" + elem.id);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	263 if(!targetElem) return;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	264 if(elem.getAttribute("init") == "on") return;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	265
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	266 Toggle.addTarget(elem, targetElem);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	267 elem.setAttribute("init","on");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	268 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	269
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	270 function InitPsiBlast()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	271 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	272 //utils.addEvent($("ttt"),"keyup",SetHitlistSize,false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	273 var hts = document.getElementsByName("HITLIST_SIZE");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	274 for(var i=0; i < hts.length;i++) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	275 utils.addEvent(hts[i],"keyup",SetHitlistSize,false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	276 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	277 if($("psiInp")) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	278 var numSubsets = $("psiInp").getAttribute("numSubsets");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	279 for(var i=1; i <= numSubsets;i++) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	280 if ($("alnPos" + i)) InitToggleEvent($("alnPos" + i));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	281 if ($("deflnG" + i)) InitToggleEvent($("deflnG" + i));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	282 if ($("deflnB" + i)) InitToggleEvent($("deflnB" + i));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	283 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	284 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	285 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	286
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	287 function SetHitlistSize()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	288 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	289 var hts = document.getElementsByName("HITLIST_SIZE");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	290 for(var i=0; i < hts.length;i++) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	291 if(this != hts[i]) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	292 hts[i].value = this.value;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	293 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	294 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	295 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	296 function InitToggleEvent(toggleNode)
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	297 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	298 if(toggleNode) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	299 var srcid = toggleNode.getAttribute("toggle");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	300 if(srcid) Toggle.addTarget(srcid, toggleNode);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	301 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	302 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	303
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	304 function InitIFrameLinks()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	305 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	306 CheckIframe($("RSIFrameNoRes"),"prlink");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	307 CheckIframe($("RSIFrameDesc"),"prlink");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	308 CheckIframe($("RSIFrameAln"),"prlink");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	309 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	310
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	311 function CheckIframe(iframe,contentElemID)
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	312 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	313 if(!iframe) return;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	314
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	315 var iframeDoc;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	316
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	317 if(iframe.contentDocument) {//Firefox
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	318 iframeDoc = iframe.contentDocument;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	319 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	320 else if (iframe.contentWindow) {//IE
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	321 iframeDoc = iframe.contentWindow.document;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	322 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	323 else if(iframe.document) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	324 iframeDoc = iframe.document;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	325 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	326 if(iframeDoc){
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	327 if(iframeDoc.getElementById(contentElemID)) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	328 utils.addClass(iframe,"shown");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	329 utils.removeClass(iframe,"hidden");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	330 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	331 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	332 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	333
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	334
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	335 function InitHitMatrix()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	336 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	337 if($("bl2seImg")) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	338
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	339 utils.addEvent($("hitmtImg"),"load",
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	340 function() {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	341 utils.addClass($("bl2seImg"),"shown");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	342 utils.removeClass($("bl2seImg"),"hidden");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	343
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	344 },
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	345 false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	346 utils.addEvent($("showHitMatrix"),"click",
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	347 function() {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	348 $("hitmtImg").src= $("hitmtImg").getAttribute("imgsrc");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	349 if(utils.hasClass($("htmb"),"shown")) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	350 utils.addClass($("htmb"),"hidden");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	351 utils.removeClass($("htmb"),"shown");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	352 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	353 else {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	354 utils.addClass($("htmb"),"shown");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	355 utils.removeClass($("htmb"),"hidden");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	356 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	357 },
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	358 false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	359
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	360 if($("blastSpec") && $("blastSpec").value=="GlobalAln") {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	361 $("hitmtImg").src= $("hitmtImg").getAttribute("imgsrc");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	362 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	363 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	364 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	365
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	366
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	367
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	368
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	369
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	370 function SetFormSubmitEvent()
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	371 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	372 var el = $("refPage");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	373 if(el) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	374 SubmitEventNew("refPage");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	375 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	376 SubmitEventNew("frmPage");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	377 el = $("searchOptions");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	378 if(el) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	379 SubmitEventNew("searchOptions");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	380 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	381 el = $("saveSearchOptions");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	382 if(el) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	383 SubmitEventNew("saveSearchOptions");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	384 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	385 //SubmitEventNew("breadCrSearchOptions");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	386 list = $("queryList");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	387 if(list) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	388 utils.addEvent(list,"change",GetResults,false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	389 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	390
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	391 list = $("go");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	392 if(list) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	393 utils.addEvent(list,"click",GetResults,false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	394 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	395
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	396
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	397 list= $("onPageReformat");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	398 if(list) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	399 utils.addEvent(list,"click",Reformat,false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	400 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	401
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	402 if ($("cddResults") && $("statInfo")) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	403 jQuery($("cddResults")).ncbitoggler('toggle');
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	404 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	405 //New design still uses toggle
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	406 if ($("showCDD")) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	407 InitToggleEvent($("cddInfo"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	408 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	409 InitToggleEvent($("refInfo"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	410 InitToggleEvent($("resStat"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	411 InitToggleEvent($("dbDetails"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	412 InitToggleEvent($("graphicInfo"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	413 InitToggleEvent($("descrInfo"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	414 InitToggleEvent($("alignInfo"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	415 InitToggleEvent($("ovrInfo"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	416 InitToggleEvent($("queryInfo"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	417 InitToggleEvent($("hitMatrixInfo"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	418 InitToggleEvent($("bl2ovrInfo"));
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	419 //Init only for PSI blastfse
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	420 if($("prevRID")) InitPsiBlast();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	421 InitSeqAlignLinks();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	422 InitAllCustomButtons();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	423 if($("dnPSSMPar")) InitDownLoad();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	424 InitHitMatrix();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	425 if($("noRes")) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	426 if($("hitCvs")) utils.addClass($("hitCvs"),"hidden");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	427 if($("hitText")) utils.addClass($("hitText"),"hidden");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	428 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	429 InitIFrameLinks();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	430 showDbDetails(); //fill behind the scene
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	431 if ($("showDetails") && utils.hasClass($("showDetails"), "shown")) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	432 utils.addEvent($("showDetails"), "click", showDbDetails, false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	433 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	434 initContentWidth();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	435 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	436
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	437 function initContentWidth() {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	438 var lineLengthElem = $("FormatForm").LINE_LENGTH;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	439 if (lineLengthElem) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	440 var lineLength = parseInt(lineLengthElem[lineLengthElem.selectedIndex].value);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	441 if (parseInt(lineLengthElem.getAttribute("defval")) == lineLength) return;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	442
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	443 var charWidth = (navigator.userAgent.match(/ie/i)) ? 8 : 7;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	444 var minWidth = (lineLength + parseInt(17)) * charWidth;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	445
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	446
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	447 var alignView = $("FormatForm").ALIGNMENT_VIEW;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	448 var formatType = $("FormatForm").FORMAT_TYPE;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	449 var queryAnch = formatType[formatType.selectedIndex].value == "HTML" && (alignView[alignView.selectedIndex].value != "Pairwise" && alignView[alignView.selectedIndex].value != "PairwiseWithIdentities");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	450
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	451 var addWidth = ($("FormatForm").OLD_VIEW.checked \|\| queryAnch) ? 250 : 350;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	452
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	453 minWidth = minWidth + parseInt(addWidth) + "px";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	454 jQuery($("content")).css("min-width", minWidth);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	455 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	456
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	457 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	458
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	459
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	460
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	461
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	462
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	463 function ShowHideAlnDeflines(alnID, checkbx) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	464 var dflTableID = "dln_" + alnID;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	465 if ($(dflTableID)) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	466 var rmClass, addClass;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	467 if (checkbx.checked) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	468 rmClass = "hidden";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	469 addClass = "shown";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	470 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	471 else {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	472 rmClass = "shown";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	473 addClass = "hidden";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	474 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	475 var elems = $C(rmClass, "class", $(dflTableID), "tr");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	476 if (elems) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	477 //alert(elems.length);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	478 for (var i = 0; i < elems.length; i++) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	479 utils.removeClass(elems[i], rmClass);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	480 utils.addClass(elems[i], addClass);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	481 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	482 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	483 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	484 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	485
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	486 function SortAln(e, sortLink, sortItem) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	487 var p = utils.getParent(sortLink);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	488 var p = utils.getParent(p);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	489 p_TD = utils.getParent(p);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	490 p_TR = utils.getParent(p_TD);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	491 if (utils.hasClass(p_TR, "dflnAln")) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	492 p_TD.innerHTML = "Reading seqaligns...";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	493 var gi = p_TD.id.substr(2);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	494 var rid = p_TD.getAttribute("rid");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	495 getAlignSort(rid, gi, p_TD, sortItem);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	496 e = e \|\| window.event;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	497 utils.preventDefault(e);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	498 return;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	499 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	500 var links = document.getElementsByName("alnSort");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	501 if (links.length >= sortItem) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	502 var href = links[sortItem].href.replace(new RegExp("selectAllTop.*(&\|$)"), "");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	503 var hrefLn = sortLink.href.replace(new RegExp(".*#"), "");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	504 sortLink.href = href + hrefLn;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	505 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	506 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	507
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	508
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	509
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	510 var fullArr;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	511 var numDbs;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	512 function showDbDetails(e,dbSetIndex)
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	513 {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	514 if (!($("dbPlusSpecies"))) return; //No org display
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	515 if ($("dbPlusSpecies").getAttribute("init") == "on" && dbSetIndex == null) return;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	516 $("dbPlusSpecies").setAttribute("init", "on");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	517
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	518 dbInfoUrl = "getDBInfo.cgi";
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	519 var rp = new RemoteDataProvider(dbInfoUrl);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	520 rp.minArr = 10;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	521
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	522 if (!fullArr) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	523 var arr = $("results").DATABASE.value.split(" ");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	524 numDbs = arr.length;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	525 if (arr.length > rp.minArr) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	526 fullArr = new Array();
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	527 while (arr.length > 1) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	528 var arrNew = arr.splice(0, rp.minArr); //does not include stopindex
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	529 fullArr.push(arrNew);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	530 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	531 if (!dbSetIndex) dbSetIndex = 0;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	532 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	533 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	534
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	535 rp.onSuccess = function(obj) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	536 var navDB = document.createElement("div");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	537 if (fullArr) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	538 var prevLink, nextLink, firstLink, lastLink;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	539 if (this.currDbSetIndex >= 1) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	540 var firstStart = 1;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	541 var firstEnd = firstStart + fullArr[0].length - 1;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	542 firstLink = document.createElement("a");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	543 jQuery(firstLink).attr("href", "#");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	544 jQuery(firstLink).attr("id", "firstDbSet");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	545 jQuery(firstLink).attr("onclick", "showDbDetails(event,0);");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	546 jQuery(firstLink).attr("title", "Databases " + firstStart + "-" + firstEnd);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	547 jQuery(firstLink).html("First " + this.minArr + " dbs");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	548
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	549 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	550 if (this.currDbSetIndex >= 1) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	551 var prevStart = (this.currDbSetIndex - 1) * this.minArr + 1;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	552 var prevEnd = prevStart + fullArr[this.currDbSetIndex - 1].length - 1;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	553 prevLink = document.createElement("a");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	554 jQuery(prevLink).attr("href", "#");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	555 jQuery(prevLink).attr("id", "prevDbSet");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	556 jQuery(prevLink).attr("onclick", "showDbDetails(event," + (this.currDbSetIndex - 1) + ");");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	557 jQuery(prevLink).attr("title", "Databases " + prevStart + "-" + prevEnd);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	558 jQuery(prevLink).html("Prev " + this.minArr + " dbs");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	559 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	560
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	561 if (this.currDbSetIndex < fullArr.length - 1) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	562 var nextStart = (this.currDbSetIndex + 1) * this.minArr + 1;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	563 var nextEnd = nextStart + fullArr[this.currDbSetIndex + 1].length - 1;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	564 nextLink = document.createElement("a");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	565 jQuery(nextLink).attr("href", "#");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	566 jQuery(nextLink).attr("id", "nextDbSet");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	567 jQuery(nextLink).attr("onclick", "showDbDetails(event," + (this.currDbSetIndex + 1) + ");");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	568 jQuery(nextLink).attr("title", "Databases " + nextStart + "-" + nextEnd);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	569 jQuery(nextLink).html("Next " + this.minArr + " dbs");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	570 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	571 if (this.currDbSetIndex < fullArr.length - 1) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	572 var lastInd = fullArr.length - 1;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	573 var lastStart = numDbs - fullArr[lastInd].length;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	574 var lastEnd = numDbs;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	575 lastLink = document.createElement("a");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	576 jQuery(lastLink).attr("href", "#");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	577 jQuery(lastLink).attr("id", "lastDbSet");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	578 jQuery(lastLink).attr("onclick", "showDbDetails(event," + lastInd + ");");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	579 jQuery(lastLink).attr("title", "Databases " + lastStart + "-" + lastEnd);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	580 jQuery(lastLink).html("Last " + this.minArr + " dbs");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	581 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	582
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	583
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	584 jQuery(navDB).attr("id", "addDbSet");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	585 if (firstLink) jQuery(navDB).append(firstLink);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	586 if (prevLink) jQuery(navDB).append(prevLink);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	587 if (lastLink) jQuery(navDB).append(lastLink);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	588 if (nextLink) jQuery(navDB).append(nextLink);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	589 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	590
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	591 jQuery($("dbPlusSpecies")).html(navDB);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	592 jQuery(navDB).after(obj.responseText);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	593 if (fullArr) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	594 var cap = jQuery($("dbSpecies")).find("caption");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	595 if (cap) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	596 var currStart = (this.currDbSetIndex) * this.minArr + 1;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	597 var currEnd = currStart + fullArr[this.currDbSetIndex].length - 1;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	598 var capText = cap.html() + "<div class=\"cpAdd\"> Databases " + currStart + "-" + currEnd;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	599 cap.html(capText);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	600 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	601 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	602 };
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	603 rp.onError = function(obj) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	604 $("dbPlusSpecies").innerHTML += "error, requests:" + this.iActiveRequests + " status:" + obj.status;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	605 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	606 var dbs;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	607 if (fullArr) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	608 rp.currDbSetIndex = dbSetIndex;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	609 var currArr = fullArr[dbSetIndex];
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	610 dbs = currArr.join(",");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	611 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	612 else {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	613 dbs = $("results").DATABASE.value.replace(/ /g, ",");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	614 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	615
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	616 rp.Request("CMD=getDBOrg&DATABASE=" + dbs, "POST");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	617 if(e) utils.preventDefault(e);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	618 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	619
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	620 function synchronizeCheck(id, formName, inputName, isChecked) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	621
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	622 for (var i = 0; i < document.forms[formName].elements.length; i++) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	623 var theElem = document.forms[formName].elements[i];
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	624 if (theElem.type == "checkbox" && theElem.name == inputName && id == theElem.value) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	625 theElem.checked = isChecked;
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	626
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	627 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	628 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	629
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	630 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	631
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	632 utils.addEvent(window,
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	633 "load", SetFormSubmitEvent,
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	634 false);
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	635
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	636
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	637 /* If user agent has "safari" in it, include safari-specific stylesheet. */
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	638 if (navigator.userAgent.match(/safari/i) \|\| navigator.userAgent.match(/opera/i)) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	639 document.write("<link rel='stylesheet' type='text/css' href='css/safari-descriptions.css' media='screen'/>");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	640 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	641 if (navigator.userAgent.match(/opera/i)) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	642 document.write("<link rel='stylesheet' type='text/css' href='css/opera-descriptions.css' media='screen'/>");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	643 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	644 if (navigator.userAgent.match(/firefox/i) \|\| navigator.userAgent.match(/safari/i)) {
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	645 document.write("<link rel='stylesheet' type='text/css' href='css/firefox-descriptions.css' media='screen'/>");
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	646 }
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	647
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	648
bad241dc701f add example input blast xml and output html page Jan Kanis <jan.code@jankanis.nl> parents: diff changeset	649