Mercurial > repos > jankanis > blast2html

annotate Blast output page example_files/jquery_004.js @ 20:53cd304c5f26

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Add index for multiple results; fix layout of query ruler for edge case The query ruler did not layout nicely if the last segment was too short to contain the text. For very short last segments the text is now displayed after the ruler.
author Jan Kanis <jan.code@jankanis.nl>
date Wed, 14 May 2014 16:20:29 +0200
parents bad241dc701f
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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bad241dc701f add example input blast xml and output html page
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1 jQuery.widget("ui.ncbiautocomplete",{options:{webserviceUrl:"/portal/utils/autocomp.fcgi",isUrlRelative:false,dictionary:"",responseFormat:"old",disableUrl:null,prefUrl:null,zIndex:1001,isEnabled:true,hasRelatedMatches:false,minLength:2,expandPauseTime:400,maxListLimit:null,isCrossDomain:false,disableCache:false,requireValidation:false,queryParameter:"q"},_create:function(){if(this.options.localData&&!this.options.dictionary)this.options.dictionary="local";this._storeTitleAttribute();this._createOptionsBox();
bad241dc701f add example input blast xml and output html page
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2 this._addAttributes();this._setHandlers();this._setWebServicePath();this._lastEnteredTerm="";this._setSGData()},_storeTitleAttribute:function(){this.element.data("ncbiautocompleteOriginalTitle",this.element.attr("title"))},destroy:function(){jQuery.Widget.prototype.destroy.apply(this,arguments);this.element.removeAttr("title");this._destroyAria();this._destroyHandlers();var a=this.element.data("ncbiautocompleteOriginalTitle");a&&this.element.attr("title",a)},_destroyOptionsBox:function(){jQuery.ui.ncbiautocomplete._globalOptionsList.optionsBox!=
bad241dc701f add example input blast xml and output html page
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3 null&&jQuery.ui.ncbiautocomplete._globalOptionsList.optionsBox.remove()},_destroyHandlers:function(){this.element.off("keypress keydown keyup cut paste")},_destroyAria:function(){this.element.removeAttr("aria-haspopup").removeAttr("aria-autocomplete").removeAttr("role").removeAttr("autocomplete")},_activeRequest:null,_keys:{up:38,down:40,enter:13,escape:27,tab:9,shift:16},_setSGData:function(){this.sgData={jsevent:"autocomplete",userTyped:"",hasScrolled:false,usedArrows:false,selectionAction:"",optionSelected:"",
bad241dc701f add example input blast xml and output html page
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4 optionIndex:-1,optionsCount:-1}},_addAttributes:function(){this.element.attr({title:"Use up and down arrows to choose an item from the autocomplete.","aria-haspopup":true,"aria-autocomplete":"list",role:"textbox"})},_setHandlers:function(){var a=this;jQuery(this.element).focus(function(){a._focused()}).keypress(function(c){a._keyPress(c,"press")}).keydown(function(c){a._keyPress(c,"down")}).keyup(function(c){a._keyUp(c)}).bind("cut paste",function(){a._changeFired()}).attr("AUTOCOMPLETE","OFF");var b=
bad241dc701f add example input blast xml and output html page
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5 jQuery(this.element)[0];b.autocomplete="off";b.AUTOCOMPLETE="OFF";jQuery(window).resize(function(){a._isActive&&a._positionOptionsBox()});jQuery(document).click(function(c){a._checkClickEvent(c)});jQuery(this._gol.optionsBox).hover(function(){if(a._isActive)a._isOptionsBoxFocused=true},function(){if(a._isActive)a._isOptionsBoxFocused=false})},_isOptionsBoxFocused:false,_createOptionsBox:function(){if(jQuery.ui.ncbiautocomplete._globalOptionsList===null){jQuery.ui.ncbiautocomplete._globalOptionsList=
bad241dc701f add example input blast xml and output html page
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6 {};var a=jQuery("div.grid");a=a.length===1?a:jQuery(document.body);jQuery.ui.ncbiautocomplete._globalOptionsList.optionsBox=jQuery("<div class='ui-ncbiautocomplete-holder shadow' aria-live='assertive'></div>").appendTo(a);jQuery.ui.ncbiautocomplete._globalOptionsList.optionsList=jQuery("<ul class='ui-ncbiautocomplete-options' role='listbox' aria-activedescendant=''></ul>").appendTo(jQuery(jQuery.ui.ncbiautocomplete._globalOptionsList.optionsBox));jQuery.ui.ncbiautocomplete._globalOptionsList.optionsActions=
bad241dc701f add example input blast xml and output html page
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7 jQuery("<div class='ui-ncbiautocomplete-actions shadow'></div>").appendTo(jQuery(jQuery.ui.ncbiautocomplete._globalOptionsList.optionsBox));jQuery.ui.ncbiautocomplete._globalOptionsList.prefLink=jQuery("<a href='#' class='ui-ncbiautocomplete-link-pref'>Preferences</a>").appendTo(jQuery(jQuery.ui.ncbiautocomplete._globalOptionsList.optionsActions));jQuery.ui.ncbiautocomplete._globalOptionsList.turnOffLink=jQuery("<a href='#' class='ui-ncbiautocomplete-link-off'>Turn off</a>").appendTo(jQuery(jQuery.ui.ncbiautocomplete._globalOptionsList.optionsActions));
bad241dc701f add example input blast xml and output html page
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8 jQuery.ui.ncbiautocomplete._globalOptionsList.isIE6=jQuery.browser.msie&&parseInt(jQuery.browser.version,10)<7;if(jQuery.ui.ncbiautocomplete._globalOptionsList.isIE6)jQuery.ui.ncbiautocomplete._globalOptionsList.optionsBox.iframe=jQuery("<iframe src='javascript:\"\";' class='ui-ncbiautocomplete-iframe' marginwidth='0' marginheight='0' align='bottom' scrolling='no' frameborder='0'></iframe>").appendTo(document.body)}this._gol=jQuery.ui.ncbiautocomplete._globalOptionsList},_positionOptionsBox:function(){if(this._gol.activeElement){var a=
bad241dc701f add example input blast xml and output html page
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9 jQuery(this.element),b=jQuery(this._gol.activeElement);a=a.attr("id")||a[0];b=b.attr("id")||b[0];a!==b&&this._hideOptions()}var c=this;if(this._gol.activeElement!==this.element){b=this.options.prefUrl!==null?"block":"none";a=this.options.disableUrl!==null?"block":"none";var e=b==="block"||a==="block"?"block":"none";jQuery(this._gol.prefLink).css("display",b).attr("href",this.options.prefUrl).unbind("click").click(function(){c._prefLinkClick()});jQuery(this._gol.turnOffLink).css("display",a).unbind("click").click(function(m){c.turnOff();
bad241dc701f add example input blast xml and output html page
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10 m.preventDefault()});jQuery(this._gol.optionsActions).css("display",e);jQuery(this._gol.optionsActions).children(":nth-child(2)").addClass("ui-ncbiautocomplete-link-pref-right")}else this._gol.activeElement=this.element;e=this.element;var d=jQuery(this._gol.optionsBox),f=false;if(e.parent().hasClass("jig-ncbiclearbutton-wrap")){e=e.parent();f=true;d.addClass("ui-ncbiautocomplete-holder-clearfix")}else d.removeClass("ui-ncbiautocomplete-holder-clearfix");b=e.outerWidth();a=e.outerHeight();e=e.offset();
bad241dc701f add example input blast xml and output html page
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11 var i,k,h;if(jQuery.browser.msie)h=k=i=0;else{i=parseInt(d.css("borderLeftWidth"),10);k=parseInt(d.css("borderRightWidth"),10);h=f?0:-1}d.css("top",e.top+a+(f?-1:-2)+"px").css("left",e.left+"px").width(b-i-k+h+"px");f=parseInt(this.options.zIndex,10);d.css("zIndex",f);d=jQuery(this._gol.optionsList);d[0].onscroll=function(){};d.scrollTop(0);d[0].onscroll=function(){c.sgData.hasScrolled=true};if(this._gol.isIE6){d=jQuery(this._gol.optionsBox.iframe);d.css("top",e.top+a+"px").css("left",e.left+"px").width(b-
bad241dc701f add example input blast xml and output html page
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12 i-k+h+"px");d.css("zIndex",f-1)}},_isActive:false,_focused:function(){this._gol.activeElement!==this.element&&this._hideOptions();this._setActivedescendant();this._positionOptionsBox();if(this.options.isEnabled){this._isActive=true;this._hasBeenEscaped=false}this.options.minLength===0&&this.options.localData&&this._keyUp({})},_lastEnteredTerm:null,_isCached:false,_hasBeenEscaped:false,_lastKeyPressDwnUpScroll:new Date,_lastFoundMatch:null,_findMatchInCache:function(a){this._lastFoundMatch=null;if(typeof this._localCache[this.options.dictionary]===
bad241dc701f add example input blast xml and output html page
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13 "undefined")return false;var b="l"+(this.options.maxListLimit||"n");if(typeof this._localCache[this.options.dictionary][b]==="undefined")return false;for(var c=0;a.length>1||c<10;){a=a.substr(0,a.length-1);var e=this._localCache[this.options.dictionary][b][a];if(e)if(e.isCompleteList){this._lastFoundMatch=a;return true}else break;c++}return false},_cloneMatchObject:function(a){var b={};b.matchedText=a.matchedText.toString();b.matches=a.matches?a.matches.slice():[];b.isCompleteList=a.isCompleteList===
bad241dc701f add example input blast xml and output html page
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14 true;return b},_timerTriggerEnterEvent:null,_clearTriggerEnterEvent:function(){this._timerTriggerEnterEvent=null},_triggerEnterEvent:function(){var a=this;if(!this._timerTriggerEnterEvent){this._timerTriggerEnterEvent=window.setTimeout(function(){a._clearTriggerEnterEvent()},50);this.element.trigger("ncbiautocompleteenter",this.sgData);this.element.trigger("ncbiautocompletechange",this.sgData);this._sgSend()}},_triggerTabEvent:function(){this.element.trigger("ncbiautocompletetab",this.sgData);this.element.trigger("ncbiautocompletechange",
bad241dc701f add example input blast xml and output html page
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15 this.sgData);this._sgSend()},_keyPress:function(a,b){var c=false,e=this;if(a.keyCode===this._keys.enter||a.keyCode===this._keys.tab){var d=a.keyCode===this._keys.enter,f=false;if(this._isActive&&this.isOptionsBoxOpen())if(this._currIndex===this.options.maxListLimit&&jQuery("li:eq("+this._currIndex+")",this._gol.optionsList).hasClass("ui-ncbiautocomplete-show-more")){this._hideOptions(true);this._gotoShowAll()}else if(this.sgData.optionSelected===jQuery(this.element).val()){f=d;if(!this._timerTriggerEnterEvent){this.sgData.selectionAction=
bad241dc701f add example input blast xml and output html page
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16 d?"enter":"tab";this.element.attr("valueId",this.element.attr("_optValue")||null);if(d)this._triggerEnterEvent();else{this._sentTab||this._triggerTabEvent();this._sentTab=true;window.setTimeout(function(){e._sentTab=false},10)}}this._hideOptions(true);if(d){a.stopPropagation();a.preventDefault();return false}}else a.keyCode===this._keys.tab&&this._hideOptions(true);else if(a.keyCode===this._keys.tab)if(!this._tabCalled){this._hideOptions(true);this._tabCalled=true;window.setTimeout(function(){e._tabCalled=
bad241dc701f add example input blast xml and output html page
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17 false},10)}if(d&&!f){this._hideOptions(true);this._triggerEnterEvent()}}else if(jQuery(this.element).val().length===0&&!this.options.localData)this._hideOptions(true);else if(a.keyCode===this._keys.up){c=true;this._scrollUpDownRateLimiter(-1)}else if(a.keyCode===this._keys.down&&!a.shiftKey){if(jQuery(this.element).val().length>=this.options.minLength&&!this.isOptionsBoxOpen()){this._reopenOptions=true;c=false;return}this._reopenOptions=false;c=true;this._scrollUpDownRateLimiter(1)}if(!this._lastKeyAction||
bad241dc701f add example input blast xml and output html page
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18 b===this._lastKeyAction){this._lastKeyAction=b;this._prevWasArrow=this._usedArrow;this._usedArrow=c}},_scrollUpDownRateLimiter:function(a){if(!(new Date-this._lastKeyPressDwnUpScroll<90)){this._moveSelection(a);this._lastKeyPressDwnUpScroll=new Date}},_checkArrowSelection:function(a){if(this._prevWasArrow&&a.keyCode!==this._keys.down&&a.keyCode!==this._keys.up&&a.keyCode!==this._keys.tab&&a.keyCode!==this._keys.enter&&this._isActive&&this.isOptionsBoxOpen()){this.sgData.selectionAction="arrows";typeof ncbi!==
bad241dc701f add example input blast xml and output html page
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19 "undefined"&&ncbi.sg&&ncbi.sg.ping&&ncbi.sg.ping(this.sgData,false);this._usedArrow=this._prevWasArrow=false}},_keyUp:function(a){if(!(!this.options.isEnabled||this._hasBeenEscaped)){this._checkArrowSelection(a);var b=jQuery(this.element).val().toLowerCase().replace(/^\s+/,"").replace(/\s+$/," "),c="l"+(this.options.maxListLimit||"n");if(!((a.keyCode===this._keys.up||a.keyCode===this._keys.down||a.keyCode===this._keys.enter)&&!this._reopenOptions))if(a.keyCode===this._keys.tab&&this._isOptionsBoxFocused){this._isActive=
bad241dc701f add example input blast xml and output html page
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20 this._isOptionsBoxFocused=false;a.type!=="keyup"&&this._hideOptions(true)}else if(a.keyCode===this._keys.escape){this._isActive=this._isOptionsBoxFocused=false;this._hasBeenEscaped=true;this._hideOptions(true)}else if(!(this._lastEnteredTerm===b||a.keyCode===this._keys.shift))if(this._localCache[this.options.dictionary]&&this._localCache[this.options.dictionary][c]&&this._localCache[this.options.dictionary][c][b]){this._isActive=true;this._resetValueId(b);this._lastEnteredTerm=b;this._displayOptions(this._localCache[this.options.dictionary][c][b])}else if(this._isCached&&
bad241dc701f add example input blast xml and output html page
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21 this._findMatchInCache(b)){this._isActive=true;this._localCache[this.options.dictionary][c][b]=this._cloneMatchObject(this._localCache[this.options.dictionary][c][this._lastFoundMatch]);this._resetValueId(b);this._lastEnteredTerm=b;this._filteredCache(b)}else if(b.length>=this.options.minLength&&this.options.localData){if(!this._localCache||!this._localCache[this.options.dictionary]||!this._localCache[this.options.dictionary][c]||!this._localCache[this.options.dictionary][c]["*_*_local_*_*"])this._putInCache({matchedText:"*_*_local_*_*",
bad241dc701f add example input blast xml and output html page
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22 matches:this.options.localData.slice(),isCompleteList:true},"*_*_local_*_*");this._isActive=true;this._localCache[this.options.dictionary][c][b]=this._cloneMatchObject(this._localCache[this.options.dictionary][c]["*_*_local_*_*"]);this._resetValueId(b);this._lastEnteredTerm=b;this._filteredCache(b)}else if(b.length>=this.options.minLength&&this.options.webserviceUrl){if(!this._isActive){this._isActive=true;this._focused()}if(this._lastEnteredTerm!==b){this._resetValueId(b);this._lastEnteredTerm=b;
bad241dc701f add example input blast xml and output html page
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23 this._fecthOptions(b)}}else{this._resetValueId(b);this._hideOptions()}}},_resetValueId:function(a){this._lastEnteredTerm&&this._lastEnteredTerm.toLowerCase()===a||this._lastTextInTextbox&&this._lastTextInTextbox.toLowerCase()===a||this.element.attr("valueId",null)},_changeFired:function(){this._lastEnteredTerm!==this.element.val()&&this._resetValueId()},_webSerivcePath:null,_setWebServicePath:function(){var a=this.options.webserviceUrl;if(a){var b="";if(this.options.isCrossDomain)this._webSerivcePath=
bad241dc701f add example input blast xml and output html page
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24 "http://www.ncbi.nlm.nih.gov/portal/utils/autocomp.fcgi";else{if(!this.options.isUrlRelative){b=window.location.protocol+"//"+window.location.host;if(a.charAt(0)!=="/")a="/"+a}this._webSerivcePath=b+a}}},_fecthOptions:function(a){this._activeRequest!==null&&this._activeRequest.abort();var b=this,c=this.options.responseFormat==="old"?"text":"json",e={dict:this.options.dictionary};e[this.options.queryParameter]=a;if(this.options.isCrossDomain){this._addGlobalListener("NSuggest_CreateData");jQuery.ajax({url:this._webSerivcePath,
bad241dc701f add example input blast xml and output html page
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25 dataType:"script",data:e,cache:true})}else this._activeRequest=jQuery.get(this._webSerivcePath,e,function(d,f){b._handleResponse(d,f)},c)},_validSeverCall:function(a){var b=false,c;if(this.options.isCrossDomain){typeof console!=="undefined"&&console.warn&&console.warn("Can not do this test with cross domain calls");return false}else if(this.options.dictionary.length>0){var e=this.options.responseFormat==="old"?"text":"json";c={dict:this.options.dictionary};c[this.options.queryParameter]=a;c=jQuery.ajax({url:this._webSerivcePath,
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26 data:c,async:false,dataTypeString:e});if(c.status===200){c=c.responseText;b="NSuggest_CreateData_test"+(new Date).getTime();this._addGlobalListener(b,true);c=eval(c.replace("NSuggest_CreateData",b));window[b]=null;b=this._isValidCheck(a,c.matches)}}return b},_handleResponse:function(a,b){this._activeRequest=null;if(b==="success")if(this.options.responseProcessor)this._customFormat(a);else this.options.responseFormat==="old"?this._oldFormat(a):this._displayOptions(a);else this.turnOff()},_addGlobalListener:function(a,
bad241dc701f add example input blast xml and output html page
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27 b){var c=this;window[a]=function(e,d,f){e={matchedText:e,matches:d,isCompleteList:f===1};if(b)return e;else c._displayOptions(e)}},_oldFormat:function(a){if(a.indexOf("_dictionary_error")!==-1)this.turnOff(true);else if(jQuery.trim(a).indexOf("NSuggest_CreateData")!==-1){this._addGlobalListener("NSuggest_CreateData_new");eval(a.replace("NSuggest_CreateData","NSuggest_CreateData_new"))}else this._hideOptions()},_localCache:{},_putInCache:function(a,b){if(!this.options.disableCache){var c="l"+(this.options.maxListLimit||
bad241dc701f add example input blast xml and output html page
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28 "n");this._localCache[this.options.dictionary]||(this._localCache[this.options.dictionary]={});this._localCache[this.options.dictionary][c]||(this._localCache[this.options.dictionary][c]={});this._localCache[this.options.dictionary][c][b||this._lastEnteredTerm]||(this._localCache[this.options.dictionary][c][b||this._lastEnteredTerm]=a)}},_setActivedescendant:function(){var a=this.element.attr("id");if(!a){a=jQuery.ui.jig._generateId("ncbiautocomplete");this.element.attr("id",a)}jQuery(this._gol.optionsBox).find("ul:eq(0)").attr("aria-activedescendant",
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29 a)},_displayOptions:function(a){this._setActivedescendant();this._putInCache(a);var b=a.matchedText,c=a.matches||[];if(b!==this._lastEnteredTerm){a.isCompleteList=true;this._filteredCache(this._lastEnteredTerm,a)}else{this.sgData.userTyped=this._lastEnteredTerm;this.sgData.optionsCount=c;this._positionOptionsBox();var e=this;if(b==="_dictionary_error")this.turnOff(true);else{this._isCached=a.isCompleteList;b=a.previousFormat;if(!b){var d=this.options.maxListLimit;b=0;var f;if(d===null||c.length<=
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30 d)f=c.length;else{f=d;b=c.length-f}d=(this._lastEnteredTerm||"").replace(/([\^\$\\\?\(\)\[\]\*\+\{\}\|\/\.\,])/g,"\\$1");var i=new RegExp("("+d+")","i");d=new Array(c.length);var k=this.options.hasRelatedMatches;for(f=f-1;f>=0;f--){var h=c[f],m="",q=h.indexOf("@");if(q!==-1){m='valueId="'+h.substr(q+1)+'"';h=h.substr(0,q);k=true}d[f]="<li role='menuitem' "+m+">"+h.replace(i,"<span>$1</span>").replace(/\\"/g,'"')+"</li>"}b>0&&d.push("<li class='ui-ncbiautocomplete-show-more' role='menuitem' moreOption='true'>See all results</li>");
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31 b=d.join("");if(d.length===0||!k&&b.indexOf("<span>")===-1){this._hideOptions();return}a.previousFormat=b}c=jQuery(this._gol.optionsBox);a=jQuery(this._gol.optionsList);a.scrollTop(0);a.html(b);if(c.css("display")!=="block"&&this._isActive){c.css("display","block");if(this._gol.isIE6){b=jQuery(this._gol.optionsBox.iframe).css("display","block");b.height(b.height()+jQuery(this._gol.optionsActions).height())}}else this._isActive||this._hideOptions();b=jQuery(".ui-ncbiautocomplete-options li");d=(b.eq(0).outerHeight()||
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32 20)*b.length;b.closest(".ui-ncbiautocomplete-holder").height(d).css("min-height",d+"px");b.closest(".ui-ncbiautocomplete-options").height(d).css("overflow-y","hidden");b=c.width();jQuery("li",a).hover(function(){e._addHightlightMouse(this)},function(){e._removeHighlight("mouse")}).click(function(){e._optionClicked(this);return false});jQuery(a).mouseleave(function(){e._removeHighlight("mouse");e._resetCurrentIndex()});this._resetCurrentIndex();c=jQuery("li",c);b=jQuery(this._gol.optionsBox).width();
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33 var l=jQuery.browser.msie&&!this._gol.isIE6||jQuery.browser.safari||jQuery.browser.opera;d=c.eq(0);parseFloat(d.css("padding-left"));k=d.html();d.html("<span>MMMMMMMMM.</span>");i=d.children("span:first").width()/10;d.html("<span>&hellip;<span>");d.children("span:first").width();d.html(k);var r=a.width(),y=Math.floor(b/i);c.each(function(){var j=jQuery(this);j.css("white-space","nowrap");var n=j.html();j.attr("fullText",n).attr("acValue",n.replace(/<\/?span>/gi,""));if(j.width()/j.attr("acValue").length<
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34 9)if(l)j.attr("partialText",j.html()).attr("isIEExpand",true).css("width",r-28+"px");else{var t=n.toLowerCase().indexOf("<span>"),u=n.toLowerCase().indexOf("</span>"),z=function(g){var o=false;if(g>=t&&g<t+6){g=g-t;g=t+g;o=true}if(g>=u&&g<u+7){g=g-u;g=u+g}return{cutLoc:g,addSpan:o}},x=function(g,o,v,A,s){n.indexOf("Journal of magnetic");g=z(g);var p=n.substr(0,g.cutLoc)+(g.addCloseSpan?"</span>":"")+"&hellip;";j.html(p);if(p===A){if(j.height()!==w&&typeof s!=="undefined")p=s;j.attr("partialText",
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35 p).css("white-space","nowrap")}else if(j.height()===w){o=p.toString()+"";s=Math.floor((g.cutLoc+v)/2);x(s,g.cutLoc,v,p,o)}else{v=Math.floor((parseInt(g.cutLoc,10)+parseInt(o,10))/2);x(v,o,g.cutLoc,p,s)}};j.css("white-space","normal").css("width",r-22+"px");var B=j.height();j.html(".");var w=j.height();j.html(n);B>w&&x(y,0,n.length)}});a.scrollTop(0);this._removeHighlight("mouse");this._hideOptionsIfOffPage()}}},_filteredCache:function(a,b){var c=true,e="l"+(this.options.maxListLimit||"n");if(a===
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36 null)c=false;else{if(b){b=b;if(typeof this._localCache[this.options.dictionary]==="undefined")this._localCache[this.options.dictionary]={};else if(typeof this._localCache[this.options.dictionary][e]==="undefined")this._localCache[this.options.dictionary][e]={}}else b=this._localCache[this.options.dictionary][e][a];b.matchedText=a;var d=this.options.minLength===0&&a.length===0;if(!this.options.hasRelatedMatches){c=a.replace(/([\^\$\\\?\(\)\[\]\*\+\{\}\|\/\.\,])/g,"\\$1");c=new RegExp(c,"ig");for(var f=
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37 b.matches.join("!!!~~~!!!").split("!!!~~~!!!"),i=f.length-1;i>=0;i--)!d&&f[i].match(c)===null&&f.splice(i,1);b.matches=f;this._localCache[this.options.dictionary][e][a]=b;c=f.length>0}}c?this._displayOptions(this._localCache[this.options.dictionary][e][a]):this._hideOptions()},_removeHighlight:function(a){if(!(a==="mouse"&&new Date-this._lastKeyPressDwnUpScroll<100)){var b=this;jQuery("li",this._gol.optionsList).removeClass("ui-ncbiautocomplete-options-high").each(function(){b._collapseOption(this)})}},
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38 _addHightlightMouse:function(a){if(new Date-this._lastKeyPressDwnUpScroll>100){this._resetCurrentIndex();this._currIndex=jQuery(a).prevAll("li").length;this._addHightlight(a)}},_addHightlight:function(a){this._removeHighlight();jQuery(a).addClass("ui-ncbiautocomplete-options-high");var b=this;this._expandTimer&&window.clearTimeout(this._expandTimer);this._expandTimer=window.setTimeout(function(){b._expandOption(a)},this.options.expandPauseTime)},_expandOption:function(a){if(jQuery(a).hasClass("ui-ncbiautocomplete-options-high")){a=
bad241dc701f add example input blast xml and output html page
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39 jQuery(a).attr("isExpanded",true);var b=a.attr("fullText");if(a.html()!==b||a.attr("isIEExpand")){a.html(b).css("text-overflow","").css("white-space","normal").css("-o-text-overflow","");this._scrollIntoView()}}},_collapseOption:function(a){a=jQuery(a);a.attr("isIEExpand")?a.css("text-overflow","ellipsis").css("white-space","nowrap").css("-o-text-overflow","ellipsis"):a.css("white-space","nowrap").html(a.attr("partialText"))},_optionClicked:function(a){a=jQuery(a);if(a.hasClass("ui-ncbiautocomplete-show-more"))this._gotoShowAll();
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40 else{var b=this._cleanUpSelectionText(a);a=a.attr("valueId")||null;this.sgData.optionSelected=b;this.sgData.optionIndex=this._currIndex;this.sgData.valueId=a;this.sgData.selectionAction="click";this._sgSend();b=jQuery(this.element).val(b);b.attr("valueid",a);b.trigger("ncbiautocompleteoptionclick",this.sgData);b.trigger("ncbiautocompletechange",this.sgData)}this._isOptionsBoxFocused=false;this._hideOptions()},isOptionsBoxOpen:function(){return jQuery(this._gol.optionsBox).css("display")==="block"},
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41 _hideOptions:function(a){this._gol.activeElement=null;if(!(this._isOptionsBoxFocused&&!a)){var b=jQuery(this._gol.optionsBox);a&&jQuery(this._gol.optionsBox).css("display","none");b.attr("aria-activedescendant")===this.element.attr("id")&&b.attr("aria-activedescendant","");this._gol.isIE6&&jQuery(this._gol.optionsBox.iframe).css("display","none");this._resetCurrentIndex();this._isActive=false;this._lastEnteredTerm=null;b=jQuery(this._gol.optionsBox);var c=jQuery(this._gol.optionsList);b.css("display",
bad241dc701f add example input blast xml and output html page
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42 "none");c.html("");this._lastTextInTextbox=b=this.element.val();if(this.options.requireValidation&&b.length>0&&this.options.isEnabled&&(!this.element.is(":focus")||a))this._trigger((b.length<this.options.minLength?false:this.isInDictionary(b))?"validselection":"invalidselection")}},_setTextCursorToEnd:function(a){var b=this.element;jQuery(b).val(a);if(b.createTextRange){a=b.createTextRange();a.moveStart("character",b.value.length);a.collapse();a.select()}},_resetCurrentIndex:function(){this._currIndex=
bad241dc701f add example input blast xml and output html page
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43 -1},_cleanUpSelectionText:function(a){return jQuery.trim(a.attr("acValue")).replace(/&amp;/gi,"&").replace(/\\"/g,'"')},_currIndex:-1,_moveSelection:function(a){if(this._isActive){this.sgData.usedArrows=true;var b=jQuery("li",this._gol.optionsList).length;this._currIndex+=a;this._removeHighlight();a=this._lastEnteredTerm;var c="";if(!(a===null||a.length<this.options.minLength)){if(this._currIndex<0||this._currIndex>=b)this._currIndex=this._currIndex===-2?b-1:-1;if(this._currIndex!==-1){b=jQuery("li:eq("+
bad241dc701f add example input blast xml and output html page
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44 this._currIndex+")",this._gol.optionsList);this._addHightlight(b);if(this._currIndex===this.options.maxListLimit){this.sgData.optionSelected="";this.sgData.valueId=""}else{a=this._cleanUpSelectionText(b);c=b.attr("valueId")||null;this.sgData.optionSelected=a;this.sgData.valueId=c}}else{this.sgData.optionSelected="";this.sgData.valueId=""}this.element.attr("_optValue",c);this.element.attr("valueId",c);this._setTextCursorToEnd(a);this._scrollIntoView();this.sgData.optionIndex=this._currIndex}}},_scrollIntoView:function(){var a=
bad241dc701f add example input blast xml and output html page
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45 jQuery("li:eq("+this._currIndex+")",this._gol.optionsList);if(a.length!==0){var b=jQuery(this._gol.optionsList),c=b.height(),e=b.scrollTop(),d=a[0].offsetTop;a=a.height();if(d-c+a>e){e=jQuery("li:eq("+(this._currIndex+1)+")",this._gol.optionsList);b.scrollTop((e.length===1?e[0].offsetTop:d+a+10)-c)}else d<e&&b.scrollTop(d)}},enableAutocomnplete:function(){this.options.isEnabled=true},disableAutocomnplete:function(){this.disableAutocomplete()},disableAutocomplete:function(){this._isOptionsBoxFocused=
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46 this.options.isEnabled=false;this._hideOptions()},turnOff:function(a){this.disableAutocomplete();var b=this.element.data("ncbiautocompleteOriginalTitle");b&&this.element.attr("title",b);if(!a){typeof ncbi!=="undefined"&&ncbi.sg&&ncbi.sg.ping&&ncbi.sg.ping(this.element[0],"autocompleteoffclick","dictionary="+this.options.dictionary);this.element.trigger("ncbiautocompletedisableclicked");a=this.options.disableUrl;if(a!==null&&a.length>0){b=jQuery.ui.jig._getFncFromStr(a);typeof b==="function"?b():jQuery.get(a)}}},
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47 _prefLinkClick:function(){typeof ncbi!=="undefined"&&ncbi.sg&&ncbi.sg.ping&&ncbi.sg.ping(this.element[0],"autocompleteprefclick","dictionary="+this.options.dictionary)},_checkClickEvent:function(a){if(this._isActive)if(jQuery(this.element)[0]!=a.target){this._isActive=this._isOptionsBoxFocused=false;this._hideOptions()}},_sgSend:function(){typeof ncbi!=="undefined"&&typeof ncbi.sg!=="undefined"&&typeof ncbi.sg.ping!=="undefined"&&ncbi.sg.ping(this.sgData,false)},getSgData:function(){return this.sgData},
bad241dc701f add example input blast xml and output html page
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48 _gotoShowAll:function(){var a=jQuery(this.element),b=a.val();a.trigger("ncbiautocompleteshowall",{value:b,dictionary:this.options.dictionary})},_hideOptionsIfOffPage:function(){if(this.options.maxListLimit){var a=this,b=jQuery(".ui-ncbiautocomplete-options li"),c=b.eq(0).outerHeight()||20,e=jQuery(this._gol.optionsBox),d=jQuery(window).height(),f=e.position().top,i=f+e.outerHeight()-(document.body.scrollTop||document.documentElement.scrollTop||window.pageYOffset||0);if(b.last().hasClass("ui-ncbiautocomplete-show-more")){var k=
bad241dc701f add example input blast xml and output html page
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diff changeset
49 f+"-"+d+"-"+i;if(!this.choppedDetails)this.choppedDetails={};var h=this.choppedDetails[k],m=0,q=function(){i=f+e.outerHeight()-(document.body.scrollTop||document.documentElement.scrollTop||window.pageYOffset||0);if(i>d){b=jQuery(".ui-ncbiautocomplete-options li");var r=b.length-2;if(r>=0){b.eq(r).remove();sz=c*(b.length-1);b.closest(".ui-ncbiautocomplete-holder").height(sz).css("min-height",sz+"px");b.closest(".ui-ncbiautocomplete-options").height(sz).css("overflow-y","hidden");m++;q()}}else a.choppedDetails[k].count=
bad241dc701f add example input blast xml and output html page
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diff changeset
50 m};if(h){var l=h.count;if(l>0){h=2*h.length-l-b.length-2;b.filter(":lt("+(b.length-1)+")").filter(":gt("+h+")").remove();b=jQuery(".ui-ncbiautocomplete-options li");sz=c*b.length;b.closest(".ui-ncbiautocomplete-holder").height(sz).css("min-height",sz+"px");b.closest(".ui-ncbiautocomplete-options").height(sz).css("overflow-y","hidden")}m=l}else this.choppedDetails[k]={count:0,length:b.length};q()}else{l=Math.floor((d-f)/c)*c;h=b.length*c;if(l>h)l=h;b.closest(".ui-ncbiautocomplete-holder").height(l).css("min-height",
bad241dc701f add example input blast xml and output html page
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diff changeset
51 l+"px");b.closest(".ui-ncbiautocomplete-options").height(l).css("overflow-y","auto")}}},isValid:function(){return this.isInDictionary(this.element.val())},isInDictionary:function(a){var b=false;if(a&&a.length>=this.options.minLength&&this.options.dictionary&&this.options.dictionary.length>0&&this.options.isEnabled){var c=false,e="l"+(this.options.maxListLimit||"n"),d=a.toLowerCase();if(this._localCache[this.options.dictionary]&&this._localCache[this.options.dictionary][e]){e=this._localCache[this.options.dictionary][e];
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52 c=true;if(e[d])b=this._isValidCheck(d,e[d].matches);else for(var f in e)if(b=this._isValidCheck(d,e[f].matches))break}if(!b&&!c)b=this._validSeverCall(a)}return b},_isValidCheck:function(a,b){var c=false;if(b){c=jQuery.inArray(a.toLowerCase(),b)>-1;if(!c){var e=new RegExp("(^|@)("+a.toLowerCase()+")(@|$)","i");jQuery.each(b,function(d,f){if(f.match(e)){c=true;return false}})}}return c},_customFormat:function(a){if(typeof this.options.responseProcessor==="string")this.options.responseProcessor=jQuery.ui.jig._getFncFromStr(this.options.responseProcessor);
bad241dc701f add example input blast xml and output html page
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diff changeset
53 this._displayOptions({matchedText:this._lastEnteredTerm,matches:this.options.responseProcessor.call(this,a),isCompleteList:0})}});jQuery.ui.ncbiautocomplete._globalOptionsList=null;