Mercurial > repos > jankanis > blast2html

annotate visualise.html.jinja @ 8:beb83da5a6b7

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div-ified graphics
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 08 May 2014 17:33:41 +0200
parents 9e7927673089
children bbdc8fb0de2b
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1 <!DOCTYPE html>
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2 <html>
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3 <head>
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4 <meta charset="UTF-8">
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5
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6 <title>Blast output</title>
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7
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8 <style>
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9 body {
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10 color: #33333;
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11 font-family: Verdana,Arial,Sans-Serif;
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12 }
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13
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14 #content {
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15 margin: 0 2em;
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16 padding: 0.5em;
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17 border: 1px solid #888888;
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18 background-color: #d3dff5;
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19 }
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20
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21 h1, h2, h3, h4, h5, h6 {
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22 color: #2A6979;
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23 font-family: arial,verdana,sans-serif;
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24 letter-spacing: -1px;
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25 margin: 1.2em 0 0.3em;
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26 }
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28 h1 {
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29 border-bottom: 1px solid #CCCCCC;
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30 font-size: 150%;
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31 padding-bottom: 0.1em;
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32 }
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33
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34 h2 {
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35 font-size: 120%;
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36 font-weight: bold;
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37 }
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38
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39 h4.blackHeader {
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40 color: black;
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41 letter-spacing: 0;
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42 font-style: bold;
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43 }
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44
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45 .headerdata {
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46 font-size: 90%;
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47 }
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48 .headerdata .param {
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49 font-weight: bold;
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50 text-align: right;
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51 padding: 0 1em;
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52 }
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53
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54 .grey {
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55 background-color: #eeeeee;
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56 border: 1px solid #cccccc;
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57 padding: 1em;
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58 }
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59
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60 .white {
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61 background-color: white;
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62 border: 1px solid #cccccc;
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63 padding: 1em;
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64 }
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65
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66 .graphicrow {
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67 clear: left;
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68 width: 100%;
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69 }
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70
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71 .graphicitem {
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72 float: left;
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73 }
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74
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75 .graphic {
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76 background-color: white;
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77 border: 2px solid black;
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78 padding: .5em;
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79 align: center;
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80 margin: auto;
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81 }
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82
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83 #graphics .grey {
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84 text-align: center;
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85 }
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86
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87 .centered, #defline, div.legend, div.tablewrapper {
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88 align: center;
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89 margin-left: auto;
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90 margin-right: auto;
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91 }
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92
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93 #defline {
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94 background-color: white;
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95 border: 1px solid black;
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96 margin: .5em auto;
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97 padding-left: .2em;
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98 padding-right: .2em;
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99 max-width: 50em;
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100 text-align: left;
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101 height: 4em;
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102 overflow-y: hidden;
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103 }
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104
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105 div.legend {
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106 max-width: 40em;
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107 }
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108 div.legend div {
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109 width: 100%;
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110 color: white;
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111 font-weight: bold;
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112 border-spacing: 0;
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113 }
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114 div.legend div .graphicitem {
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115 width: 20%;
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116 padding: 0;
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117 margin: 0;
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118 border: none;
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119 }
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120
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121 div.tablewrapper {
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122 width: 50%;
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123 min-width: 60em;
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124 }
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125
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126 /* For small widths we give the graphic 100% */
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127 @media (max-width: 70em) {
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128 div.tablewrapper {
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129 width: 100%;
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130 min-width: 0px;
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131 }
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132 }
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133
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134 .scale {
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135 width: 100%;
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136 margin: .5em 0;
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137 font-weight: bold;
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138 }
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139 .scale div {
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140 color: red;
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141 text-align: left;
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142 }
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143 .scale .graphicrow {
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144 margin: .5em 0 .5em 0;
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145 color: white;
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146 }
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147 .scale .graphicitem div {
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148 margin: 0 1px;
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149 padding: 0 2px;
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150 text-align: right;
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151 background-color: red;
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152 color: white;
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153 }
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154
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155 a.matchresult {
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156 display: block;
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157 margin: 0;
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158 padding: 0;
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159 }
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160 div.matchrow {
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161 margin-top: 4px;
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162 }
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163 div.matchrow, div.matchitem {
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164 height: 4px;
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165 }
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166
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167 table.descriptiontable {
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168 width: 100%;
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169 }
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170 table.descriptiontable td {
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171 overflow: hidden;
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172 white-space: nowrap;
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173 }
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174 table.descriptiontable td div {
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175 display: inline-block;
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176 overflow: hidden;
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177 max-height: 1.4em;
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178 white-space: nowrap;
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179 }
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180
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181 </style>
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182
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183
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184 </head>
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185
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186 <body>
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187 <div id=content>
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188 <h1>Nucleotide Sequence ({{length}} letters)</h1>
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189
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190 <div id=header>
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191
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192 <table class=headerdata>
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193 {% for param, value in params %}
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194 <tr><td class=param>{{param}}</td><td>{{value}}</td></tr>
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195 {% endfor %}
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196 </table>
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197
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198 </div>
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199
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200 <div id=graphics>
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201 <h2>Graphic Summary</h2>
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202
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203 <div class=grey>
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204 <h3 class=centered>Distribution of {{hits|length}} Blast Hits on the Query Sequence</h3>
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205
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206 <div id=defline>Mouse-over to show defline and scores, click to show alignments</div>
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207
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208 <div class=graphic>
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209 <h4 class=blackHeader>Color key for alignment scores</h4>
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210 <div class=legend><div class=graphicrow>
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211 <div class=graphicitem style="background-color: {{colors[0]}}">&lt;40</div>
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212 <div class=graphicitem style="background-color: {{colors[1]}}">40-50</div>
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213 <div class=graphicitem style="background-color: {{colors[2]}}">50-80</div>
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214 <div class=graphicitem style="background-color: {{colors[3]}}">80-200</div>
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215 <div class=graphicitem style="background-color: {{colors[4]}}">200&le;</div>
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216 </div></div>
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217 <div style="clear: left"></div>
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218
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219 <div class=tablewrapper>
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220
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221 <div class=scale>
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222 <div>query:</div>
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223 <div class=graphicrow>
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224 {% for s in queryscale %}
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225 <div class=graphicitem
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226 style="width: {{s.width|safe}}%">
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227 <div style="{{'margin-left: 0px' if loop.first else 'margin-right: 0px' if loop.last}}">{{s.label|safe}}</div>
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228 </div>
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229 {% endfor %}
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230 </div>
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231 <div style="clear: left"></div>
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232 </div>
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233
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234 {% for line in match_colors %}
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235 <a class=matchresult
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236 href="{{line.link}}"
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237 onmouseover='document.getElementById("defline").innerHTML="{{line.defline}}"'
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238 onmouseout='document.getElementById("defline").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
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239 title="{{line.defline}}">
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240 <div class="matchrow graphicrow">
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241 {% for match in line.colors %}
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242 <div class="matchitem graphicitem"
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243 style="background-color: {{match[1]}}; width: {{match[0]}}%"></div>
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244 {% endfor %}
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245 </div>
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246 </a>
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247
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248 {% endfor %}
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249 </div>
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250 </div>
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251 </div>
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252 </div>
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253
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254 <div id=descriptions>
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255 <h2>Descriptions</h2>
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256
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257 <div class=grey><div class=white>
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258 <h4 class=blackHeader>Sequences producing significant alignments:</h4>
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259 <table class=descriptiontable>
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260 <tr>
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261 <th>Description</th>
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262 <th>Max score</th>
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263 <th>Total score</th>
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264 <th>Query cover</th>
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265 <th>E value</th>
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266 <th>Ident</th>
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267 <th>Accession</th>
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268 </tr>
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269 {% for hit in hit_info %}
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270 <tr>
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271 <td><div>{{hit.description}}</div></td>
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272 <td>{{hit.maxscore}}</td>
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273 <td>{{hit.totalscore}}</td>
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274 <td>{{hit.cover}}</td>
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275 <td>{{hit.e_value}}</td>
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276 <td>{{hit.ident}}</td>
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277 <td>{{hit.accession}}</td>
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278 </tr>
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279 {% endfor %}
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280 </table>
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281
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282 </div></div>
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283
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284 </div>
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285
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286 </div>
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287 </body>
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288 </html>
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289