Mercurial > repos > jankanis > blast2html

annotate test-data/blast xml example4.xml @ 78:c0804e6443c6 py2.6

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author Jan Kanis <jan.code@jankanis.nl>
date Thu, 19 Jun 2014 16:29:33 +0200
parents 0ef071bba164
children
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25
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1 <?xml version="1.0"?>
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2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
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3 <BlastOutput>
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4 <BlastOutput_program>blastn</BlastOutput_program>
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5 <BlastOutput_version>BLASTN 2.2.29+</BlastOutput_version>
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6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
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7 <BlastOutput_db>/opt/galaxy/blastdbs/EUginius_plasmid_insert</BlastOutput_db>
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8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
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9 <BlastOutput_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</BlastOutput_query-def>
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10 <BlastOutput_query-len>20</BlastOutput_query-len>
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11 <BlastOutput_param>
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12 <Parameters>
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13 <Parameters_expect>0.001</Parameters_expect>
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14 <Parameters_sc-match>1</Parameters_sc-match>
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15 <Parameters_sc-mismatch>-3</Parameters_sc-mismatch>
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16 <Parameters_gap-open>5</Parameters_gap-open>
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17 <Parameters_gap-extend>2</Parameters_gap-extend>
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18 <Parameters_filter>L;m;</Parameters_filter>
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19 </Parameters>
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20 </BlastOutput_param>
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21 <BlastOutput_iterations>
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22 <Iteration>
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23 <Iteration_iter-num>1</Iteration_iter-num>
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24 <Iteration_query-ID>Query_1</Iteration_query-ID>
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25 <Iteration_query-def>Forward_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def>
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26 <Iteration_query-len>20</Iteration_query-len>
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27 <Iteration_hits>
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28 <Hit>
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29 <Hit_num>1</Hit_num>
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30 <Hit_id>gnl|BL_ORD_ID|5</Hit_id>
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31 <Hit_def>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</Hit_def>
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32 <Hit_accession>5</Hit_accession>
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33 <Hit_len>2457</Hit_len>
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34 <Hit_hsps>
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35 <Hsp>
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36 <Hsp_num>1</Hsp_num>
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37 <Hsp_bit-score>40.14</Hsp_bit-score>
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38 <Hsp_score>20</Hsp_score>
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39 <Hsp_evalue>1.51296e-07</Hsp_evalue>
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40 <Hsp_query-from>1</Hsp_query-from>
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41 <Hsp_query-to>20</Hsp_query-to>
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42 <Hsp_hit-from>2119</Hsp_hit-from>
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43 <Hsp_hit-to>2138</Hsp_hit-to>
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44 <Hsp_query-frame>1</Hsp_query-frame>
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45 <Hsp_hit-frame>1</Hsp_hit-frame>
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46 <Hsp_identity>20</Hsp_identity>
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47 <Hsp_positive>20</Hsp_positive>
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48 <Hsp_gaps>0</Hsp_gaps>
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49 <Hsp_align-len>20</Hsp_align-len>
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50 <Hsp_qseq>AGCGCGCAAACTAGGATAAA</Hsp_qseq>
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51 <Hsp_hseq>AGCGCGCAAACTAGGATAAA</Hsp_hseq>
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52 <Hsp_midline>||||||||||||||||||||</Hsp_midline>
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53 </Hsp>
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54 </Hit_hsps>
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55 </Hit>
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56 <Hit>
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57 <Hit_num>2</Hit_num>
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58 <Hit_id>gnl|BL_ORD_ID|2</Hit_id>
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59 <Hit_def>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</Hit_def>
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60 <Hit_accession>2</Hit_accession>
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61 <Hit_len>323</Hit_len>
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62 <Hit_hsps>
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63 <Hsp>
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64 <Hsp_num>1</Hsp_num>
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65 <Hsp_bit-score>40.14</Hsp_bit-score>
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66 <Hsp_score>20</Hsp_score>
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67 <Hsp_evalue>1.51296e-07</Hsp_evalue>
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68 <Hsp_query-from>1</Hsp_query-from>
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69 <Hsp_query-to>20</Hsp_query-to>
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70 <Hsp_hit-from>200</Hsp_hit-from>
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71 <Hsp_hit-to>219</Hsp_hit-to>
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72 <Hsp_query-frame>1</Hsp_query-frame>
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73 <Hsp_hit-frame>1</Hsp_hit-frame>
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74 <Hsp_identity>20</Hsp_identity>
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75 <Hsp_positive>20</Hsp_positive>
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76 <Hsp_gaps>0</Hsp_gaps>
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77 <Hsp_align-len>20</Hsp_align-len>
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78 <Hsp_qseq>AGCGCGCAAACTAGGATAAA</Hsp_qseq>
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79 <Hsp_hseq>AGCGCGCAAACTAGGATAAA</Hsp_hseq>
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80 <Hsp_midline>||||||||||||||||||||</Hsp_midline>
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81 </Hsp>
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82 </Hit_hsps>
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83 </Hit>
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84 </Iteration_hits>
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85 <Iteration_stat>
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86 <Statistics>
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87 <Statistics_db-num>8</Statistics_db-num>
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88 <Statistics_db-len>15339</Statistics_db-len>
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89 <Statistics_hsp-len>8</Statistics_hsp-len>
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90 <Statistics_eff-space>183300</Statistics_eff-space>
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91 <Statistics_kappa>0.710602795216363</Statistics_kappa>
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92 <Statistics_lambda>1.37406312246009</Statistics_lambda>
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93 <Statistics_entropy>1.30724660390929</Statistics_entropy>
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94 </Statistics>
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95 </Iteration_stat>
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96 </Iteration>
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97 <Iteration>
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98 <Iteration_iter-num>2</Iteration_iter-num>
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99 <Iteration_query-ID>Query_2</Iteration_query-ID>
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100 <Iteration_query-def>Reverse_Primer|NOST-Spec_(Genetic_ID)</Iteration_query-def>
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101 <Iteration_query-len>20</Iteration_query-len>
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102 <Iteration_hits>
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103 </Iteration_hits>
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104 <Iteration_stat>
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105 <Statistics>
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106 <Statistics_db-num>8</Statistics_db-num>
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107 <Statistics_db-len>15339</Statistics_db-len>
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108 <Statistics_hsp-len>8</Statistics_hsp-len>
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109 <Statistics_eff-space>183300</Statistics_eff-space>
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110 <Statistics_kappa>0.710602795216363</Statistics_kappa>
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111 <Statistics_lambda>1.37406312246009</Statistics_lambda>
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112 <Statistics_entropy>1.30724660390929</Statistics_entropy>
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113 </Statistics>
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114 </Iteration_stat>
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115 <Iteration_message>No hits found</Iteration_message>
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116 </Iteration>
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117 <Iteration>
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118 <Iteration_iter-num>3</Iteration_iter-num>
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119 <Iteration_query-ID>Query_3</Iteration_query-ID>
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120 <Iteration_query-def>Probe|NOST-Spec_(Genetic_ID)</Iteration_query-def>
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121 <Iteration_query-len>20</Iteration_query-len>
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122 <Iteration_hits>
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123 <Hit>
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124 <Hit_num>1</Hit_num>
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125 <Hit_id>gnl|BL_ORD_ID|5</Hit_id>
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126 <Hit_def>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</Hit_def>
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Jan Kanis <jan.code@jankanis.nl>
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127 <Hit_accession>5</Hit_accession>
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Jan Kanis <jan.code@jankanis.nl>
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128 <Hit_len>2457</Hit_len>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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129 <Hit_hsps>
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Jan Kanis <jan.code@jankanis.nl>
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130 <Hsp>
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Jan Kanis <jan.code@jankanis.nl>
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131 <Hsp_num>1</Hsp_num>
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132 <Hsp_bit-score>40.14</Hsp_bit-score>
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133 <Hsp_score>20</Hsp_score>
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Jan Kanis <jan.code@jankanis.nl>
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134 <Hsp_evalue>1.51296e-07</Hsp_evalue>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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135 <Hsp_query-from>1</Hsp_query-from>
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136 <Hsp_query-to>20</Hsp_query-to>
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Jan Kanis <jan.code@jankanis.nl>
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137 <Hsp_hit-from>2143</Hsp_hit-from>
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Jan Kanis <jan.code@jankanis.nl>
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138 <Hsp_hit-to>2162</Hsp_hit-to>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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139 <Hsp_query-frame>1</Hsp_query-frame>
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Jan Kanis <jan.code@jankanis.nl>
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140 <Hsp_hit-frame>1</Hsp_hit-frame>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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141 <Hsp_identity>20</Hsp_identity>
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Jan Kanis <jan.code@jankanis.nl>
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142 <Hsp_positive>20</Hsp_positive>
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Jan Kanis <jan.code@jankanis.nl>
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143 <Hsp_gaps>0</Hsp_gaps>
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Jan Kanis <jan.code@jankanis.nl>
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144 <Hsp_align-len>20</Hsp_align-len>
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145 <Hsp_qseq>CGCGCGCGGTGTCATCTATG</Hsp_qseq>
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Jan Kanis <jan.code@jankanis.nl>
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146 <Hsp_hseq>CGCGCGCGGTGTCATCTATG</Hsp_hseq>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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147 <Hsp_midline>||||||||||||||||||||</Hsp_midline>
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Jan Kanis <jan.code@jankanis.nl>
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148 </Hsp>
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Jan Kanis <jan.code@jankanis.nl>
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149 </Hit_hsps>
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150 </Hit>
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151 <Hit>
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Jan Kanis <jan.code@jankanis.nl>
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152 <Hit_num>2</Hit_num>
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153 <Hit_id>gnl|BL_ORD_ID|2</Hit_id>
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154 <Hit_def>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</Hit_def>
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Jan Kanis <jan.code@jankanis.nl>
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155 <Hit_accession>2</Hit_accession>
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Jan Kanis <jan.code@jankanis.nl>
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156 <Hit_len>323</Hit_len>
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Jan Kanis <jan.code@jankanis.nl>
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157 <Hit_hsps>
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Jan Kanis <jan.code@jankanis.nl>
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158 <Hsp>
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Jan Kanis <jan.code@jankanis.nl>
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159 <Hsp_num>1</Hsp_num>
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160 <Hsp_bit-score>40.14</Hsp_bit-score>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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161 <Hsp_score>20</Hsp_score>
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Jan Kanis <jan.code@jankanis.nl>
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162 <Hsp_evalue>1.51296e-07</Hsp_evalue>
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Jan Kanis <jan.code@jankanis.nl>
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163 <Hsp_query-from>1</Hsp_query-from>
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Jan Kanis <jan.code@jankanis.nl>
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164 <Hsp_query-to>20</Hsp_query-to>
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Jan Kanis <jan.code@jankanis.nl>
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165 <Hsp_hit-from>224</Hsp_hit-from>
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Jan Kanis <jan.code@jankanis.nl>
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166 <Hsp_hit-to>243</Hsp_hit-to>
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Jan Kanis <jan.code@jankanis.nl>
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167 <Hsp_query-frame>1</Hsp_query-frame>
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Jan Kanis <jan.code@jankanis.nl>
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168 <Hsp_hit-frame>1</Hsp_hit-frame>
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Jan Kanis <jan.code@jankanis.nl>
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169 <Hsp_identity>20</Hsp_identity>
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Jan Kanis <jan.code@jankanis.nl>
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170 <Hsp_positive>20</Hsp_positive>
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Jan Kanis <jan.code@jankanis.nl>
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171 <Hsp_gaps>0</Hsp_gaps>
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Jan Kanis <jan.code@jankanis.nl>
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172 <Hsp_align-len>20</Hsp_align-len>
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173 <Hsp_qseq>CGCGCGCGGTGTCATCTATG</Hsp_qseq>
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Jan Kanis <jan.code@jankanis.nl>
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174 <Hsp_hseq>CGCGCGCGGTGTCATCTATG</Hsp_hseq>
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Jan Kanis <jan.code@jankanis.nl>
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175 <Hsp_midline>||||||||||||||||||||</Hsp_midline>
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Jan Kanis <jan.code@jankanis.nl>
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176 </Hsp>
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Jan Kanis <jan.code@jankanis.nl>
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177 </Hit_hsps>
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178 </Hit>
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179 <Hit>
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180 <Hit_num>3</Hit_num>
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181 <Hit_id>gnl|BL_ORD_ID|1</Hit_id>
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Jan Kanis <jan.code@jankanis.nl>
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182 <Hit_def>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&apos;UTR/plant_junction_region.|-9105899556052450000</Hit_def>
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Jan Kanis <jan.code@jankanis.nl>
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183 <Hit_accession>1</Hit_accession>
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Jan Kanis <jan.code@jankanis.nl>
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184 <Hit_len>1045</Hit_len>
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Jan Kanis <jan.code@jankanis.nl>
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185 <Hit_hsps>
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186 <Hsp>
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Jan Kanis <jan.code@jankanis.nl>
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187 <Hsp_num>1</Hsp_num>
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188 <Hsp_bit-score>34.1929</Hsp_bit-score>
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Jan Kanis <jan.code@jankanis.nl>
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189 <Hsp_score>17</Hsp_score>
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190 <Hsp_evalue>9.33411e-06</Hsp_evalue>
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Jan Kanis <jan.code@jankanis.nl>
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191 <Hsp_query-from>4</Hsp_query-from>
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192 <Hsp_query-to>20</Hsp_query-to>
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Jan Kanis <jan.code@jankanis.nl>
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193 <Hsp_hit-from>2</Hsp_hit-from>
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194 <Hsp_hit-to>18</Hsp_hit-to>
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195 <Hsp_query-frame>1</Hsp_query-frame>
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196 <Hsp_hit-frame>1</Hsp_hit-frame>
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Jan Kanis <jan.code@jankanis.nl>
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197 <Hsp_identity>17</Hsp_identity>
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Jan Kanis <jan.code@jankanis.nl>
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198 <Hsp_positive>17</Hsp_positive>
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Jan Kanis <jan.code@jankanis.nl>
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199 <Hsp_gaps>0</Hsp_gaps>
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200 <Hsp_align-len>17</Hsp_align-len>
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201 <Hsp_qseq>GCGCGGTGTCATCTATG</Hsp_qseq>
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202 <Hsp_hseq>GCGCGGTGTCATCTATG</Hsp_hseq>
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Jan Kanis <jan.code@jankanis.nl>
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203 <Hsp_midline>|||||||||||||||||</Hsp_midline>
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204 </Hsp>
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Jan Kanis <jan.code@jankanis.nl>
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205 </Hit_hsps>
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206 </Hit>
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207 </Iteration_hits>
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208 <Iteration_stat>
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Jan Kanis <jan.code@jankanis.nl>
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209 <Statistics>
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210 <Statistics_db-num>8</Statistics_db-num>
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211 <Statistics_db-len>15339</Statistics_db-len>
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212 <Statistics_hsp-len>8</Statistics_hsp-len>
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213 <Statistics_eff-space>183300</Statistics_eff-space>
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214 <Statistics_kappa>0.710602795216363</Statistics_kappa>
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215 <Statistics_lambda>1.37406312246009</Statistics_lambda>
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216 <Statistics_entropy>1.30724660390929</Statistics_entropy>
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217 </Statistics>
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218 </Iteration_stat>
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219 </Iteration>
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220 <Iteration>
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221 <Iteration_iter-num>4</Iteration_iter-num>
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222 <Iteration_query-ID>Query_4</Iteration_query-ID>
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Jan Kanis <jan.code@jankanis.nl>
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223 <Iteration_query-def>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def>
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224 <Iteration_query-len>24</Iteration_query-len>
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225 <Iteration_hits>
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226 </Iteration_hits>
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227 <Iteration_stat>
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228 <Statistics>
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229 <Statistics_db-num>8</Statistics_db-num>
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230 <Statistics_db-len>15339</Statistics_db-len>
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231 <Statistics_hsp-len>9</Statistics_hsp-len>
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232 <Statistics_eff-space>229005</Statistics_eff-space>
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233 <Statistics_kappa>0.710602795216363</Statistics_kappa>
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234 <Statistics_lambda>1.37406312246009</Statistics_lambda>
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235 <Statistics_entropy>1.30724660390929</Statistics_entropy>
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236 </Statistics>
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237 </Iteration_stat>
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Jan Kanis <jan.code@jankanis.nl>
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238 <Iteration_message>No hits found</Iteration_message>
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239 </Iteration>
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240 <Iteration>
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241 <Iteration_iter-num>5</Iteration_iter-num>
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242 <Iteration_query-ID>Query_5</Iteration_query-ID>
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243 <Iteration_query-def>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def>
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244 <Iteration_query-len>20</Iteration_query-len>
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245 <Iteration_hits>
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246 </Iteration_hits>
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247 <Iteration_stat>
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248 <Statistics>
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249 <Statistics_db-num>8</Statistics_db-num>
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250 <Statistics_db-len>15339</Statistics_db-len>
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251 <Statistics_hsp-len>8</Statistics_hsp-len>
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252 <Statistics_eff-space>183300</Statistics_eff-space>
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253 <Statistics_kappa>0.710602795216363</Statistics_kappa>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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254 <Statistics_lambda>1.37406312246009</Statistics_lambda>
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Jan Kanis <jan.code@jankanis.nl>
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255 <Statistics_entropy>1.30724660390929</Statistics_entropy>
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256 </Statistics>
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257 </Iteration_stat>
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Jan Kanis <jan.code@jankanis.nl>
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258 <Iteration_message>No hits found</Iteration_message>
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259 </Iteration>
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Jan Kanis <jan.code@jankanis.nl>
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260 <Iteration>
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Jan Kanis <jan.code@jankanis.nl>
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261 <Iteration_iter-num>6</Iteration_iter-num>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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262 <Iteration_query-ID>Query_6</Iteration_query-ID>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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263 <Iteration_query-def>Probe|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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264 <Iteration_query-len>25</Iteration_query-len>
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Jan Kanis <jan.code@jankanis.nl>
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265 <Iteration_hits>
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266 <Hit>
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267 <Hit_num>1</Hit_num>
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268 <Hit_id>gnl|BL_ORD_ID|7</Hit_id>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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269 <Hit_def>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</Hit_def>
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Jan Kanis <jan.code@jankanis.nl>
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270 <Hit_accession>7</Hit_accession>
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Jan Kanis <jan.code@jankanis.nl>
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271 <Hit_len>4983</Hit_len>
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Jan Kanis <jan.code@jankanis.nl>
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272 <Hit_hsps>
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273 <Hsp>
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Jan Kanis <jan.code@jankanis.nl>
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274 <Hsp_num>1</Hsp_num>
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275 <Hsp_bit-score>36.1753</Hsp_bit-score>
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Jan Kanis <jan.code@jankanis.nl>
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276 <Hsp_score>18</Hsp_score>
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Jan Kanis <jan.code@jankanis.nl>
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277 <Hsp_evalue>3.14801e-06</Hsp_evalue>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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278 <Hsp_query-from>1</Hsp_query-from>
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Jan Kanis <jan.code@jankanis.nl>
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279 <Hsp_query-to>22</Hsp_query-to>
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Jan Kanis <jan.code@jankanis.nl>
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280 <Hsp_hit-from>2344</Hsp_hit-from>
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Jan Kanis <jan.code@jankanis.nl>
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281 <Hsp_hit-to>2365</Hsp_hit-to>
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Jan Kanis <jan.code@jankanis.nl>
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282 <Hsp_query-frame>1</Hsp_query-frame>
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Jan Kanis <jan.code@jankanis.nl>
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283 <Hsp_hit-frame>1</Hsp_hit-frame>
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Jan Kanis <jan.code@jankanis.nl>
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284 <Hsp_identity>21</Hsp_identity>
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Jan Kanis <jan.code@jankanis.nl>
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285 <Hsp_positive>21</Hsp_positive>
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Jan Kanis <jan.code@jankanis.nl>
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286 <Hsp_gaps>0</Hsp_gaps>
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Jan Kanis <jan.code@jankanis.nl>
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287 <Hsp_align-len>22</Hsp_align-len>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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288 <Hsp_qseq>ACATGAACAGCGCCTTGACCAC</Hsp_qseq>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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289 <Hsp_hseq>ACATGAACAGCGCCCTGACCAC</Hsp_hseq>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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290 <Hsp_midline>|||||||||||||| |||||||</Hsp_midline>
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Jan Kanis <jan.code@jankanis.nl>
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291 </Hsp>
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Jan Kanis <jan.code@jankanis.nl>
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292 </Hit_hsps>
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Jan Kanis <jan.code@jankanis.nl>
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293 </Hit>
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294 <Hit>
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Jan Kanis <jan.code@jankanis.nl>
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295 <Hit_num>2</Hit_num>
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296 <Hit_id>gnl|BL_ORD_ID|6</Hit_id>
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297 <Hit_def>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</Hit_def>
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298 <Hit_accession>6</Hit_accession>
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Jan Kanis <jan.code@jankanis.nl>
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299 <Hit_len>4180</Hit_len>
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Jan Kanis <jan.code@jankanis.nl>
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300 <Hit_hsps>
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301 <Hsp>
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302 <Hsp_num>1</Hsp_num>
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303 <Hsp_bit-score>36.1753</Hsp_bit-score>
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Jan Kanis <jan.code@jankanis.nl>
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304 <Hsp_score>18</Hsp_score>
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Jan Kanis <jan.code@jankanis.nl>
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305 <Hsp_evalue>3.14801e-06</Hsp_evalue>
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Jan Kanis <jan.code@jankanis.nl>
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306 <Hsp_query-from>1</Hsp_query-from>
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Jan Kanis <jan.code@jankanis.nl>
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307 <Hsp_query-to>22</Hsp_query-to>
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Jan Kanis <jan.code@jankanis.nl>
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308 <Hsp_hit-from>1541</Hsp_hit-from>
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Jan Kanis <jan.code@jankanis.nl>
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309 <Hsp_hit-to>1562</Hsp_hit-to>
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Jan Kanis <jan.code@jankanis.nl>
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310 <Hsp_query-frame>1</Hsp_query-frame>
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Jan Kanis <jan.code@jankanis.nl>
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311 <Hsp_hit-frame>1</Hsp_hit-frame>
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Jan Kanis <jan.code@jankanis.nl>
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312 <Hsp_identity>21</Hsp_identity>
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Jan Kanis <jan.code@jankanis.nl>
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313 <Hsp_positive>21</Hsp_positive>
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Jan Kanis <jan.code@jankanis.nl>
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314 <Hsp_gaps>0</Hsp_gaps>
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Jan Kanis <jan.code@jankanis.nl>
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315 <Hsp_align-len>22</Hsp_align-len>
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Jan Kanis <jan.code@jankanis.nl>
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316 <Hsp_qseq>ACATGAACAGCGCCTTGACCAC</Hsp_qseq>
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Jan Kanis <jan.code@jankanis.nl>
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317 <Hsp_hseq>ACATGAACAGCGCCCTGACCAC</Hsp_hseq>
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Jan Kanis <jan.code@jankanis.nl>
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318 <Hsp_midline>|||||||||||||| |||||||</Hsp_midline>
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Jan Kanis <jan.code@jankanis.nl>
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319 </Hsp>
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Jan Kanis <jan.code@jankanis.nl>
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320 </Hit_hsps>
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Jan Kanis <jan.code@jankanis.nl>
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321 </Hit>
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322 </Iteration_hits>
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Jan Kanis <jan.code@jankanis.nl>
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323 <Iteration_stat>
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Jan Kanis <jan.code@jankanis.nl>
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324 <Statistics>
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Jan Kanis <jan.code@jankanis.nl>
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325 <Statistics_db-num>8</Statistics_db-num>
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Jan Kanis <jan.code@jankanis.nl>
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326 <Statistics_db-len>15339</Statistics_db-len>
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Jan Kanis <jan.code@jankanis.nl>
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327 <Statistics_hsp-len>9</Statistics_hsp-len>
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Jan Kanis <jan.code@jankanis.nl>
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328 <Statistics_eff-space>244272</Statistics_eff-space>
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Jan Kanis <jan.code@jankanis.nl>
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329 <Statistics_kappa>0.710602795216363</Statistics_kappa>
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Jan Kanis <jan.code@jankanis.nl>
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330 <Statistics_lambda>1.37406312246009</Statistics_lambda>
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Jan Kanis <jan.code@jankanis.nl>
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331 <Statistics_entropy>1.30724660390929</Statistics_entropy>
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Jan Kanis <jan.code@jankanis.nl>
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332 </Statistics>
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Jan Kanis <jan.code@jankanis.nl>
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333 </Iteration_stat>
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334 </Iteration>
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Jan Kanis <jan.code@jankanis.nl>
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335 <Iteration>
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Jan Kanis <jan.code@jankanis.nl>
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336 <Iteration_iter-num>7</Iteration_iter-num>
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Jan Kanis <jan.code@jankanis.nl>
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337 <Iteration_query-ID>Query_7</Iteration_query-ID>
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Jan Kanis <jan.code@jankanis.nl>
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338 <Iteration_query-def>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</Iteration_query-def>
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Jan Kanis <jan.code@jankanis.nl>
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339 <Iteration_query-len>74</Iteration_query-len>
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Jan Kanis <jan.code@jankanis.nl>
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340 <Iteration_hits>
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341 <Hit>
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342 <Hit_num>1</Hit_num>
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Jan Kanis <jan.code@jankanis.nl>
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343 <Hit_id>gnl|BL_ORD_ID|7</Hit_id>
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Jan Kanis <jan.code@jankanis.nl>
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344 <Hit_def>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</Hit_def>
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Jan Kanis <jan.code@jankanis.nl>
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345 <Hit_accession>7</Hit_accession>
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Jan Kanis <jan.code@jankanis.nl>
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346 <Hit_len>4983</Hit_len>
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Jan Kanis <jan.code@jankanis.nl>
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347 <Hit_hsps>
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348 <Hsp>
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349 <Hsp_num>1</Hsp_num>
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350 <Hsp_bit-score>67.8929</Hsp_bit-score>
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351 <Hsp_score>34</Hsp_score>
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Jan Kanis <jan.code@jankanis.nl>
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352 <Hsp_evalue>3.56369e-15</Hsp_evalue>
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Jan Kanis <jan.code@jankanis.nl>
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353 <Hsp_query-from>1</Hsp_query-from>
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354 <Hsp_query-to>74</Hsp_query-to>
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Jan Kanis <jan.code@jankanis.nl>
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355 <Hsp_hit-from>2319</Hsp_hit-from>
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Jan Kanis <jan.code@jankanis.nl>
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356 <Hsp_hit-to>2392</Hsp_hit-to>
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Jan Kanis <jan.code@jankanis.nl>
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357 <Hsp_query-frame>1</Hsp_query-frame>
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358 <Hsp_hit-frame>1</Hsp_hit-frame>
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359 <Hsp_identity>64</Hsp_identity>
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Jan Kanis <jan.code@jankanis.nl>
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360 <Hsp_positive>64</Hsp_positive>
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Jan Kanis <jan.code@jankanis.nl>
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361 <Hsp_gaps>0</Hsp_gaps>
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Jan Kanis <jan.code@jankanis.nl>
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362 <Hsp_align-len>74</Hsp_align-len>
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Jan Kanis <jan.code@jankanis.nl>
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363 <Hsp_qseq>GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA</Hsp_qseq>
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Jan Kanis <jan.code@jankanis.nl>
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364 <Hsp_hseq>GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA</Hsp_hseq>
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Jan Kanis <jan.code@jankanis.nl>
parents:
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365 <Hsp_midline>||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||</Hsp_midline>
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366 </Hsp>
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367 </Hit_hsps>
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368 </Hit>
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369 <Hit>
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370 <Hit_num>2</Hit_num>
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371 <Hit_id>gnl|BL_ORD_ID|6</Hit_id>
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372 <Hit_def>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</Hit_def>
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Jan Kanis <jan.code@jankanis.nl>
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373 <Hit_accession>6</Hit_accession>
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Jan Kanis <jan.code@jankanis.nl>
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374 <Hit_len>4180</Hit_len>
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Jan Kanis <jan.code@jankanis.nl>
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375 <Hit_hsps>
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Jan Kanis <jan.code@jankanis.nl>
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376 <Hsp>
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Jan Kanis <jan.code@jankanis.nl>
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377 <Hsp_num>1</Hsp_num>
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Jan Kanis <jan.code@jankanis.nl>
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378 <Hsp_bit-score>67.8929</Hsp_bit-score>
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379 <Hsp_score>34</Hsp_score>
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380 <Hsp_evalue>3.56369e-15</Hsp_evalue>
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381 <Hsp_query-from>1</Hsp_query-from>
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382 <Hsp_query-to>74</Hsp_query-to>
70
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383 <Hsp_hit-from>1589</Hsp_hit-from>
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384 <Hsp_hit-to>1516</Hsp_hit-to>
25
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385 <Hsp_query-frame>1</Hsp_query-frame>
70
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386 <Hsp_hit-frame>-1</Hsp_hit-frame>
25
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387 <Hsp_identity>64</Hsp_identity>
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388 <Hsp_positive>64</Hsp_positive>
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389 <Hsp_gaps>0</Hsp_gaps>
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390 <Hsp_align-len>74</Hsp_align-len>
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391 <Hsp_qseq>GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA</Hsp_qseq>
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392 <Hsp_hseq>GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA</Hsp_hseq>
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Jan Kanis <jan.code@jankanis.nl>
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393 <Hsp_midline>||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||</Hsp_midline>
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394 </Hsp>
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395 </Hit_hsps>
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396 </Hit>
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397 </Iteration_hits>
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398 <Iteration_stat>
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399 <Statistics>
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400 <Statistics_db-num>8</Statistics_db-num>
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401 <Statistics_db-len>15339</Statistics_db-len>
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402 <Statistics_hsp-len>10</Statistics_hsp-len>
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403 <Statistics_eff-space>976576</Statistics_eff-space>
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404 <Statistics_kappa>0.710602795216363</Statistics_kappa>
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405 <Statistics_lambda>1.37406312246009</Statistics_lambda>
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406 <Statistics_entropy>1.30724660390929</Statistics_entropy>
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407 </Statistics>
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408 </Iteration_stat>
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409 </Iteration>
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410 </BlastOutput_iterations>
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411 </BlastOutput>
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412