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1 <!DOCTYPE html>
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2 <html>
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3 <head>
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4 <meta charset="UTF-8">
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5 <meta name=generator content="blast2html; see ...">
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6
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7 <title>Blast output</title>
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8
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9 <style>
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10 body {
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11 color: #333333;
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12 font-family: Arial,Sans-Serif;
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13 }
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14
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15 :link {
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16 color: #336699;
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17 }
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18
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19 .right {
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20 float: right;
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21 }
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22
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23 /* Galaxy with html sanitization enabled strips the header of this html page. If so, show the user a warning.*/
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24 #strip_html_warning {
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25 display: none;
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26 }
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27
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28 #content {
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29 margin: 0 2em;
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30 padding: 0.5em;
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31 border: 1px solid #888888;
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32 background-color: #d3dff5;
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33 }
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34
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35 h1, h2, h3, h4, h5, h6 {
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36 color: #2A6979;
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37 font-family: arial,verdana,sans-serif;
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38 letter-spacing: -1px;
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39 margin: 1.2em 0 0.3em;
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40 }
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41
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42 h1 {
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43 border-bottom: 1px solid #CCCCCC;
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44 font-size: 150%;
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45 padding-bottom: 0.1em;
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46 }
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47
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48 h2 {
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49 font-size: 120%;
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50 font-weight: bold;
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51 }
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52
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53 h4.darkHeader {
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54 color: #4D4D4D;
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55 letter-spacing: 0;
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56 font-weight: bold;
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57 }
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58
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59 #nodata {
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60 font-weight: bold;
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61 }
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62
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63 .index {
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64 margin-bottom: 3em;
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65 }
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66 .index div.indexentry {
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67 margin: 1.2em 1.6em;
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68 font-weight: bold;
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69 font-size: 100%;
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70 }
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71
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72 .headerdata {
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73 font-size: 90%;
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74 }
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75 .headerdata .param {
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76 font-weight: bold;
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77 text-align: right;
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78 padding: 0 1em;
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79 }
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80
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81 .grey {
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82 background-color: #eeeeee;
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83 border: 1px solid #cccccc;
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84 padding: 1em;
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85 }
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86
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87 .white {
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88 background-color: white;
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89 border: 1px solid #cccccc;
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90 padding: 1.5em 2%;
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91 }
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92
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93 .graphicrow {
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94 clear: left;
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95 width: 100%;
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96 }
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97
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98 .graphicitem {
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99 float: left;
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100 }
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101
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102
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103
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104 .graphics .grey {
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105 text-align: center;
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106 }
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107
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108 .graphic {
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109 background-color: white;
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110 border: 2px solid black;
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111 padding: 1.5em;
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112 margin: auto;
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113 }
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114
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115 .centered, .defline, div.legend, div.tablewrapper {
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116 margin-left: auto;
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117 margin-right: auto;
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118 }
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119
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120 .defline {
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121 background-color: white;
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122 border: 1px solid black;
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123 margin: .5em auto;
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124 padding-left: .2em;
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125 padding-right: .2em;
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126 max-width: 50em;
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127 text-align: left;
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128 height: 2.8em;
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129 overflow-y: hidden;
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130 }
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131
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132 div.legend {
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133 max-width: 40em;
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134 }
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135 div.legend div {
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136 width: 100%;
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137 color: white;
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138 font-weight: bold;
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139 border-spacing: 0;
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140 }
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141 div.legend div .graphicitem {
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142 width: 20%;
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143 padding: 0;
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144 margin: 0;
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145 border: none;
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146 }
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147
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148 div.tablewrapper {
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149 width: 50%;
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150 min-width: 60em;
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151 }
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152
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153 /* For small widths we give the graphic 100% */
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154 @media (max-width: 72.5em) {
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155 div.tablewrapper {
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156 width: 100%;
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157 min-width: 0px;
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158 }
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159 }
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160
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161 .scale {
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162 width: 100%;
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163 margin: .5em 0;
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164 font-weight: bold;
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165 }
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166 .scale div {
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167 color: red;
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168 text-align: left;
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169 }
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170 .scale .graphicrow {
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171 margin: .5em 0 .5em 0;
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172 color: white;
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173 }
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174 .scale .graphicitem {
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175 position: relative;
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176 }
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177 .scale .graphicitem div {
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178 margin: 0 1px;
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179 padding: 0 2px;
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180 text-align: right;
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181 background-color: red;
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182 color: white;
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183 }
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184 .scale .graphicitem:first-child div {
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185 margin-left: 0px;
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186 }
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187 .scale .graphicitem:last-child div {
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188 margin-right: 0px;
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189 }
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190 .scale .graphicitem .lastlabel {
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191 position: absolute;
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192 top: 0px;
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193 left: 100%;
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194 background-color: transparent;
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195 color: red;
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196 }
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197
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198 a.matchresult {
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199 display: block;
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200 margin: 0;
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201 padding: 0;
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202 }
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203 div.matchrow {
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204 margin-top: 4px;
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205 }
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206 div.matchrow, div.matchitem {
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207 height: 4px;
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208 }
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209
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210
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211 table.descriptiontable {
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212 font-size: 85%;
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213 border: 1px solid #97b0c8;
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214 border-spacing: 0;
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215 color: #222222;
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216 line-height: 1.3em;
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217 background-color: white;
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218 }
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219 table.descriptiontable col:first-child {
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220 width: 100%;
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221 }
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222 table.descriptiontable tr:hover {
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223 background-color: #D5DEE3;
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224 }
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225 table.descriptiontable th {
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226 color: #14376C;
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227 font-weight: normal;
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228 background-color: #F0F0F0;
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229 background: linear-gradient(#FFFFFF, #F0F0F0);
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230 border-bottom: 1px solid #D4DFE9;
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231 border-right: 1px solid #CFCFCF;
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232 border-left: 0px solid black;
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233 border-top: 0px solid black;
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234 }
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235 table.descriptiontable td {
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236 overflow: hidden;
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237 text-align: center;
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238 padding: .4em .8em;
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239 }
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240 table.descriptiontable td div {
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241 width: 1em;
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242 overflow: visible;
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243 white-space: nowrap;
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244 text-align: left;
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245 }
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246
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247
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248
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249 .alignments .white {
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250 padding: 1.5em 1em;
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251 }
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252
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253 .alignment {
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254 border-top: 1px solid black;
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255 padding-left: 1em;
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256 padding-right: 1em;
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257 }
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258
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259 div.linkheader {
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260 padding-top: .2em;
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261 font-size: 85%;
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262 color: #14376C;
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263 }
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264 div.linkheader a.linkheader {
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265 margin-right: 1em;
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266 }
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267 div.linkheader .right a {
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268 text-decoration: none;
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269 }
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270
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271 .title .hittitle {
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272 color: #222222;
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273 margin-bottom: .3em;
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274 }
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275 .title .titleinfo {
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276 font-size: 80%;
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277 margin-top: 0;
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278 margin-bottom: .3em;
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279 }
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280 .title .titleinfo .b {
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281 color: #606060;
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282 font-weight: bold;
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283 font-size: 90%;
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284 }
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285
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286 .moretitles {
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287 margin: 1.2em;
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288 }
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289 .moretitles .titleinfo {
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290 margin: 0;
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291 padding: 0;
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292 }
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293 .moretitles .hittitle {
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294 margin: .4em 0 .2em 0;
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295 padding: 0;
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296 }
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297
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298 a.showmoretitles {
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299 font-size: 75%;
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300 color: #336699;
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301 font-weight: bold;
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302 margin-top: 0;
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303 }
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304 a.showmoretitles:hover {
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305 }
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306
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307 .hotspot {
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308 color: #606060;
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309 font-family: verdana, arial, sans-serif;
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310 margin-bottom: 2.5em;
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311 }
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312
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313 .hotspot p.range {
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314 font-size: 70%;
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315 margin-top: 0;
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316 margin-top: 1em;
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317 margin-bottom: .2em;
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318 }
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319 .hotspot p.range span.range {
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320 font-weight: bold;
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321 }
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322 .hotspot p.range a.range {
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323 margin-left: .5em;
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324 }
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325
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326 table.hotspotstable {
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327 border-top: 1px solid;
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328 border-bottom: 1px solid;
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329 text-align: left;
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330 border-collapse: collapse;
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331 }
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332 table.hotspotstable th, table.hotspotstable td {
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333 padding: .1em 1em;
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334 }
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335 table.hotspotstable th {
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336 font-size: 70%;
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337 }
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338 table.hotspotstable td {
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339 min-width: 7em;
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340 color: #222222;
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341 font-size: 80%;
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342 }
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343
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344 pre.alignmentgraphic {
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345 color: #222222;
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346 }
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347
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348 footer {
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349 text-align: center;
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350 color: #cccccc;
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351 font-size: 70%;
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352 margin-top: 1em;
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353 }
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354 footer :link {
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355 color: #5588cc;
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356 }
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357
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358 </style>
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359
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360 <script type="text/javascript">
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361 function toggle_visibility(id) {
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362 var e = document.getElementById(id);
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363 if(e.style.display != 'block')
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364 e.style.display = 'block';
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365 else
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366 e.style.display = 'none';
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367 }
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368 </script>
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369
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370 </head>
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371
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372
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373 <body>
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374
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375 <div id="strip_html_warning">
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376 <!-- This div should be hidden by the header css block. Galaxy
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377 strips all css, breaking this page but making this warning
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378 visible. This warning contains some ugly old skool tabular html
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379 layout that is not stripped. -->
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380 <table bgcolor="#FFE5C9"><tr><td><font color="red"><b>
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381 <font size=5><center>This html page seems to have been stripped by Galaxy.</center></font>
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382 Disable Galaxy's html sanitization feature to view the full page (see <font face=monospace>sanitize_all_html</font> in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.
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383 </b></font></td></tr></table>
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384 </div>
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385
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386 <div id=content>
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387
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388
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389 <section class=index>
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390 <h1>Queries</h1>
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391
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392 <div class=indexentry><a href="#match1">
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393 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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394 (20 letters, 0 hits)
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395 </a></div>
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396 <div class=indexentry><a href="#match2">
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397 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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398 (20 letters, 0 hits)
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399 </a></div>
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400 <div class=indexentry><a href="#match3">
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401 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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402 (20 letters, 1 hits)
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403 </a></div>
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404 <div class=indexentry><a href="#match4">
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405 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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406 (20 letters, 0 hits)
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407 </a></div>
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408 <div class=indexentry><a href="#match5">
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409 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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410 (20 letters, 0 hits)
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411 </a></div>
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412 <div class=indexentry><a href="#match6">
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413 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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414 (20 letters, 1 hits)
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415 </a></div>
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416 <div class=indexentry><a href="#match7">
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417 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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418 (20 letters, 0 hits)
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419 </a></div>
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420 <div class=indexentry><a href="#match8">
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421 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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422 (20 letters, 0 hits)
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423 </a></div>
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424 <div class=indexentry><a href="#match9">
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425 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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426 (20 letters, 0 hits)
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427 </a></div>
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428 <div class=indexentry><a href="#match10">
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429 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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430 (20 letters, 0 hits)
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431 </a></div>
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432 <div class=indexentry><a href="#match11">
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433 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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434 (20 letters, 0 hits)
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435 </a></div>
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436 <div class=indexentry><a href="#match12">
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437 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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438 (20 letters, 0 hits)
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439 </a></div>
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440 <div class=indexentry><a href="#match13">
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441 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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442 (20 letters, 0 hits)
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443 </a></div>
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444 <div class=indexentry><a href="#match14">
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445 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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446 (20 letters, 0 hits)
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447 </a></div>
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448 <div class=indexentry><a href="#match15">
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449 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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450 (20 letters, 0 hits)
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451 </a></div>
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452 <div class=indexentry><a href="#match16">
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453 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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454 (20 letters, 0 hits)
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455 </a></div>
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456 <div class=indexentry><a href="#match17">
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|
|
457 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
458 (20 letters, 0 hits)
|
|
|
459 </a></div>
|
|
|
460 <div class=indexentry><a href="#match18">
|
|
|
461 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
462 (20 letters, 1 hits)
|
|
|
463 </a></div>
|
|
|
464 <div class=indexentry><a href="#match19">
|
|
|
465 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
466 (20 letters, 1 hits)
|
|
|
467 </a></div>
|
|
|
468 <div class=indexentry><a href="#match20">
|
|
|
469 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
470 (20 letters, 0 hits)
|
|
|
471 </a></div>
|
|
|
472 <div class=indexentry><a href="#match21">
|
|
|
473 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
474 (20 letters, 0 hits)
|
|
|
475 </a></div>
|
|
|
476 <div class=indexentry><a href="#match22">
|
|
|
477 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
478 (20 letters, 1 hits)
|
|
|
479 </a></div>
|
|
|
480 <div class=indexentry><a href="#match23">
|
|
|
481 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
482 (20 letters, 0 hits)
|
|
|
483 </a></div>
|
|
|
484 <div class=indexentry><a href="#match24">
|
|
|
485 Query_3: Probe|NOST-Spec_(Genetic_ID)
|
|
|
486 (20 letters, 0 hits)
|
|
|
487 </a></div>
|
|
|
488 <div class=indexentry><a href="#match25">
|
|
|
489 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
490 (24 letters, 0 hits)
|
|
|
491 </a></div>
|
|
|
492 <div class=indexentry><a href="#match26">
|
|
|
493 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
494 (24 letters, 0 hits)
|
|
|
495 </a></div>
|
|
|
496 <div class=indexentry><a href="#match27">
|
|
|
497 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
498 (24 letters, 0 hits)
|
|
|
499 </a></div>
|
|
|
500 <div class=indexentry><a href="#match28">
|
|
|
501 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
502 (24 letters, 0 hits)
|
|
|
503 </a></div>
|
|
|
504 <div class=indexentry><a href="#match29">
|
|
|
505 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
506 (24 letters, 0 hits)
|
|
|
507 </a></div>
|
|
|
508 <div class=indexentry><a href="#match30">
|
|
|
509 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
510 (24 letters, 0 hits)
|
|
|
511 </a></div>
|
|
|
512 <div class=indexentry><a href="#match31">
|
|
|
513 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
514 (24 letters, 0 hits)
|
|
|
515 </a></div>
|
|
|
516 <div class=indexentry><a href="#match32">
|
|
|
517 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
518 (24 letters, 0 hits)
|
|
|
519 </a></div>
|
|
|
520 <div class=indexentry><a href="#match33">
|
|
|
521 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
522 (20 letters, 0 hits)
|
|
|
523 </a></div>
|
|
|
524 <div class=indexentry><a href="#match34">
|
|
|
525 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
526 (20 letters, 0 hits)
|
|
|
527 </a></div>
|
|
|
528 <div class=indexentry><a href="#match35">
|
|
|
529 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
530 (20 letters, 0 hits)
|
|
|
531 </a></div>
|
|
|
532 <div class=indexentry><a href="#match36">
|
|
|
533 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
534 (20 letters, 0 hits)
|
|
|
535 </a></div>
|
|
|
536 <div class=indexentry><a href="#match37">
|
|
|
537 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
538 (20 letters, 0 hits)
|
|
|
539 </a></div>
|
|
|
540 <div class=indexentry><a href="#match38">
|
|
|
541 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
542 (20 letters, 0 hits)
|
|
|
543 </a></div>
|
|
|
544 <div class=indexentry><a href="#match39">
|
|
|
545 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
546 (20 letters, 0 hits)
|
|
|
547 </a></div>
|
|
|
548 <div class=indexentry><a href="#match40">
|
|
|
549 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
550 (20 letters, 0 hits)
|
|
|
551 </a></div>
|
|
|
552 <div class=indexentry><a href="#match41">
|
|
|
553 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
554 (25 letters, 0 hits)
|
|
|
555 </a></div>
|
|
|
556 <div class=indexentry><a href="#match42">
|
|
|
557 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
558 (25 letters, 0 hits)
|
|
|
559 </a></div>
|
|
|
560 <div class=indexentry><a href="#match43">
|
|
|
561 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
562 (25 letters, 0 hits)
|
|
|
563 </a></div>
|
|
|
564 <div class=indexentry><a href="#match44">
|
|
|
565 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
566 (25 letters, 0 hits)
|
|
|
567 </a></div>
|
|
|
568 <div class=indexentry><a href="#match45">
|
|
|
569 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
570 (25 letters, 0 hits)
|
|
|
571 </a></div>
|
|
|
572 <div class=indexentry><a href="#match46">
|
|
|
573 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
574 (25 letters, 0 hits)
|
|
|
575 </a></div>
|
|
|
576 <div class=indexentry><a href="#match47">
|
|
|
577 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
578 (25 letters, 1 hits)
|
|
|
579 </a></div>
|
|
|
580 <div class=indexentry><a href="#match48">
|
|
|
581 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
582 (25 letters, 1 hits)
|
|
|
583 </a></div>
|
|
|
584 <div class=indexentry><a href="#match49">
|
|
|
585 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
586 (74 letters, 0 hits)
|
|
|
587 </a></div>
|
|
|
588 <div class=indexentry><a href="#match50">
|
|
|
589 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
590 (74 letters, 0 hits)
|
|
|
591 </a></div>
|
|
|
592 <div class=indexentry><a href="#match51">
|
|
|
593 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
594 (74 letters, 0 hits)
|
|
|
595 </a></div>
|
|
|
596 <div class=indexentry><a href="#match52">
|
|
|
597 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
598 (74 letters, 0 hits)
|
|
|
599 </a></div>
|
|
|
600 <div class=indexentry><a href="#match53">
|
|
|
601 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
602 (74 letters, 0 hits)
|
|
|
603 </a></div>
|
|
|
604 <div class=indexentry><a href="#match54">
|
|
|
605 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
606 (74 letters, 0 hits)
|
|
|
607 </a></div>
|
|
|
608 <div class=indexentry><a href="#match55">
|
|
|
609 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
610 (74 letters, 1 hits)
|
|
|
611 </a></div>
|
|
|
612 <div class=indexentry><a href="#match56">
|
|
|
613 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
|
|
|
614 (74 letters, 1 hits)
|
|
|
615 </a></div>
|
|
|
616
|
|
|
617 </section>
|
|
|
618
|
|
|
619
|
|
|
620 <section class=match id=match1>
|
|
|
621
|
|
|
622 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
623
|
|
|
624 <section class=header>
|
|
|
625
|
|
|
626 <table class=headerdata>
|
|
|
627 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
628 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
629 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
630 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
631 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
632 </table>
|
|
|
633
|
|
|
634 </section>
|
|
|
635
|
|
|
636 <section>
|
|
|
637 <h2>No Hits</h2>
|
|
|
638 <div class=grey>
|
|
|
639 <table class=headerdata>
|
|
|
640 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
641 </table>
|
|
|
642 </div>
|
|
|
643 </section>
|
|
|
644 </section>
|
|
|
645
|
|
|
646 <section class=match id=match2>
|
|
|
647
|
|
|
648 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
649
|
|
|
650 <section class=header>
|
|
|
651
|
|
|
652 <table class=headerdata>
|
|
|
653 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
654 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
655 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
656 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
657 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
658 </table>
|
|
|
659
|
|
|
660 </section>
|
|
|
661
|
|
|
662 <section>
|
|
|
663 <h2>No Hits</h2>
|
|
|
664 <div class=grey>
|
|
|
665 <table class=headerdata>
|
|
|
666 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
667 </table>
|
|
|
668 </div>
|
|
|
669 </section>
|
|
|
670 </section>
|
|
|
671
|
|
|
672 <section class=match id=match3>
|
|
|
673
|
|
|
674 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
675
|
|
|
676 <section class=header>
|
|
|
677
|
|
|
678 <table class=headerdata>
|
|
|
679 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
680 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
681 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
682 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
683 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
684 </table>
|
|
|
685
|
|
|
686 </section>
|
|
|
687
|
|
|
688
|
|
|
689 <section class=graphics>
|
|
|
690 <h2>Graphic Summary</h2>
|
|
|
691
|
|
|
692 <div class=grey>
|
|
|
693 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
694
|
|
|
695 <div class=defline id=defline3>
|
|
|
696 Mouse-over to show defline and scores, click to show alignments
|
|
|
697 </div>
|
|
|
698
|
|
|
699 <div class=graphic>
|
|
|
700 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
701 <div class=legend><div class=graphicrow>
|
|
|
702 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
703 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
704 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
705 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
706 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
707 </div></div>
|
|
|
708 <div style="clear: left"></div>
|
|
|
709
|
|
|
710 <div class=tablewrapper>
|
|
|
711
|
|
|
712 <div class=scale>
|
|
|
713 <div>query:</div>
|
|
|
714 <div class=graphicrow>
|
|
|
715 <div>
|
|
|
716 <div class=graphicitem style="width: 10.0%">
|
|
|
717 <div>2</div>
|
|
|
718 </div>
|
|
|
719 <div class=graphicitem style="width: 10.0%">
|
|
|
720 <div>4</div>
|
|
|
721 </div>
|
|
|
722 <div class=graphicitem style="width: 10.0%">
|
|
|
723 <div>6</div>
|
|
|
724 </div>
|
|
|
725 <div class=graphicitem style="width: 10.0%">
|
|
|
726 <div>8</div>
|
|
|
727 </div>
|
|
|
728 <div class=graphicitem style="width: 10.0%">
|
|
|
729 <div>10</div>
|
|
|
730 </div>
|
|
|
731 <div class=graphicitem style="width: 10.0%">
|
|
|
732 <div>12</div>
|
|
|
733 </div>
|
|
|
734 <div class=graphicitem style="width: 10.0%">
|
|
|
735 <div>14</div>
|
|
|
736 </div>
|
|
|
737 <div class=graphicitem style="width: 10.0%">
|
|
|
738 <div>16</div>
|
|
|
739 </div>
|
|
|
740 <div class=graphicitem style="width: 10.0%">
|
|
|
741 <div>18</div>
|
|
|
742 </div>
|
|
|
743 <div class=graphicitem style="width: 10.0%">
|
|
|
744 <div>20</div>
|
|
|
745 </div>
|
|
|
746 </div>
|
|
|
747 </div>
|
|
|
748 <div style="clear: left"></div>
|
|
|
749 </div>
|
|
|
750
|
|
|
751 <a class=matchresult
|
|
|
752 href="#hit1"
|
|
|
753 onmouseover='document.getElementById("defline3").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
|
|
|
754 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
755 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
|
|
|
756 <div class="matchrow graphicrow">
|
|
|
757 <div class="matchitem graphicitem"
|
|
|
758 style="background-color: black; width: 100.0%"></div>
|
|
|
759 </div>
|
|
|
760 </a>
|
|
|
761
|
|
|
762 </div>
|
|
|
763 </div>
|
|
|
764 </div>
|
|
|
765 </section>
|
|
|
766
|
|
|
767
|
|
|
768
|
|
|
769 <section class=descriptions>
|
|
|
770 <h2>Descriptions</h2>
|
|
|
771
|
|
|
772 <div class=grey><div class=white>
|
|
|
773 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
774
|
|
|
775 <table class=descriptiontable>
|
|
|
776 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
777 <tr>
|
|
|
778 <th>Description</th>
|
|
|
779 <th>Max score</th>
|
|
|
780 <th>Total score</th>
|
|
|
781 <th>Query cover</th>
|
|
|
782 <th>E value</th>
|
|
|
783 <th>Ident</th>
|
|
|
784 <th>Accession</th>
|
|
|
785 </tr>
|
|
|
786 <tr>
|
|
|
787 <td><div><a href="#hit1"
|
|
|
788 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
|
|
|
789 id="description1">
|
|
|
790 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
|
|
|
791 </a></div></td>
|
|
|
792 <td>37.4</td>
|
|
|
793 <td>37.4</td>
|
|
|
794 <td>100%</td>
|
|
|
795 <td>7.011e-08</td>
|
|
|
796 <td>100%</td>
|
|
|
797 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a></td>
|
|
|
798 </tr>
|
|
|
799 </table>
|
|
|
800
|
|
|
801 </div></div>
|
|
|
802 </section>
|
|
|
803
|
|
|
804
|
|
|
805
|
|
|
806 <section class=alignments>
|
|
|
807 <h2>Alignments</h2>
|
|
|
808
|
|
|
809 <div class=grey><div class=white>
|
|
|
810 <div class=alignment id=hit1>
|
|
|
811
|
|
|
812 <div class=linkheader>
|
|
|
813 <div class=right><a href="#description1">Descriptions</a></div>
|
|
|
814 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
815 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=graph&log$=nuclalign">Graphics</a>
|
|
|
816 </div>
|
|
|
817
|
|
|
818 <div class=title>
|
|
|
819 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
|
|
|
820 <p class=titleinfo>
|
|
|
821 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a>
|
|
|
822 <span class=b>Length:</span> 323
|
|
|
823 <span class=b>Number of Matches:</span> 1
|
|
|
824 </p>
|
|
|
825 </div>
|
|
|
826
|
|
|
827
|
|
|
828 <div class=hotspot>
|
|
|
829 <p class=range>
|
|
|
830 <span class=range>Range 1: 200 to 219</span>
|
|
|
831 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign&from=200&to=219">GenBank</a>
|
|
|
832 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=graph&log$=nuclalign&from=200&to=219">Graphics</a>
|
|
|
833 </p>
|
|
|
834
|
|
|
835 <table class=hotspotstable>
|
|
|
836 <tr>
|
|
|
837 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
838 </tr>
|
|
|
839 <tr>
|
|
|
840 <td>37.4 bits(40)</td>
|
|
|
841 <td>0.0</td>
|
|
|
842 <td>20/20(100%)</td>
|
|
|
843 <td>0/20(0%)</td>
|
|
|
844 <td>Plus/Plus</td>
|
|
|
845 </tr>
|
|
|
846 </table>
|
|
|
847
|
|
|
848 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
|
|
|
849 ||||||||||||||||||||
|
|
|
850 Subject 200 AGCGCGCAAACTAGGATAAA 219</pre>
|
|
|
851 </div>
|
|
|
852
|
|
|
853 </div>
|
|
|
854
|
|
|
855 </div></div>
|
|
|
856 </section>
|
|
|
857 </section>
|
|
|
858
|
|
|
859 <section class=match id=match4>
|
|
|
860
|
|
|
861 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
862
|
|
|
863 <section class=header>
|
|
|
864
|
|
|
865 <table class=headerdata>
|
|
|
866 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
867 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
868 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
869 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
870 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
871 </table>
|
|
|
872
|
|
|
873 </section>
|
|
|
874
|
|
|
875 <section>
|
|
|
876 <h2>No Hits</h2>
|
|
|
877 <div class=grey>
|
|
|
878 <table class=headerdata>
|
|
|
879 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
880 </table>
|
|
|
881 </div>
|
|
|
882 </section>
|
|
|
883 </section>
|
|
|
884
|
|
|
885 <section class=match id=match5>
|
|
|
886
|
|
|
887 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
888
|
|
|
889 <section class=header>
|
|
|
890
|
|
|
891 <table class=headerdata>
|
|
|
892 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
893 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
894 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
895 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
896 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
897 </table>
|
|
|
898
|
|
|
899 </section>
|
|
|
900
|
|
|
901 <section>
|
|
|
902 <h2>No Hits</h2>
|
|
|
903 <div class=grey>
|
|
|
904 <table class=headerdata>
|
|
|
905 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
906 </table>
|
|
|
907 </div>
|
|
|
908 </section>
|
|
|
909 </section>
|
|
|
910
|
|
|
911 <section class=match id=match6>
|
|
|
912
|
|
|
913 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
914
|
|
|
915 <section class=header>
|
|
|
916
|
|
|
917 <table class=headerdata>
|
|
|
918 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
919 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
920 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
921 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
922 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
923 </table>
|
|
|
924
|
|
|
925 </section>
|
|
|
926
|
|
|
927
|
|
|
928 <section class=graphics>
|
|
|
929 <h2>Graphic Summary</h2>
|
|
|
930
|
|
|
931 <div class=grey>
|
|
|
932 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
933
|
|
|
934 <div class=defline id=defline6>
|
|
|
935 Mouse-over to show defline and scores, click to show alignments
|
|
|
936 </div>
|
|
|
937
|
|
|
938 <div class=graphic>
|
|
|
939 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
940 <div class=legend><div class=graphicrow>
|
|
|
941 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
942 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
943 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
944 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
945 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
946 </div></div>
|
|
|
947 <div style="clear: left"></div>
|
|
|
948
|
|
|
949 <div class=tablewrapper>
|
|
|
950
|
|
|
951 <div class=scale>
|
|
|
952 <div>query:</div>
|
|
|
953 <div class=graphicrow>
|
|
|
954 <div>
|
|
|
955 <div class=graphicitem style="width: 10.0%">
|
|
|
956 <div>2</div>
|
|
|
957 </div>
|
|
|
958 <div class=graphicitem style="width: 10.0%">
|
|
|
959 <div>4</div>
|
|
|
960 </div>
|
|
|
961 <div class=graphicitem style="width: 10.0%">
|
|
|
962 <div>6</div>
|
|
|
963 </div>
|
|
|
964 <div class=graphicitem style="width: 10.0%">
|
|
|
965 <div>8</div>
|
|
|
966 </div>
|
|
|
967 <div class=graphicitem style="width: 10.0%">
|
|
|
968 <div>10</div>
|
|
|
969 </div>
|
|
|
970 <div class=graphicitem style="width: 10.0%">
|
|
|
971 <div>12</div>
|
|
|
972 </div>
|
|
|
973 <div class=graphicitem style="width: 10.0%">
|
|
|
974 <div>14</div>
|
|
|
975 </div>
|
|
|
976 <div class=graphicitem style="width: 10.0%">
|
|
|
977 <div>16</div>
|
|
|
978 </div>
|
|
|
979 <div class=graphicitem style="width: 10.0%">
|
|
|
980 <div>18</div>
|
|
|
981 </div>
|
|
|
982 <div class=graphicitem style="width: 10.0%">
|
|
|
983 <div>20</div>
|
|
|
984 </div>
|
|
|
985 </div>
|
|
|
986 </div>
|
|
|
987 <div style="clear: left"></div>
|
|
|
988 </div>
|
|
|
989
|
|
|
990 <a class=matchresult
|
|
|
991 href="#hit1"
|
|
|
992 onmouseover='document.getElementById("defline6").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
|
|
|
993 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
994 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
|
|
|
995 <div class="matchrow graphicrow">
|
|
|
996 <div class="matchitem graphicitem"
|
|
|
997 style="background-color: black; width: 100.0%"></div>
|
|
|
998 </div>
|
|
|
999 </a>
|
|
|
1000
|
|
|
1001 </div>
|
|
|
1002 </div>
|
|
|
1003 </div>
|
|
|
1004 </section>
|
|
|
1005
|
|
|
1006
|
|
|
1007
|
|
|
1008 <section class=descriptions>
|
|
|
1009 <h2>Descriptions</h2>
|
|
|
1010
|
|
|
1011 <div class=grey><div class=white>
|
|
|
1012 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
1013
|
|
|
1014 <table class=descriptiontable>
|
|
|
1015 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
1016 <tr>
|
|
|
1017 <th>Description</th>
|
|
|
1018 <th>Max score</th>
|
|
|
1019 <th>Total score</th>
|
|
|
1020 <th>Query cover</th>
|
|
|
1021 <th>E value</th>
|
|
|
1022 <th>Ident</th>
|
|
|
1023 <th>Accession</th>
|
|
|
1024 </tr>
|
|
|
1025 <tr>
|
|
|
1026 <td><div><a href="#hit1"
|
|
|
1027 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
|
|
|
1028 id="description1">
|
|
|
1029 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
|
|
|
1030 </a></div></td>
|
|
|
1031 <td>37.4</td>
|
|
|
1032 <td>37.4</td>
|
|
|
1033 <td>100%</td>
|
|
|
1034 <td>7.011e-08</td>
|
|
|
1035 <td>100%</td>
|
|
|
1036 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a></td>
|
|
|
1037 </tr>
|
|
|
1038 </table>
|
|
|
1039
|
|
|
1040 </div></div>
|
|
|
1041 </section>
|
|
|
1042
|
|
|
1043
|
|
|
1044
|
|
|
1045 <section class=alignments>
|
|
|
1046 <h2>Alignments</h2>
|
|
|
1047
|
|
|
1048 <div class=grey><div class=white>
|
|
|
1049 <div class=alignment id=hit1>
|
|
|
1050
|
|
|
1051 <div class=linkheader>
|
|
|
1052 <div class=right><a href="#description1">Descriptions</a></div>
|
|
|
1053 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
1054 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=graph&log$=nuclalign">Graphics</a>
|
|
|
1055 </div>
|
|
|
1056
|
|
|
1057 <div class=title>
|
|
|
1058 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
|
|
|
1059 <p class=titleinfo>
|
|
|
1060 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a>
|
|
|
1061 <span class=b>Length:</span> 2457
|
|
|
1062 <span class=b>Number of Matches:</span> 1
|
|
|
1063 </p>
|
|
|
1064 </div>
|
|
|
1065
|
|
|
1066
|
|
|
1067 <div class=hotspot>
|
|
|
1068 <p class=range>
|
|
|
1069 <span class=range>Range 1: 2119 to 2138</span>
|
|
|
1070 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign&from=2119&to=2138">GenBank</a>
|
|
|
1071 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=graph&log$=nuclalign&from=2119&to=2138">Graphics</a>
|
|
|
1072 </p>
|
|
|
1073
|
|
|
1074 <table class=hotspotstable>
|
|
|
1075 <tr>
|
|
|
1076 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1077 </tr>
|
|
|
1078 <tr>
|
|
|
1079 <td>37.4 bits(40)</td>
|
|
|
1080 <td>0.0</td>
|
|
|
1081 <td>20/20(100%)</td>
|
|
|
1082 <td>0/20(0%)</td>
|
|
|
1083 <td>Plus/Plus</td>
|
|
|
1084 </tr>
|
|
|
1085 </table>
|
|
|
1086
|
|
|
1087 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
|
|
|
1088 ||||||||||||||||||||
|
|
|
1089 Subject 2119 AGCGCGCAAACTAGGATAAA 2138</pre>
|
|
|
1090 </div>
|
|
|
1091
|
|
|
1092 </div>
|
|
|
1093
|
|
|
1094 </div></div>
|
|
|
1095 </section>
|
|
|
1096 </section>
|
|
|
1097
|
|
|
1098 <section class=match id=match7>
|
|
|
1099
|
|
|
1100 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1101
|
|
|
1102 <section class=header>
|
|
|
1103
|
|
|
1104 <table class=headerdata>
|
|
|
1105 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1106 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1107 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1108 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1109 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1110 </table>
|
|
|
1111
|
|
|
1112 </section>
|
|
|
1113
|
|
|
1114 <section>
|
|
|
1115 <h2>No Hits</h2>
|
|
|
1116 <div class=grey>
|
|
|
1117 <table class=headerdata>
|
|
|
1118 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1119 </table>
|
|
|
1120 </div>
|
|
|
1121 </section>
|
|
|
1122 </section>
|
|
|
1123
|
|
|
1124 <section class=match id=match8>
|
|
|
1125
|
|
|
1126 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1127
|
|
|
1128 <section class=header>
|
|
|
1129
|
|
|
1130 <table class=headerdata>
|
|
|
1131 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1132 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1133 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1134 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1135 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1136 </table>
|
|
|
1137
|
|
|
1138 </section>
|
|
|
1139
|
|
|
1140 <section>
|
|
|
1141 <h2>No Hits</h2>
|
|
|
1142 <div class=grey>
|
|
|
1143 <table class=headerdata>
|
|
|
1144 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1145 </table>
|
|
|
1146 </div>
|
|
|
1147 </section>
|
|
|
1148 </section>
|
|
|
1149
|
|
|
1150 <section class=match id=match9>
|
|
|
1151
|
|
|
1152 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1153
|
|
|
1154 <section class=header>
|
|
|
1155
|
|
|
1156 <table class=headerdata>
|
|
|
1157 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1158 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1159 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1160 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1161 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1162 </table>
|
|
|
1163
|
|
|
1164 </section>
|
|
|
1165
|
|
|
1166 <section>
|
|
|
1167 <h2>No Hits</h2>
|
|
|
1168 <div class=grey>
|
|
|
1169 <table class=headerdata>
|
|
|
1170 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1171 </table>
|
|
|
1172 </div>
|
|
|
1173 </section>
|
|
|
1174 </section>
|
|
|
1175
|
|
|
1176 <section class=match id=match10>
|
|
|
1177
|
|
|
1178 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1179
|
|
|
1180 <section class=header>
|
|
|
1181
|
|
|
1182 <table class=headerdata>
|
|
|
1183 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1184 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1185 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1186 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1187 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1188 </table>
|
|
|
1189
|
|
|
1190 </section>
|
|
|
1191
|
|
|
1192 <section>
|
|
|
1193 <h2>No Hits</h2>
|
|
|
1194 <div class=grey>
|
|
|
1195 <table class=headerdata>
|
|
|
1196 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1197 </table>
|
|
|
1198 </div>
|
|
|
1199 </section>
|
|
|
1200 </section>
|
|
|
1201
|
|
|
1202 <section class=match id=match11>
|
|
|
1203
|
|
|
1204 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1205
|
|
|
1206 <section class=header>
|
|
|
1207
|
|
|
1208 <table class=headerdata>
|
|
|
1209 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1210 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1211 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1212 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1213 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1214 </table>
|
|
|
1215
|
|
|
1216 </section>
|
|
|
1217
|
|
|
1218 <section>
|
|
|
1219 <h2>No Hits</h2>
|
|
|
1220 <div class=grey>
|
|
|
1221 <table class=headerdata>
|
|
|
1222 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1223 </table>
|
|
|
1224 </div>
|
|
|
1225 </section>
|
|
|
1226 </section>
|
|
|
1227
|
|
|
1228 <section class=match id=match12>
|
|
|
1229
|
|
|
1230 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1231
|
|
|
1232 <section class=header>
|
|
|
1233
|
|
|
1234 <table class=headerdata>
|
|
|
1235 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1236 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1237 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1238 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1239 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1240 </table>
|
|
|
1241
|
|
|
1242 </section>
|
|
|
1243
|
|
|
1244 <section>
|
|
|
1245 <h2>No Hits</h2>
|
|
|
1246 <div class=grey>
|
|
|
1247 <table class=headerdata>
|
|
|
1248 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1249 </table>
|
|
|
1250 </div>
|
|
|
1251 </section>
|
|
|
1252 </section>
|
|
|
1253
|
|
|
1254 <section class=match id=match13>
|
|
|
1255
|
|
|
1256 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1257
|
|
|
1258 <section class=header>
|
|
|
1259
|
|
|
1260 <table class=headerdata>
|
|
|
1261 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1262 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1263 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1264 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1265 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1266 </table>
|
|
|
1267
|
|
|
1268 </section>
|
|
|
1269
|
|
|
1270 <section>
|
|
|
1271 <h2>No Hits</h2>
|
|
|
1272 <div class=grey>
|
|
|
1273 <table class=headerdata>
|
|
|
1274 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1275 </table>
|
|
|
1276 </div>
|
|
|
1277 </section>
|
|
|
1278 </section>
|
|
|
1279
|
|
|
1280 <section class=match id=match14>
|
|
|
1281
|
|
|
1282 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1283
|
|
|
1284 <section class=header>
|
|
|
1285
|
|
|
1286 <table class=headerdata>
|
|
|
1287 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1288 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1289 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1290 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1291 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1292 </table>
|
|
|
1293
|
|
|
1294 </section>
|
|
|
1295
|
|
|
1296 <section>
|
|
|
1297 <h2>No Hits</h2>
|
|
|
1298 <div class=grey>
|
|
|
1299 <table class=headerdata>
|
|
|
1300 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1301 </table>
|
|
|
1302 </div>
|
|
|
1303 </section>
|
|
|
1304 </section>
|
|
|
1305
|
|
|
1306 <section class=match id=match15>
|
|
|
1307
|
|
|
1308 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1309
|
|
|
1310 <section class=header>
|
|
|
1311
|
|
|
1312 <table class=headerdata>
|
|
|
1313 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1314 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1315 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1316 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1317 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1318 </table>
|
|
|
1319
|
|
|
1320 </section>
|
|
|
1321
|
|
|
1322 <section>
|
|
|
1323 <h2>No Hits</h2>
|
|
|
1324 <div class=grey>
|
|
|
1325 <table class=headerdata>
|
|
|
1326 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1327 </table>
|
|
|
1328 </div>
|
|
|
1329 </section>
|
|
|
1330 </section>
|
|
|
1331
|
|
|
1332 <section class=match id=match16>
|
|
|
1333
|
|
|
1334 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1335
|
|
|
1336 <section class=header>
|
|
|
1337
|
|
|
1338 <table class=headerdata>
|
|
|
1339 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1340 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1341 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1342 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1343 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1344 </table>
|
|
|
1345
|
|
|
1346 </section>
|
|
|
1347
|
|
|
1348 <section>
|
|
|
1349 <h2>No Hits</h2>
|
|
|
1350 <div class=grey>
|
|
|
1351 <table class=headerdata>
|
|
|
1352 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1353 </table>
|
|
|
1354 </div>
|
|
|
1355 </section>
|
|
|
1356 </section>
|
|
|
1357
|
|
|
1358 <section class=match id=match17>
|
|
|
1359
|
|
|
1360 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1361
|
|
|
1362 <section class=header>
|
|
|
1363
|
|
|
1364 <table class=headerdata>
|
|
|
1365 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1366 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1367 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1368 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1369 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1370 </table>
|
|
|
1371
|
|
|
1372 </section>
|
|
|
1373
|
|
|
1374 <section>
|
|
|
1375 <h2>No Hits</h2>
|
|
|
1376 <div class=grey>
|
|
|
1377 <table class=headerdata>
|
|
|
1378 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1379 </table>
|
|
|
1380 </div>
|
|
|
1381 </section>
|
|
|
1382 </section>
|
|
|
1383
|
|
|
1384 <section class=match id=match18>
|
|
|
1385
|
|
|
1386 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1387
|
|
|
1388 <section class=header>
|
|
|
1389
|
|
|
1390 <table class=headerdata>
|
|
|
1391 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1392 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1393 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1394 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1395 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1396 </table>
|
|
|
1397
|
|
|
1398 </section>
|
|
|
1399
|
|
|
1400
|
|
|
1401 <section class=graphics>
|
|
|
1402 <h2>Graphic Summary</h2>
|
|
|
1403
|
|
|
1404 <div class=grey>
|
|
|
1405 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
1406
|
|
|
1407 <div class=defline id=defline18>
|
|
|
1408 Mouse-over to show defline and scores, click to show alignments
|
|
|
1409 </div>
|
|
|
1410
|
|
|
1411 <div class=graphic>
|
|
|
1412 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
1413 <div class=legend><div class=graphicrow>
|
|
|
1414 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
1415 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
1416 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
1417 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
1418 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
1419 </div></div>
|
|
|
1420 <div style="clear: left"></div>
|
|
|
1421
|
|
|
1422 <div class=tablewrapper>
|
|
|
1423
|
|
|
1424 <div class=scale>
|
|
|
1425 <div>query:</div>
|
|
|
1426 <div class=graphicrow>
|
|
|
1427 <div>
|
|
|
1428 <div class=graphicitem style="width: 10.0%">
|
|
|
1429 <div>2</div>
|
|
|
1430 </div>
|
|
|
1431 <div class=graphicitem style="width: 10.0%">
|
|
|
1432 <div>4</div>
|
|
|
1433 </div>
|
|
|
1434 <div class=graphicitem style="width: 10.0%">
|
|
|
1435 <div>6</div>
|
|
|
1436 </div>
|
|
|
1437 <div class=graphicitem style="width: 10.0%">
|
|
|
1438 <div>8</div>
|
|
|
1439 </div>
|
|
|
1440 <div class=graphicitem style="width: 10.0%">
|
|
|
1441 <div>10</div>
|
|
|
1442 </div>
|
|
|
1443 <div class=graphicitem style="width: 10.0%">
|
|
|
1444 <div>12</div>
|
|
|
1445 </div>
|
|
|
1446 <div class=graphicitem style="width: 10.0%">
|
|
|
1447 <div>14</div>
|
|
|
1448 </div>
|
|
|
1449 <div class=graphicitem style="width: 10.0%">
|
|
|
1450 <div>16</div>
|
|
|
1451 </div>
|
|
|
1452 <div class=graphicitem style="width: 10.0%">
|
|
|
1453 <div>18</div>
|
|
|
1454 </div>
|
|
|
1455 <div class=graphicitem style="width: 10.0%">
|
|
|
1456 <div>20</div>
|
|
|
1457 </div>
|
|
|
1458 </div>
|
|
|
1459 </div>
|
|
|
1460 <div style="clear: left"></div>
|
|
|
1461 </div>
|
|
|
1462
|
|
|
1463 <a class=matchresult
|
|
|
1464 href="#hit1"
|
|
|
1465 onmouseover='document.getElementById("defline18").innerHTML="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3\u0027UTR/plant_junction_region.|-9105899556052450000"'
|
|
|
1466 onmouseout='document.getElementById("defline18").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1467 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000">
|
|
|
1468 <div class="matchrow graphicrow">
|
|
|
1469 <div class="matchitem graphicitem"
|
|
|
1470 style="background-color: transparent; width: 15.0%"></div>
|
|
|
1471 <div class="matchitem graphicitem"
|
|
|
1472 style="background-color: black; width: 85.0%"></div>
|
|
|
1473 </div>
|
|
|
1474 </a>
|
|
|
1475
|
|
|
1476 </div>
|
|
|
1477 </div>
|
|
|
1478 </div>
|
|
|
1479 </section>
|
|
|
1480
|
|
|
1481
|
|
|
1482
|
|
|
1483 <section class=descriptions>
|
|
|
1484 <h2>Descriptions</h2>
|
|
|
1485
|
|
|
1486 <div class=grey><div class=white>
|
|
|
1487 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
1488
|
|
|
1489 <table class=descriptiontable>
|
|
|
1490 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
1491 <tr>
|
|
|
1492 <th>Description</th>
|
|
|
1493 <th>Max score</th>
|
|
|
1494 <th>Total score</th>
|
|
|
1495 <th>Query cover</th>
|
|
|
1496 <th>E value</th>
|
|
|
1497 <th>Ident</th>
|
|
|
1498 <th>Accession</th>
|
|
|
1499 </tr>
|
|
|
1500 <tr>
|
|
|
1501 <td><div><a href="#hit1"
|
|
|
1502 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000"
|
|
|
1503 id="description1">
|
|
|
1504 AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000
|
|
|
1505 </a></div></td>
|
|
|
1506 <td>31.9</td>
|
|
|
1507 <td>31.9</td>
|
|
|
1508 <td>85%</td>
|
|
|
1509 <td>2.981e-06</td>
|
|
|
1510 <td>100%</td>
|
|
|
1511 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Subject_2</a></td>
|
|
|
1512 </tr>
|
|
|
1513 </table>
|
|
|
1514
|
|
|
1515 </div></div>
|
|
|
1516 </section>
|
|
|
1517
|
|
|
1518
|
|
|
1519
|
|
|
1520 <section class=alignments>
|
|
|
1521 <h2>Alignments</h2>
|
|
|
1522
|
|
|
1523 <div class=grey><div class=white>
|
|
|
1524 <div class=alignment id=hit1>
|
|
|
1525
|
|
|
1526 <div class=linkheader>
|
|
|
1527 <div class=right><a href="#description1">Descriptions</a></div>
|
|
|
1528 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
1529 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=graph&log$=nuclalign">Graphics</a>
|
|
|
1530 </div>
|
|
|
1531
|
|
|
1532 <div class=title>
|
|
|
1533 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</p>
|
|
|
1534 <p class=titleinfo>
|
|
|
1535 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Subject_2</a>
|
|
|
1536 <span class=b>Length:</span> 1045
|
|
|
1537 <span class=b>Number of Matches:</span> 1
|
|
|
1538 </p>
|
|
|
1539 </div>
|
|
|
1540
|
|
|
1541
|
|
|
1542 <div class=hotspot>
|
|
|
1543 <p class=range>
|
|
|
1544 <span class=range>Range 1: 2 to 18</span>
|
|
|
1545 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign&from=2&to=18">GenBank</a>
|
|
|
1546 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=graph&log$=nuclalign&from=2&to=18">Graphics</a>
|
|
|
1547 </p>
|
|
|
1548
|
|
|
1549 <table class=hotspotstable>
|
|
|
1550 <tr>
|
|
|
1551 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1552 </tr>
|
|
|
1553 <tr>
|
|
|
1554 <td>31.9 bits(34)</td>
|
|
|
1555 <td>0.0</td>
|
|
|
1556 <td>17/17(100%)</td>
|
|
|
1557 <td>0/17(0%)</td>
|
|
|
1558 <td>Plus/Plus</td>
|
|
|
1559 </tr>
|
|
|
1560 </table>
|
|
|
1561
|
|
|
1562 <pre class=alignmentgraphic>Query 4 GCGCGGTGTCATCTATG 20
|
|
|
1563 |||||||||||||||||
|
|
|
1564 Subject 2 GCGCGGTGTCATCTATG 18</pre>
|
|
|
1565 </div>
|
|
|
1566
|
|
|
1567 </div>
|
|
|
1568
|
|
|
1569 </div></div>
|
|
|
1570 </section>
|
|
|
1571 </section>
|
|
|
1572
|
|
|
1573 <section class=match id=match19>
|
|
|
1574
|
|
|
1575 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1576
|
|
|
1577 <section class=header>
|
|
|
1578
|
|
|
1579 <table class=headerdata>
|
|
|
1580 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1581 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1582 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1583 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1584 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1585 </table>
|
|
|
1586
|
|
|
1587 </section>
|
|
|
1588
|
|
|
1589
|
|
|
1590 <section class=graphics>
|
|
|
1591 <h2>Graphic Summary</h2>
|
|
|
1592
|
|
|
1593 <div class=grey>
|
|
|
1594 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
1595
|
|
|
1596 <div class=defline id=defline19>
|
|
|
1597 Mouse-over to show defline and scores, click to show alignments
|
|
|
1598 </div>
|
|
|
1599
|
|
|
1600 <div class=graphic>
|
|
|
1601 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
1602 <div class=legend><div class=graphicrow>
|
|
|
1603 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
1604 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
1605 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
1606 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
1607 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
1608 </div></div>
|
|
|
1609 <div style="clear: left"></div>
|
|
|
1610
|
|
|
1611 <div class=tablewrapper>
|
|
|
1612
|
|
|
1613 <div class=scale>
|
|
|
1614 <div>query:</div>
|
|
|
1615 <div class=graphicrow>
|
|
|
1616 <div>
|
|
|
1617 <div class=graphicitem style="width: 10.0%">
|
|
|
1618 <div>2</div>
|
|
|
1619 </div>
|
|
|
1620 <div class=graphicitem style="width: 10.0%">
|
|
|
1621 <div>4</div>
|
|
|
1622 </div>
|
|
|
1623 <div class=graphicitem style="width: 10.0%">
|
|
|
1624 <div>6</div>
|
|
|
1625 </div>
|
|
|
1626 <div class=graphicitem style="width: 10.0%">
|
|
|
1627 <div>8</div>
|
|
|
1628 </div>
|
|
|
1629 <div class=graphicitem style="width: 10.0%">
|
|
|
1630 <div>10</div>
|
|
|
1631 </div>
|
|
|
1632 <div class=graphicitem style="width: 10.0%">
|
|
|
1633 <div>12</div>
|
|
|
1634 </div>
|
|
|
1635 <div class=graphicitem style="width: 10.0%">
|
|
|
1636 <div>14</div>
|
|
|
1637 </div>
|
|
|
1638 <div class=graphicitem style="width: 10.0%">
|
|
|
1639 <div>16</div>
|
|
|
1640 </div>
|
|
|
1641 <div class=graphicitem style="width: 10.0%">
|
|
|
1642 <div>18</div>
|
|
|
1643 </div>
|
|
|
1644 <div class=graphicitem style="width: 10.0%">
|
|
|
1645 <div>20</div>
|
|
|
1646 </div>
|
|
|
1647 </div>
|
|
|
1648 </div>
|
|
|
1649 <div style="clear: left"></div>
|
|
|
1650 </div>
|
|
|
1651
|
|
|
1652 <a class=matchresult
|
|
|
1653 href="#hit1"
|
|
|
1654 onmouseover='document.getElementById("defline19").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
|
|
|
1655 onmouseout='document.getElementById("defline19").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1656 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
|
|
|
1657 <div class="matchrow graphicrow">
|
|
|
1658 <div class="matchitem graphicitem"
|
|
|
1659 style="background-color: black; width: 100.0%"></div>
|
|
|
1660 </div>
|
|
|
1661 </a>
|
|
|
1662
|
|
|
1663 </div>
|
|
|
1664 </div>
|
|
|
1665 </div>
|
|
|
1666 </section>
|
|
|
1667
|
|
|
1668
|
|
|
1669
|
|
|
1670 <section class=descriptions>
|
|
|
1671 <h2>Descriptions</h2>
|
|
|
1672
|
|
|
1673 <div class=grey><div class=white>
|
|
|
1674 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
1675
|
|
|
1676 <table class=descriptiontable>
|
|
|
1677 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
1678 <tr>
|
|
|
1679 <th>Description</th>
|
|
|
1680 <th>Max score</th>
|
|
|
1681 <th>Total score</th>
|
|
|
1682 <th>Query cover</th>
|
|
|
1683 <th>E value</th>
|
|
|
1684 <th>Ident</th>
|
|
|
1685 <th>Accession</th>
|
|
|
1686 </tr>
|
|
|
1687 <tr>
|
|
|
1688 <td><div><a href="#hit1"
|
|
|
1689 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
|
|
|
1690 id="description1">
|
|
|
1691 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
|
|
|
1692 </a></div></td>
|
|
|
1693 <td>37.4</td>
|
|
|
1694 <td>37.4</td>
|
|
|
1695 <td>100%</td>
|
|
|
1696 <td>7.011e-08</td>
|
|
|
1697 <td>100%</td>
|
|
|
1698 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a></td>
|
|
|
1699 </tr>
|
|
|
1700 </table>
|
|
|
1701
|
|
|
1702 </div></div>
|
|
|
1703 </section>
|
|
|
1704
|
|
|
1705
|
|
|
1706
|
|
|
1707 <section class=alignments>
|
|
|
1708 <h2>Alignments</h2>
|
|
|
1709
|
|
|
1710 <div class=grey><div class=white>
|
|
|
1711 <div class=alignment id=hit1>
|
|
|
1712
|
|
|
1713 <div class=linkheader>
|
|
|
1714 <div class=right><a href="#description1">Descriptions</a></div>
|
|
|
1715 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
1716 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=graph&log$=nuclalign">Graphics</a>
|
|
|
1717 </div>
|
|
|
1718
|
|
|
1719 <div class=title>
|
|
|
1720 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
|
|
|
1721 <p class=titleinfo>
|
|
|
1722 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a>
|
|
|
1723 <span class=b>Length:</span> 323
|
|
|
1724 <span class=b>Number of Matches:</span> 1
|
|
|
1725 </p>
|
|
|
1726 </div>
|
|
|
1727
|
|
|
1728
|
|
|
1729 <div class=hotspot>
|
|
|
1730 <p class=range>
|
|
|
1731 <span class=range>Range 1: 224 to 243</span>
|
|
|
1732 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign&from=224&to=243">GenBank</a>
|
|
|
1733 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=graph&log$=nuclalign&from=224&to=243">Graphics</a>
|
|
|
1734 </p>
|
|
|
1735
|
|
|
1736 <table class=hotspotstable>
|
|
|
1737 <tr>
|
|
|
1738 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1739 </tr>
|
|
|
1740 <tr>
|
|
|
1741 <td>37.4 bits(40)</td>
|
|
|
1742 <td>0.0</td>
|
|
|
1743 <td>20/20(100%)</td>
|
|
|
1744 <td>0/20(0%)</td>
|
|
|
1745 <td>Plus/Plus</td>
|
|
|
1746 </tr>
|
|
|
1747 </table>
|
|
|
1748
|
|
|
1749 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
|
|
|
1750 ||||||||||||||||||||
|
|
|
1751 Subject 224 CGCGCGCGGTGTCATCTATG 243</pre>
|
|
|
1752 </div>
|
|
|
1753
|
|
|
1754 </div>
|
|
|
1755
|
|
|
1756 </div></div>
|
|
|
1757 </section>
|
|
|
1758 </section>
|
|
|
1759
|
|
|
1760 <section class=match id=match20>
|
|
|
1761
|
|
|
1762 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1763
|
|
|
1764 <section class=header>
|
|
|
1765
|
|
|
1766 <table class=headerdata>
|
|
|
1767 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1768 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1769 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1770 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1771 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1772 </table>
|
|
|
1773
|
|
|
1774 </section>
|
|
|
1775
|
|
|
1776 <section>
|
|
|
1777 <h2>No Hits</h2>
|
|
|
1778 <div class=grey>
|
|
|
1779 <table class=headerdata>
|
|
|
1780 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1781 </table>
|
|
|
1782 </div>
|
|
|
1783 </section>
|
|
|
1784 </section>
|
|
|
1785
|
|
|
1786 <section class=match id=match21>
|
|
|
1787
|
|
|
1788 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1789
|
|
|
1790 <section class=header>
|
|
|
1791
|
|
|
1792 <table class=headerdata>
|
|
|
1793 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1794 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1795 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1796 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1797 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1798 </table>
|
|
|
1799
|
|
|
1800 </section>
|
|
|
1801
|
|
|
1802 <section>
|
|
|
1803 <h2>No Hits</h2>
|
|
|
1804 <div class=grey>
|
|
|
1805 <table class=headerdata>
|
|
|
1806 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1807 </table>
|
|
|
1808 </div>
|
|
|
1809 </section>
|
|
|
1810 </section>
|
|
|
1811
|
|
|
1812 <section class=match id=match22>
|
|
|
1813
|
|
|
1814 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1815
|
|
|
1816 <section class=header>
|
|
|
1817
|
|
|
1818 <table class=headerdata>
|
|
|
1819 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1820 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1821 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1822 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1823 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
1824 </table>
|
|
|
1825
|
|
|
1826 </section>
|
|
|
1827
|
|
|
1828
|
|
|
1829 <section class=graphics>
|
|
|
1830 <h2>Graphic Summary</h2>
|
|
|
1831
|
|
|
1832 <div class=grey>
|
|
|
1833 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
1834
|
|
|
1835 <div class=defline id=defline22>
|
|
|
1836 Mouse-over to show defline and scores, click to show alignments
|
|
|
1837 </div>
|
|
|
1838
|
|
|
1839 <div class=graphic>
|
|
|
1840 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
1841 <div class=legend><div class=graphicrow>
|
|
|
1842 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
1843 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
1844 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
1845 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
1846 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
1847 </div></div>
|
|
|
1848 <div style="clear: left"></div>
|
|
|
1849
|
|
|
1850 <div class=tablewrapper>
|
|
|
1851
|
|
|
1852 <div class=scale>
|
|
|
1853 <div>query:</div>
|
|
|
1854 <div class=graphicrow>
|
|
|
1855 <div>
|
|
|
1856 <div class=graphicitem style="width: 10.0%">
|
|
|
1857 <div>2</div>
|
|
|
1858 </div>
|
|
|
1859 <div class=graphicitem style="width: 10.0%">
|
|
|
1860 <div>4</div>
|
|
|
1861 </div>
|
|
|
1862 <div class=graphicitem style="width: 10.0%">
|
|
|
1863 <div>6</div>
|
|
|
1864 </div>
|
|
|
1865 <div class=graphicitem style="width: 10.0%">
|
|
|
1866 <div>8</div>
|
|
|
1867 </div>
|
|
|
1868 <div class=graphicitem style="width: 10.0%">
|
|
|
1869 <div>10</div>
|
|
|
1870 </div>
|
|
|
1871 <div class=graphicitem style="width: 10.0%">
|
|
|
1872 <div>12</div>
|
|
|
1873 </div>
|
|
|
1874 <div class=graphicitem style="width: 10.0%">
|
|
|
1875 <div>14</div>
|
|
|
1876 </div>
|
|
|
1877 <div class=graphicitem style="width: 10.0%">
|
|
|
1878 <div>16</div>
|
|
|
1879 </div>
|
|
|
1880 <div class=graphicitem style="width: 10.0%">
|
|
|
1881 <div>18</div>
|
|
|
1882 </div>
|
|
|
1883 <div class=graphicitem style="width: 10.0%">
|
|
|
1884 <div>20</div>
|
|
|
1885 </div>
|
|
|
1886 </div>
|
|
|
1887 </div>
|
|
|
1888 <div style="clear: left"></div>
|
|
|
1889 </div>
|
|
|
1890
|
|
|
1891 <a class=matchresult
|
|
|
1892 href="#hit1"
|
|
|
1893 onmouseover='document.getElementById("defline22").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
|
|
|
1894 onmouseout='document.getElementById("defline22").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1895 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
|
|
|
1896 <div class="matchrow graphicrow">
|
|
|
1897 <div class="matchitem graphicitem"
|
|
|
1898 style="background-color: black; width: 100.0%"></div>
|
|
|
1899 </div>
|
|
|
1900 </a>
|
|
|
1901
|
|
|
1902 </div>
|
|
|
1903 </div>
|
|
|
1904 </div>
|
|
|
1905 </section>
|
|
|
1906
|
|
|
1907
|
|
|
1908
|
|
|
1909 <section class=descriptions>
|
|
|
1910 <h2>Descriptions</h2>
|
|
|
1911
|
|
|
1912 <div class=grey><div class=white>
|
|
|
1913 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
1914
|
|
|
1915 <table class=descriptiontable>
|
|
|
1916 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
1917 <tr>
|
|
|
1918 <th>Description</th>
|
|
|
1919 <th>Max score</th>
|
|
|
1920 <th>Total score</th>
|
|
|
1921 <th>Query cover</th>
|
|
|
1922 <th>E value</th>
|
|
|
1923 <th>Ident</th>
|
|
|
1924 <th>Accession</th>
|
|
|
1925 </tr>
|
|
|
1926 <tr>
|
|
|
1927 <td><div><a href="#hit1"
|
|
|
1928 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
|
|
|
1929 id="description1">
|
|
|
1930 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
|
|
|
1931 </a></div></td>
|
|
|
1932 <td>37.4</td>
|
|
|
1933 <td>37.4</td>
|
|
|
1934 <td>100%</td>
|
|
|
1935 <td>7.011e-08</td>
|
|
|
1936 <td>100%</td>
|
|
|
1937 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a></td>
|
|
|
1938 </tr>
|
|
|
1939 </table>
|
|
|
1940
|
|
|
1941 </div></div>
|
|
|
1942 </section>
|
|
|
1943
|
|
|
1944
|
|
|
1945
|
|
|
1946 <section class=alignments>
|
|
|
1947 <h2>Alignments</h2>
|
|
|
1948
|
|
|
1949 <div class=grey><div class=white>
|
|
|
1950 <div class=alignment id=hit1>
|
|
|
1951
|
|
|
1952 <div class=linkheader>
|
|
|
1953 <div class=right><a href="#description1">Descriptions</a></div>
|
|
|
1954 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
1955 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=graph&log$=nuclalign">Graphics</a>
|
|
|
1956 </div>
|
|
|
1957
|
|
|
1958 <div class=title>
|
|
|
1959 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
|
|
|
1960 <p class=titleinfo>
|
|
|
1961 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a>
|
|
|
1962 <span class=b>Length:</span> 2457
|
|
|
1963 <span class=b>Number of Matches:</span> 1
|
|
|
1964 </p>
|
|
|
1965 </div>
|
|
|
1966
|
|
|
1967
|
|
|
1968 <div class=hotspot>
|
|
|
1969 <p class=range>
|
|
|
1970 <span class=range>Range 1: 2143 to 2162</span>
|
|
|
1971 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign&from=2143&to=2162">GenBank</a>
|
|
|
1972 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=graph&log$=nuclalign&from=2143&to=2162">Graphics</a>
|
|
|
1973 </p>
|
|
|
1974
|
|
|
1975 <table class=hotspotstable>
|
|
|
1976 <tr>
|
|
|
1977 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1978 </tr>
|
|
|
1979 <tr>
|
|
|
1980 <td>37.4 bits(40)</td>
|
|
|
1981 <td>0.0</td>
|
|
|
1982 <td>20/20(100%)</td>
|
|
|
1983 <td>0/20(0%)</td>
|
|
|
1984 <td>Plus/Plus</td>
|
|
|
1985 </tr>
|
|
|
1986 </table>
|
|
|
1987
|
|
|
1988 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
|
|
|
1989 ||||||||||||||||||||
|
|
|
1990 Subject 2143 CGCGCGCGGTGTCATCTATG 2162</pre>
|
|
|
1991 </div>
|
|
|
1992
|
|
|
1993 </div>
|
|
|
1994
|
|
|
1995 </div></div>
|
|
|
1996 </section>
|
|
|
1997 </section>
|
|
|
1998
|
|
|
1999 <section class=match id=match23>
|
|
|
2000
|
|
|
2001 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2002
|
|
|
2003 <section class=header>
|
|
|
2004
|
|
|
2005 <table class=headerdata>
|
|
|
2006 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2007 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2008 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2009 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2010 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2011 </table>
|
|
|
2012
|
|
|
2013 </section>
|
|
|
2014
|
|
|
2015 <section>
|
|
|
2016 <h2>No Hits</h2>
|
|
|
2017 <div class=grey>
|
|
|
2018 <table class=headerdata>
|
|
|
2019 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2020 </table>
|
|
|
2021 </div>
|
|
|
2022 </section>
|
|
|
2023 </section>
|
|
|
2024
|
|
|
2025 <section class=match id=match24>
|
|
|
2026
|
|
|
2027 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2028
|
|
|
2029 <section class=header>
|
|
|
2030
|
|
|
2031 <table class=headerdata>
|
|
|
2032 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2033 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2034 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2035 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2036 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2037 </table>
|
|
|
2038
|
|
|
2039 </section>
|
|
|
2040
|
|
|
2041 <section>
|
|
|
2042 <h2>No Hits</h2>
|
|
|
2043 <div class=grey>
|
|
|
2044 <table class=headerdata>
|
|
|
2045 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2046 </table>
|
|
|
2047 </div>
|
|
|
2048 </section>
|
|
|
2049 </section>
|
|
|
2050
|
|
|
2051 <section class=match id=match25>
|
|
|
2052
|
|
|
2053 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2054
|
|
|
2055 <section class=header>
|
|
|
2056
|
|
|
2057 <table class=headerdata>
|
|
|
2058 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2059 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2060 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2061 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2062 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2063 </table>
|
|
|
2064
|
|
|
2065 </section>
|
|
|
2066
|
|
|
2067 <section>
|
|
|
2068 <h2>No Hits</h2>
|
|
|
2069 <div class=grey>
|
|
|
2070 <table class=headerdata>
|
|
|
2071 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2072 </table>
|
|
|
2073 </div>
|
|
|
2074 </section>
|
|
|
2075 </section>
|
|
|
2076
|
|
|
2077 <section class=match id=match26>
|
|
|
2078
|
|
|
2079 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2080
|
|
|
2081 <section class=header>
|
|
|
2082
|
|
|
2083 <table class=headerdata>
|
|
|
2084 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2085 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2086 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2087 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2088 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2089 </table>
|
|
|
2090
|
|
|
2091 </section>
|
|
|
2092
|
|
|
2093 <section>
|
|
|
2094 <h2>No Hits</h2>
|
|
|
2095 <div class=grey>
|
|
|
2096 <table class=headerdata>
|
|
|
2097 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2098 </table>
|
|
|
2099 </div>
|
|
|
2100 </section>
|
|
|
2101 </section>
|
|
|
2102
|
|
|
2103 <section class=match id=match27>
|
|
|
2104
|
|
|
2105 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2106
|
|
|
2107 <section class=header>
|
|
|
2108
|
|
|
2109 <table class=headerdata>
|
|
|
2110 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2111 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2112 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2113 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2114 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2115 </table>
|
|
|
2116
|
|
|
2117 </section>
|
|
|
2118
|
|
|
2119 <section>
|
|
|
2120 <h2>No Hits</h2>
|
|
|
2121 <div class=grey>
|
|
|
2122 <table class=headerdata>
|
|
|
2123 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2124 </table>
|
|
|
2125 </div>
|
|
|
2126 </section>
|
|
|
2127 </section>
|
|
|
2128
|
|
|
2129 <section class=match id=match28>
|
|
|
2130
|
|
|
2131 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2132
|
|
|
2133 <section class=header>
|
|
|
2134
|
|
|
2135 <table class=headerdata>
|
|
|
2136 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2137 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2138 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2139 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2140 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2141 </table>
|
|
|
2142
|
|
|
2143 </section>
|
|
|
2144
|
|
|
2145 <section>
|
|
|
2146 <h2>No Hits</h2>
|
|
|
2147 <div class=grey>
|
|
|
2148 <table class=headerdata>
|
|
|
2149 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2150 </table>
|
|
|
2151 </div>
|
|
|
2152 </section>
|
|
|
2153 </section>
|
|
|
2154
|
|
|
2155 <section class=match id=match29>
|
|
|
2156
|
|
|
2157 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2158
|
|
|
2159 <section class=header>
|
|
|
2160
|
|
|
2161 <table class=headerdata>
|
|
|
2162 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2163 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2164 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2165 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2166 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2167 </table>
|
|
|
2168
|
|
|
2169 </section>
|
|
|
2170
|
|
|
2171 <section>
|
|
|
2172 <h2>No Hits</h2>
|
|
|
2173 <div class=grey>
|
|
|
2174 <table class=headerdata>
|
|
|
2175 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2176 </table>
|
|
|
2177 </div>
|
|
|
2178 </section>
|
|
|
2179 </section>
|
|
|
2180
|
|
|
2181 <section class=match id=match30>
|
|
|
2182
|
|
|
2183 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2184
|
|
|
2185 <section class=header>
|
|
|
2186
|
|
|
2187 <table class=headerdata>
|
|
|
2188 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2189 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2190 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2191 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2192 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2193 </table>
|
|
|
2194
|
|
|
2195 </section>
|
|
|
2196
|
|
|
2197 <section>
|
|
|
2198 <h2>No Hits</h2>
|
|
|
2199 <div class=grey>
|
|
|
2200 <table class=headerdata>
|
|
|
2201 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2202 </table>
|
|
|
2203 </div>
|
|
|
2204 </section>
|
|
|
2205 </section>
|
|
|
2206
|
|
|
2207 <section class=match id=match31>
|
|
|
2208
|
|
|
2209 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2210
|
|
|
2211 <section class=header>
|
|
|
2212
|
|
|
2213 <table class=headerdata>
|
|
|
2214 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2215 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2216 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2217 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2218 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2219 </table>
|
|
|
2220
|
|
|
2221 </section>
|
|
|
2222
|
|
|
2223 <section>
|
|
|
2224 <h2>No Hits</h2>
|
|
|
2225 <div class=grey>
|
|
|
2226 <table class=headerdata>
|
|
|
2227 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2228 </table>
|
|
|
2229 </div>
|
|
|
2230 </section>
|
|
|
2231 </section>
|
|
|
2232
|
|
|
2233 <section class=match id=match32>
|
|
|
2234
|
|
|
2235 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
2236
|
|
|
2237 <section class=header>
|
|
|
2238
|
|
|
2239 <table class=headerdata>
|
|
|
2240 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2241 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2242 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2243 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2244 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2245 </table>
|
|
|
2246
|
|
|
2247 </section>
|
|
|
2248
|
|
|
2249 <section>
|
|
|
2250 <h2>No Hits</h2>
|
|
|
2251 <div class=grey>
|
|
|
2252 <table class=headerdata>
|
|
|
2253 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2254 </table>
|
|
|
2255 </div>
|
|
|
2256 </section>
|
|
|
2257 </section>
|
|
|
2258
|
|
|
2259 <section class=match id=match33>
|
|
|
2260
|
|
|
2261 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2262
|
|
|
2263 <section class=header>
|
|
|
2264
|
|
|
2265 <table class=headerdata>
|
|
|
2266 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2267 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2268 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2269 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2270 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2271 </table>
|
|
|
2272
|
|
|
2273 </section>
|
|
|
2274
|
|
|
2275 <section>
|
|
|
2276 <h2>No Hits</h2>
|
|
|
2277 <div class=grey>
|
|
|
2278 <table class=headerdata>
|
|
|
2279 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2280 </table>
|
|
|
2281 </div>
|
|
|
2282 </section>
|
|
|
2283 </section>
|
|
|
2284
|
|
|
2285 <section class=match id=match34>
|
|
|
2286
|
|
|
2287 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2288
|
|
|
2289 <section class=header>
|
|
|
2290
|
|
|
2291 <table class=headerdata>
|
|
|
2292 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2293 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2294 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2295 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2296 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2297 </table>
|
|
|
2298
|
|
|
2299 </section>
|
|
|
2300
|
|
|
2301 <section>
|
|
|
2302 <h2>No Hits</h2>
|
|
|
2303 <div class=grey>
|
|
|
2304 <table class=headerdata>
|
|
|
2305 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2306 </table>
|
|
|
2307 </div>
|
|
|
2308 </section>
|
|
|
2309 </section>
|
|
|
2310
|
|
|
2311 <section class=match id=match35>
|
|
|
2312
|
|
|
2313 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2314
|
|
|
2315 <section class=header>
|
|
|
2316
|
|
|
2317 <table class=headerdata>
|
|
|
2318 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2319 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2320 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2321 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2322 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2323 </table>
|
|
|
2324
|
|
|
2325 </section>
|
|
|
2326
|
|
|
2327 <section>
|
|
|
2328 <h2>No Hits</h2>
|
|
|
2329 <div class=grey>
|
|
|
2330 <table class=headerdata>
|
|
|
2331 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2332 </table>
|
|
|
2333 </div>
|
|
|
2334 </section>
|
|
|
2335 </section>
|
|
|
2336
|
|
|
2337 <section class=match id=match36>
|
|
|
2338
|
|
|
2339 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2340
|
|
|
2341 <section class=header>
|
|
|
2342
|
|
|
2343 <table class=headerdata>
|
|
|
2344 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2345 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2346 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2347 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2348 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2349 </table>
|
|
|
2350
|
|
|
2351 </section>
|
|
|
2352
|
|
|
2353 <section>
|
|
|
2354 <h2>No Hits</h2>
|
|
|
2355 <div class=grey>
|
|
|
2356 <table class=headerdata>
|
|
|
2357 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2358 </table>
|
|
|
2359 </div>
|
|
|
2360 </section>
|
|
|
2361 </section>
|
|
|
2362
|
|
|
2363 <section class=match id=match37>
|
|
|
2364
|
|
|
2365 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2366
|
|
|
2367 <section class=header>
|
|
|
2368
|
|
|
2369 <table class=headerdata>
|
|
|
2370 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2371 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2372 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2373 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2374 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2375 </table>
|
|
|
2376
|
|
|
2377 </section>
|
|
|
2378
|
|
|
2379 <section>
|
|
|
2380 <h2>No Hits</h2>
|
|
|
2381 <div class=grey>
|
|
|
2382 <table class=headerdata>
|
|
|
2383 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2384 </table>
|
|
|
2385 </div>
|
|
|
2386 </section>
|
|
|
2387 </section>
|
|
|
2388
|
|
|
2389 <section class=match id=match38>
|
|
|
2390
|
|
|
2391 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2392
|
|
|
2393 <section class=header>
|
|
|
2394
|
|
|
2395 <table class=headerdata>
|
|
|
2396 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2397 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2398 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2399 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2400 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2401 </table>
|
|
|
2402
|
|
|
2403 </section>
|
|
|
2404
|
|
|
2405 <section>
|
|
|
2406 <h2>No Hits</h2>
|
|
|
2407 <div class=grey>
|
|
|
2408 <table class=headerdata>
|
|
|
2409 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2410 </table>
|
|
|
2411 </div>
|
|
|
2412 </section>
|
|
|
2413 </section>
|
|
|
2414
|
|
|
2415 <section class=match id=match39>
|
|
|
2416
|
|
|
2417 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2418
|
|
|
2419 <section class=header>
|
|
|
2420
|
|
|
2421 <table class=headerdata>
|
|
|
2422 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2423 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2424 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2425 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2426 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2427 </table>
|
|
|
2428
|
|
|
2429 </section>
|
|
|
2430
|
|
|
2431 <section>
|
|
|
2432 <h2>No Hits</h2>
|
|
|
2433 <div class=grey>
|
|
|
2434 <table class=headerdata>
|
|
|
2435 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2436 </table>
|
|
|
2437 </div>
|
|
|
2438 </section>
|
|
|
2439 </section>
|
|
|
2440
|
|
|
2441 <section class=match id=match40>
|
|
|
2442
|
|
|
2443 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
2444
|
|
|
2445 <section class=header>
|
|
|
2446
|
|
|
2447 <table class=headerdata>
|
|
|
2448 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2449 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2450 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2451 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2452 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2453 </table>
|
|
|
2454
|
|
|
2455 </section>
|
|
|
2456
|
|
|
2457 <section>
|
|
|
2458 <h2>No Hits</h2>
|
|
|
2459 <div class=grey>
|
|
|
2460 <table class=headerdata>
|
|
|
2461 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2462 </table>
|
|
|
2463 </div>
|
|
|
2464 </section>
|
|
|
2465 </section>
|
|
|
2466
|
|
|
2467 <section class=match id=match41>
|
|
|
2468
|
|
|
2469 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2470
|
|
|
2471 <section class=header>
|
|
|
2472
|
|
|
2473 <table class=headerdata>
|
|
|
2474 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2475 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2476 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2477 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2478 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2479 </table>
|
|
|
2480
|
|
|
2481 </section>
|
|
|
2482
|
|
|
2483 <section>
|
|
|
2484 <h2>No Hits</h2>
|
|
|
2485 <div class=grey>
|
|
|
2486 <table class=headerdata>
|
|
|
2487 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2488 </table>
|
|
|
2489 </div>
|
|
|
2490 </section>
|
|
|
2491 </section>
|
|
|
2492
|
|
|
2493 <section class=match id=match42>
|
|
|
2494
|
|
|
2495 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2496
|
|
|
2497 <section class=header>
|
|
|
2498
|
|
|
2499 <table class=headerdata>
|
|
|
2500 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2501 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2502 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2503 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2504 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2505 </table>
|
|
|
2506
|
|
|
2507 </section>
|
|
|
2508
|
|
|
2509 <section>
|
|
|
2510 <h2>No Hits</h2>
|
|
|
2511 <div class=grey>
|
|
|
2512 <table class=headerdata>
|
|
|
2513 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2514 </table>
|
|
|
2515 </div>
|
|
|
2516 </section>
|
|
|
2517 </section>
|
|
|
2518
|
|
|
2519 <section class=match id=match43>
|
|
|
2520
|
|
|
2521 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2522
|
|
|
2523 <section class=header>
|
|
|
2524
|
|
|
2525 <table class=headerdata>
|
|
|
2526 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2527 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2528 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2529 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2530 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2531 </table>
|
|
|
2532
|
|
|
2533 </section>
|
|
|
2534
|
|
|
2535 <section>
|
|
|
2536 <h2>No Hits</h2>
|
|
|
2537 <div class=grey>
|
|
|
2538 <table class=headerdata>
|
|
|
2539 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2540 </table>
|
|
|
2541 </div>
|
|
|
2542 </section>
|
|
|
2543 </section>
|
|
|
2544
|
|
|
2545 <section class=match id=match44>
|
|
|
2546
|
|
|
2547 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2548
|
|
|
2549 <section class=header>
|
|
|
2550
|
|
|
2551 <table class=headerdata>
|
|
|
2552 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2553 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2554 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2555 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2556 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2557 </table>
|
|
|
2558
|
|
|
2559 </section>
|
|
|
2560
|
|
|
2561 <section>
|
|
|
2562 <h2>No Hits</h2>
|
|
|
2563 <div class=grey>
|
|
|
2564 <table class=headerdata>
|
|
|
2565 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2566 </table>
|
|
|
2567 </div>
|
|
|
2568 </section>
|
|
|
2569 </section>
|
|
|
2570
|
|
|
2571 <section class=match id=match45>
|
|
|
2572
|
|
|
2573 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2574
|
|
|
2575 <section class=header>
|
|
|
2576
|
|
|
2577 <table class=headerdata>
|
|
|
2578 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2579 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2580 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2581 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2582 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2583 </table>
|
|
|
2584
|
|
|
2585 </section>
|
|
|
2586
|
|
|
2587 <section>
|
|
|
2588 <h2>No Hits</h2>
|
|
|
2589 <div class=grey>
|
|
|
2590 <table class=headerdata>
|
|
|
2591 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2592 </table>
|
|
|
2593 </div>
|
|
|
2594 </section>
|
|
|
2595 </section>
|
|
|
2596
|
|
|
2597 <section class=match id=match46>
|
|
|
2598
|
|
|
2599 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2600
|
|
|
2601 <section class=header>
|
|
|
2602
|
|
|
2603 <table class=headerdata>
|
|
|
2604 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2605 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2606 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2607 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2608 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2609 </table>
|
|
|
2610
|
|
|
2611 </section>
|
|
|
2612
|
|
|
2613 <section>
|
|
|
2614 <h2>No Hits</h2>
|
|
|
2615 <div class=grey>
|
|
|
2616 <table class=headerdata>
|
|
|
2617 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
2618 </table>
|
|
|
2619 </div>
|
|
|
2620 </section>
|
|
|
2621 </section>
|
|
|
2622
|
|
|
2623 <section class=match id=match47>
|
|
|
2624
|
|
|
2625 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2626
|
|
|
2627 <section class=header>
|
|
|
2628
|
|
|
2629 <table class=headerdata>
|
|
|
2630 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2631 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2632 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2633 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2634 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2635 </table>
|
|
|
2636
|
|
|
2637 </section>
|
|
|
2638
|
|
|
2639
|
|
|
2640 <section class=graphics>
|
|
|
2641 <h2>Graphic Summary</h2>
|
|
|
2642
|
|
|
2643 <div class=grey>
|
|
|
2644 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
2645
|
|
|
2646 <div class=defline id=defline47>
|
|
|
2647 Mouse-over to show defline and scores, click to show alignments
|
|
|
2648 </div>
|
|
|
2649
|
|
|
2650 <div class=graphic>
|
|
|
2651 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
2652 <div class=legend><div class=graphicrow>
|
|
|
2653 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
2654 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
2655 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
2656 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
2657 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
2658 </div></div>
|
|
|
2659 <div style="clear: left"></div>
|
|
|
2660
|
|
|
2661 <div class=tablewrapper>
|
|
|
2662
|
|
|
2663 <div class=scale>
|
|
|
2664 <div>query:</div>
|
|
|
2665 <div class=graphicrow>
|
|
|
2666 <div>
|
|
|
2667 <div class=graphicitem style="width: 12.0%">
|
|
|
2668 <div>3</div>
|
|
|
2669 </div>
|
|
|
2670 <div class=graphicitem style="width: 12.0%">
|
|
|
2671 <div>6</div>
|
|
|
2672 </div>
|
|
|
2673 <div class=graphicitem style="width: 12.0%">
|
|
|
2674 <div>9</div>
|
|
|
2675 </div>
|
|
|
2676 <div class=graphicitem style="width: 12.0%">
|
|
|
2677 <div>12</div>
|
|
|
2678 </div>
|
|
|
2679 <div class=graphicitem style="width: 12.0%">
|
|
|
2680 <div>15</div>
|
|
|
2681 </div>
|
|
|
2682 <div class=graphicitem style="width: 12.0%">
|
|
|
2683 <div>18</div>
|
|
|
2684 </div>
|
|
|
2685 <div class=graphicitem style="width: 12.0%">
|
|
|
2686 <div>21</div>
|
|
|
2687 </div>
|
|
|
2688 <div class=graphicitem style="width: 12.0%">
|
|
|
2689 <div>24</div>
|
|
|
2690 </div>
|
|
|
2691 <div class=graphicitem style="width: 4.0%">
|
|
|
2692 <div>25</div>
|
|
|
2693 </div>
|
|
|
2694 </div>
|
|
|
2695 </div>
|
|
|
2696 <div style="clear: left"></div>
|
|
|
2697 </div>
|
|
|
2698
|
|
|
2699 <a class=matchresult
|
|
|
2700 href="#hit1"
|
|
|
2701 onmouseover='document.getElementById("defline47").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
|
|
|
2702 onmouseout='document.getElementById("defline47").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
2703 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
|
|
|
2704 <div class="matchrow graphicrow">
|
|
|
2705 <div class="matchitem graphicitem"
|
|
|
2706 style="background-color: black; width: 100.0%"></div>
|
|
|
2707 </div>
|
|
|
2708 </a>
|
|
|
2709
|
|
|
2710 </div>
|
|
|
2711 </div>
|
|
|
2712 </div>
|
|
|
2713 </section>
|
|
|
2714
|
|
|
2715
|
|
|
2716
|
|
|
2717 <section class=descriptions>
|
|
|
2718 <h2>Descriptions</h2>
|
|
|
2719
|
|
|
2720 <div class=grey><div class=white>
|
|
|
2721 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
2722
|
|
|
2723 <table class=descriptiontable>
|
|
|
2724 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
2725 <tr>
|
|
|
2726 <th>Description</th>
|
|
|
2727 <th>Max score</th>
|
|
|
2728 <th>Total score</th>
|
|
|
2729 <th>Query cover</th>
|
|
|
2730 <th>E value</th>
|
|
|
2731 <th>Ident</th>
|
|
|
2732 <th>Accession</th>
|
|
|
2733 </tr>
|
|
|
2734 <tr>
|
|
|
2735 <td><div><a href="#hit1"
|
|
|
2736 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
|
|
|
2737 id="description1">
|
|
|
2738 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
|
|
|
2739 </a></div></td>
|
|
|
2740 <td>37.4</td>
|
|
|
2741 <td>37.4</td>
|
|
|
2742 <td>100%</td>
|
|
|
2743 <td>9.338e-08</td>
|
|
|
2744 <td>92%</td>
|
|
|
2745 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a></td>
|
|
|
2746 </tr>
|
|
|
2747 </table>
|
|
|
2748
|
|
|
2749 </div></div>
|
|
|
2750 </section>
|
|
|
2751
|
|
|
2752
|
|
|
2753
|
|
|
2754 <section class=alignments>
|
|
|
2755 <h2>Alignments</h2>
|
|
|
2756
|
|
|
2757 <div class=grey><div class=white>
|
|
|
2758 <div class=alignment id=hit1>
|
|
|
2759
|
|
|
2760 <div class=linkheader>
|
|
|
2761 <div class=right><a href="#description1">Descriptions</a></div>
|
|
|
2762 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
2763 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=graph&log$=nuclalign">Graphics</a>
|
|
|
2764 </div>
|
|
|
2765
|
|
|
2766 <div class=title>
|
|
|
2767 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
|
|
|
2768 <p class=titleinfo>
|
|
|
2769 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a>
|
|
|
2770 <span class=b>Length:</span> 4180
|
|
|
2771 <span class=b>Number of Matches:</span> 1
|
|
|
2772 </p>
|
|
|
2773 </div>
|
|
|
2774
|
|
|
2775
|
|
|
2776 <div class=hotspot>
|
|
|
2777 <p class=range>
|
|
|
2778 <span class=range>Range 1: 1541 to 1565</span>
|
|
|
2779 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign&from=1541&to=1565">GenBank</a>
|
|
|
2780 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=graph&log$=nuclalign&from=1541&to=1565">Graphics</a>
|
|
|
2781 </p>
|
|
|
2782
|
|
|
2783 <table class=hotspotstable>
|
|
|
2784 <tr>
|
|
|
2785 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
2786 </tr>
|
|
|
2787 <tr>
|
|
|
2788 <td>37.4 bits(40)</td>
|
|
|
2789 <td>0.0</td>
|
|
|
2790 <td>23/25(92%)</td>
|
|
|
2791 <td>0/25(0%)</td>
|
|
|
2792 <td>Plus/Plus</td>
|
|
|
2793 </tr>
|
|
|
2794 </table>
|
|
|
2795
|
|
|
2796 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCACAGC 25
|
|
|
2797 |||||||||||||| ||||||| ||
|
|
|
2798 Subject 1541 ACATGAACAGCGCCCTGACCACCGC 1565</pre>
|
|
|
2799 </div>
|
|
|
2800
|
|
|
2801 </div>
|
|
|
2802
|
|
|
2803 </div></div>
|
|
|
2804 </section>
|
|
|
2805 </section>
|
|
|
2806
|
|
|
2807 <section class=match id=match48>
|
|
|
2808
|
|
|
2809 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
2810
|
|
|
2811 <section class=header>
|
|
|
2812
|
|
|
2813 <table class=headerdata>
|
|
|
2814 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2815 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
2816 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
2817 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
2818 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
2819 </table>
|
|
|
2820
|
|
|
2821 </section>
|
|
|
2822
|
|
|
2823
|
|
|
2824 <section class=graphics>
|
|
|
2825 <h2>Graphic Summary</h2>
|
|
|
2826
|
|
|
2827 <div class=grey>
|
|
|
2828 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
2829
|
|
|
2830 <div class=defline id=defline48>
|
|
|
2831 Mouse-over to show defline and scores, click to show alignments
|
|
|
2832 </div>
|
|
|
2833
|
|
|
2834 <div class=graphic>
|
|
|
2835 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
2836 <div class=legend><div class=graphicrow>
|
|
|
2837 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
2838 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
2839 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
2840 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
2841 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
2842 </div></div>
|
|
|
2843 <div style="clear: left"></div>
|
|
|
2844
|
|
|
2845 <div class=tablewrapper>
|
|
|
2846
|
|
|
2847 <div class=scale>
|
|
|
2848 <div>query:</div>
|
|
|
2849 <div class=graphicrow>
|
|
|
2850 <div>
|
|
|
2851 <div class=graphicitem style="width: 12.0%">
|
|
|
2852 <div>3</div>
|
|
|
2853 </div>
|
|
|
2854 <div class=graphicitem style="width: 12.0%">
|
|
|
2855 <div>6</div>
|
|
|
2856 </div>
|
|
|
2857 <div class=graphicitem style="width: 12.0%">
|
|
|
2858 <div>9</div>
|
|
|
2859 </div>
|
|
|
2860 <div class=graphicitem style="width: 12.0%">
|
|
|
2861 <div>12</div>
|
|
|
2862 </div>
|
|
|
2863 <div class=graphicitem style="width: 12.0%">
|
|
|
2864 <div>15</div>
|
|
|
2865 </div>
|
|
|
2866 <div class=graphicitem style="width: 12.0%">
|
|
|
2867 <div>18</div>
|
|
|
2868 </div>
|
|
|
2869 <div class=graphicitem style="width: 12.0%">
|
|
|
2870 <div>21</div>
|
|
|
2871 </div>
|
|
|
2872 <div class=graphicitem style="width: 12.0%">
|
|
|
2873 <div>24</div>
|
|
|
2874 </div>
|
|
|
2875 <div class=graphicitem style="width: 4.0%">
|
|
|
2876 <div>25</div>
|
|
|
2877 </div>
|
|
|
2878 </div>
|
|
|
2879 </div>
|
|
|
2880 <div style="clear: left"></div>
|
|
|
2881 </div>
|
|
|
2882
|
|
|
2883 <a class=matchresult
|
|
|
2884 href="#hit1"
|
|
|
2885 onmouseover='document.getElementById("defline48").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
|
|
|
2886 onmouseout='document.getElementById("defline48").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
2887 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
|
|
|
2888 <div class="matchrow graphicrow">
|
|
|
2889 <div class="matchitem graphicitem"
|
|
|
2890 style="background-color: black; width: 100.0%"></div>
|
|
|
2891 </div>
|
|
|
2892 </a>
|
|
|
2893
|
|
|
2894 </div>
|
|
|
2895 </div>
|
|
|
2896 </div>
|
|
|
2897 </section>
|
|
|
2898
|
|
|
2899
|
|
|
2900
|
|
|
2901 <section class=descriptions>
|
|
|
2902 <h2>Descriptions</h2>
|
|
|
2903
|
|
|
2904 <div class=grey><div class=white>
|
|
|
2905 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
2906
|
|
|
2907 <table class=descriptiontable>
|
|
|
2908 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
2909 <tr>
|
|
|
2910 <th>Description</th>
|
|
|
2911 <th>Max score</th>
|
|
|
2912 <th>Total score</th>
|
|
|
2913 <th>Query cover</th>
|
|
|
2914 <th>E value</th>
|
|
|
2915 <th>Ident</th>
|
|
|
2916 <th>Accession</th>
|
|
|
2917 </tr>
|
|
|
2918 <tr>
|
|
|
2919 <td><div><a href="#hit1"
|
|
|
2920 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
|
|
|
2921 id="description1">
|
|
|
2922 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
|
|
|
2923 </a></div></td>
|
|
|
2924 <td>37.4</td>
|
|
|
2925 <td>37.4</td>
|
|
|
2926 <td>100%</td>
|
|
|
2927 <td>9.338e-08</td>
|
|
|
2928 <td>92%</td>
|
|
|
2929 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a></td>
|
|
|
2930 </tr>
|
|
|
2931 </table>
|
|
|
2932
|
|
|
2933 </div></div>
|
|
|
2934 </section>
|
|
|
2935
|
|
|
2936
|
|
|
2937
|
|
|
2938 <section class=alignments>
|
|
|
2939 <h2>Alignments</h2>
|
|
|
2940
|
|
|
2941 <div class=grey><div class=white>
|
|
|
2942 <div class=alignment id=hit1>
|
|
|
2943
|
|
|
2944 <div class=linkheader>
|
|
|
2945 <div class=right><a href="#description1">Descriptions</a></div>
|
|
|
2946 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
2947 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=graph&log$=nuclalign">Graphics</a>
|
|
|
2948 </div>
|
|
|
2949
|
|
|
2950 <div class=title>
|
|
|
2951 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
|
|
|
2952 <p class=titleinfo>
|
|
|
2953 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a>
|
|
|
2954 <span class=b>Length:</span> 4983
|
|
|
2955 <span class=b>Number of Matches:</span> 1
|
|
|
2956 </p>
|
|
|
2957 </div>
|
|
|
2958
|
|
|
2959
|
|
|
2960 <div class=hotspot>
|
|
|
2961 <p class=range>
|
|
|
2962 <span class=range>Range 1: 2344 to 2368</span>
|
|
|
2963 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign&from=2344&to=2368">GenBank</a>
|
|
|
2964 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=graph&log$=nuclalign&from=2344&to=2368">Graphics</a>
|
|
|
2965 </p>
|
|
|
2966
|
|
|
2967 <table class=hotspotstable>
|
|
|
2968 <tr>
|
|
|
2969 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
2970 </tr>
|
|
|
2971 <tr>
|
|
|
2972 <td>37.4 bits(40)</td>
|
|
|
2973 <td>0.0</td>
|
|
|
2974 <td>23/25(92%)</td>
|
|
|
2975 <td>0/25(0%)</td>
|
|
|
2976 <td>Plus/Plus</td>
|
|
|
2977 </tr>
|
|
|
2978 </table>
|
|
|
2979
|
|
|
2980 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCACAGC 25
|
|
|
2981 |||||||||||||| ||||||| ||
|
|
|
2982 Subject 2344 ACATGAACAGCGCCCTGACCACCGC 2368</pre>
|
|
|
2983 </div>
|
|
|
2984
|
|
|
2985 </div>
|
|
|
2986
|
|
|
2987 </div></div>
|
|
|
2988 </section>
|
|
|
2989 </section>
|
|
|
2990
|
|
|
2991 <section class=match id=match49>
|
|
|
2992
|
|
|
2993 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
2994
|
|
|
2995 <section class=header>
|
|
|
2996
|
|
|
2997 <table class=headerdata>
|
|
|
2998 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
2999 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3000 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3001 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3002 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3003 </table>
|
|
|
3004
|
|
|
3005 </section>
|
|
|
3006
|
|
|
3007 <section>
|
|
|
3008 <h2>No Hits</h2>
|
|
|
3009 <div class=grey>
|
|
|
3010 <table class=headerdata>
|
|
|
3011 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
3012 </table>
|
|
|
3013 </div>
|
|
|
3014 </section>
|
|
|
3015 </section>
|
|
|
3016
|
|
|
3017 <section class=match id=match50>
|
|
|
3018
|
|
|
3019 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
3020
|
|
|
3021 <section class=header>
|
|
|
3022
|
|
|
3023 <table class=headerdata>
|
|
|
3024 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3025 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3026 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3027 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3028 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3029 </table>
|
|
|
3030
|
|
|
3031 </section>
|
|
|
3032
|
|
|
3033 <section>
|
|
|
3034 <h2>No Hits</h2>
|
|
|
3035 <div class=grey>
|
|
|
3036 <table class=headerdata>
|
|
|
3037 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
3038 </table>
|
|
|
3039 </div>
|
|
|
3040 </section>
|
|
|
3041 </section>
|
|
|
3042
|
|
|
3043 <section class=match id=match51>
|
|
|
3044
|
|
|
3045 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
3046
|
|
|
3047 <section class=header>
|
|
|
3048
|
|
|
3049 <table class=headerdata>
|
|
|
3050 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3051 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3052 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3053 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3054 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3055 </table>
|
|
|
3056
|
|
|
3057 </section>
|
|
|
3058
|
|
|
3059 <section>
|
|
|
3060 <h2>No Hits</h2>
|
|
|
3061 <div class=grey>
|
|
|
3062 <table class=headerdata>
|
|
|
3063 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
3064 </table>
|
|
|
3065 </div>
|
|
|
3066 </section>
|
|
|
3067 </section>
|
|
|
3068
|
|
|
3069 <section class=match id=match52>
|
|
|
3070
|
|
|
3071 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
3072
|
|
|
3073 <section class=header>
|
|
|
3074
|
|
|
3075 <table class=headerdata>
|
|
|
3076 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3077 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3078 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3079 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3080 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3081 </table>
|
|
|
3082
|
|
|
3083 </section>
|
|
|
3084
|
|
|
3085 <section>
|
|
|
3086 <h2>No Hits</h2>
|
|
|
3087 <div class=grey>
|
|
|
3088 <table class=headerdata>
|
|
|
3089 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
3090 </table>
|
|
|
3091 </div>
|
|
|
3092 </section>
|
|
|
3093 </section>
|
|
|
3094
|
|
|
3095 <section class=match id=match53>
|
|
|
3096
|
|
|
3097 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
3098
|
|
|
3099 <section class=header>
|
|
|
3100
|
|
|
3101 <table class=headerdata>
|
|
|
3102 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3103 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3104 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3105 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3106 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3107 </table>
|
|
|
3108
|
|
|
3109 </section>
|
|
|
3110
|
|
|
3111 <section>
|
|
|
3112 <h2>No Hits</h2>
|
|
|
3113 <div class=grey>
|
|
|
3114 <table class=headerdata>
|
|
|
3115 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
3116 </table>
|
|
|
3117 </div>
|
|
|
3118 </section>
|
|
|
3119 </section>
|
|
|
3120
|
|
|
3121 <section class=match id=match54>
|
|
|
3122
|
|
|
3123 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
3124
|
|
|
3125 <section class=header>
|
|
|
3126
|
|
|
3127 <table class=headerdata>
|
|
|
3128 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3129 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3130 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3131 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3132 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3133 </table>
|
|
|
3134
|
|
|
3135 </section>
|
|
|
3136
|
|
|
3137 <section>
|
|
|
3138 <h2>No Hits</h2>
|
|
|
3139 <div class=grey>
|
|
|
3140 <table class=headerdata>
|
|
|
3141 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
3142 </table>
|
|
|
3143 </div>
|
|
|
3144 </section>
|
|
|
3145 </section>
|
|
|
3146
|
|
|
3147 <section class=match id=match55>
|
|
|
3148
|
|
|
3149 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
3150
|
|
|
3151 <section class=header>
|
|
|
3152
|
|
|
3153 <table class=headerdata>
|
|
|
3154 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3155 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3156 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3157 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3158 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3159 </table>
|
|
|
3160
|
|
|
3161 </section>
|
|
|
3162
|
|
|
3163
|
|
|
3164 <section class=graphics>
|
|
|
3165 <h2>Graphic Summary</h2>
|
|
|
3166
|
|
|
3167 <div class=grey>
|
|
|
3168 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
3169
|
|
|
3170 <div class=defline id=defline55>
|
|
|
3171 Mouse-over to show defline and scores, click to show alignments
|
|
|
3172 </div>
|
|
|
3173
|
|
|
3174 <div class=graphic>
|
|
|
3175 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
3176 <div class=legend><div class=graphicrow>
|
|
|
3177 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
3178 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
3179 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
3180 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
3181 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
3182 </div></div>
|
|
|
3183 <div style="clear: left"></div>
|
|
|
3184
|
|
|
3185 <div class=tablewrapper>
|
|
|
3186
|
|
|
3187 <div class=scale>
|
|
|
3188 <div>query:</div>
|
|
|
3189 <div class=graphicrow>
|
|
|
3190 <div>
|
|
|
3191 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3192 <div>8</div>
|
|
|
3193 </div>
|
|
|
3194 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3195 <div>16</div>
|
|
|
3196 </div>
|
|
|
3197 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3198 <div>24</div>
|
|
|
3199 </div>
|
|
|
3200 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3201 <div>32</div>
|
|
|
3202 </div>
|
|
|
3203 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3204 <div>40</div>
|
|
|
3205 </div>
|
|
|
3206 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3207 <div>48</div>
|
|
|
3208 </div>
|
|
|
3209 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3210 <div>56</div>
|
|
|
3211 </div>
|
|
|
3212 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3213 <div>64</div>
|
|
|
3214 </div>
|
|
|
3215 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3216 <div>72</div>
|
|
|
3217 </div>
|
|
|
3218 <div class=graphicitem style="width: 2.7027027027027026%">
|
|
|
3219 <div> </div>
|
|
|
3220 <div class=lastlabel>74</div>
|
|
|
3221 </div>
|
|
|
3222 </div>
|
|
|
3223 </div>
|
|
|
3224 <div style="clear: left"></div>
|
|
|
3225 </div>
|
|
|
3226
|
|
|
3227 <a class=matchresult
|
|
|
3228 href="#hit1"
|
|
|
3229 onmouseover='document.getElementById("defline55").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
|
|
|
3230 onmouseout='document.getElementById("defline55").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
3231 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
|
|
|
3232 <div class="matchrow graphicrow">
|
|
|
3233 <div class="matchitem graphicitem"
|
|
|
3234 style="background-color: green; width: 100.0%"></div>
|
|
|
3235 </div>
|
|
|
3236 </a>
|
|
|
3237
|
|
|
3238 </div>
|
|
|
3239 </div>
|
|
|
3240 </div>
|
|
|
3241 </section>
|
|
|
3242
|
|
|
3243
|
|
|
3244
|
|
|
3245 <section class=descriptions>
|
|
|
3246 <h2>Descriptions</h2>
|
|
|
3247
|
|
|
3248 <div class=grey><div class=white>
|
|
|
3249 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
3250
|
|
|
3251 <table class=descriptiontable>
|
|
|
3252 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
3253 <tr>
|
|
|
3254 <th>Description</th>
|
|
|
3255 <th>Max score</th>
|
|
|
3256 <th>Total score</th>
|
|
|
3257 <th>Query cover</th>
|
|
|
3258 <th>E value</th>
|
|
|
3259 <th>Ident</th>
|
|
|
3260 <th>Accession</th>
|
|
|
3261 </tr>
|
|
|
3262 <tr>
|
|
|
3263 <td><div><a href="#hit1"
|
|
|
3264 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
|
|
|
3265 id="description1">
|
|
|
3266 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
|
|
|
3267 </a></div></td>
|
|
|
3268 <td>89.7</td>
|
|
|
3269 <td>89.7</td>
|
|
|
3270 <td>100%</td>
|
|
|
3271 <td>6.629e-23</td>
|
|
|
3272 <td>86%</td>
|
|
|
3273 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a></td>
|
|
|
3274 </tr>
|
|
|
3275 </table>
|
|
|
3276
|
|
|
3277 </div></div>
|
|
|
3278 </section>
|
|
|
3279
|
|
|
3280
|
|
|
3281
|
|
|
3282 <section class=alignments>
|
|
|
3283 <h2>Alignments</h2>
|
|
|
3284
|
|
|
3285 <div class=grey><div class=white>
|
|
|
3286 <div class=alignment id=hit1>
|
|
|
3287
|
|
|
3288 <div class=linkheader>
|
|
|
3289 <div class=right><a href="#description1">Descriptions</a></div>
|
|
|
3290 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
3291 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=graph&log$=nuclalign">Graphics</a>
|
|
|
3292 </div>
|
|
|
3293
|
|
|
3294 <div class=title>
|
|
|
3295 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
|
|
|
3296 <p class=titleinfo>
|
|
|
3297 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a>
|
|
|
3298 <span class=b>Length:</span> 4180
|
|
|
3299 <span class=b>Number of Matches:</span> 1
|
|
|
3300 </p>
|
|
|
3301 </div>
|
|
|
3302
|
|
|
3303
|
|
|
3304 <div class=hotspot>
|
|
|
3305 <p class=range>
|
|
|
3306 <span class=range>Range 1: 1516 to 1589</span>
|
|
|
3307 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign&from=1516&to=1589">GenBank</a>
|
|
|
3308 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=graph&log$=nuclalign&from=1516&to=1589">Graphics</a>
|
|
|
3309 </p>
|
|
|
3310
|
|
|
3311 <table class=hotspotstable>
|
|
|
3312 <tr>
|
|
|
3313 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
3314 </tr>
|
|
|
3315 <tr>
|
|
|
3316 <td>89.7 bits(98)</td>
|
|
|
3317 <td>0.0</td>
|
|
|
3318 <td>64/74(86%)</td>
|
|
|
3319 <td>0/74(0%)</td>
|
|
|
3320 <td>Plus/Plus</td>
|
|
|
3321 </tr>
|
|
|
3322 </table>
|
|
|
3323
|
|
|
3324 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA 74
|
|
|
3325 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||
|
|
|
3326 Subject 1516 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA 1589</pre>
|
|
|
3327 </div>
|
|
|
3328
|
|
|
3329 </div>
|
|
|
3330
|
|
|
3331 </div></div>
|
|
|
3332 </section>
|
|
|
3333 </section>
|
|
|
3334
|
|
|
3335 <section class=match id=match56>
|
|
|
3336
|
|
|
3337 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
3338
|
|
|
3339 <section class=header>
|
|
|
3340
|
|
|
3341 <table class=headerdata>
|
|
|
3342 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
3343 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
3344 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
3345 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
3346 <tr><td class=param>Database:</td><td></td></tr>
|
|
|
3347 </table>
|
|
|
3348
|
|
|
3349 </section>
|
|
|
3350
|
|
|
3351
|
|
|
3352 <section class=graphics>
|
|
|
3353 <h2>Graphic Summary</h2>
|
|
|
3354
|
|
|
3355 <div class=grey>
|
|
|
3356 <h3 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h3>
|
|
|
3357
|
|
|
3358 <div class=defline id=defline56>
|
|
|
3359 Mouse-over to show defline and scores, click to show alignments
|
|
|
3360 </div>
|
|
|
3361
|
|
|
3362 <div class=graphic>
|
|
|
3363 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
3364 <div class=legend><div class=graphicrow>
|
|
|
3365 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
3366 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
3367 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
3368 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
3369 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
3370 </div></div>
|
|
|
3371 <div style="clear: left"></div>
|
|
|
3372
|
|
|
3373 <div class=tablewrapper>
|
|
|
3374
|
|
|
3375 <div class=scale>
|
|
|
3376 <div>query:</div>
|
|
|
3377 <div class=graphicrow>
|
|
|
3378 <div>
|
|
|
3379 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3380 <div>8</div>
|
|
|
3381 </div>
|
|
|
3382 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3383 <div>16</div>
|
|
|
3384 </div>
|
|
|
3385 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3386 <div>24</div>
|
|
|
3387 </div>
|
|
|
3388 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3389 <div>32</div>
|
|
|
3390 </div>
|
|
|
3391 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3392 <div>40</div>
|
|
|
3393 </div>
|
|
|
3394 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3395 <div>48</div>
|
|
|
3396 </div>
|
|
|
3397 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3398 <div>56</div>
|
|
|
3399 </div>
|
|
|
3400 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3401 <div>64</div>
|
|
|
3402 </div>
|
|
|
3403 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
3404 <div>72</div>
|
|
|
3405 </div>
|
|
|
3406 <div class=graphicitem style="width: 2.7027027027027026%">
|
|
|
3407 <div> </div>
|
|
|
3408 <div class=lastlabel>74</div>
|
|
|
3409 </div>
|
|
|
3410 </div>
|
|
|
3411 </div>
|
|
|
3412 <div style="clear: left"></div>
|
|
|
3413 </div>
|
|
|
3414
|
|
|
3415 <a class=matchresult
|
|
|
3416 href="#hit1"
|
|
|
3417 onmouseover='document.getElementById("defline56").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
|
|
|
3418 onmouseout='document.getElementById("defline56").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
3419 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
|
|
|
3420 <div class="matchrow graphicrow">
|
|
|
3421 <div class="matchitem graphicitem"
|
|
|
3422 style="background-color: green; width: 100.0%"></div>
|
|
|
3423 </div>
|
|
|
3424 </a>
|
|
|
3425
|
|
|
3426 </div>
|
|
|
3427 </div>
|
|
|
3428 </div>
|
|
|
3429 </section>
|
|
|
3430
|
|
|
3431
|
|
|
3432
|
|
|
3433 <section class=descriptions>
|
|
|
3434 <h2>Descriptions</h2>
|
|
|
3435
|
|
|
3436 <div class=grey><div class=white>
|
|
|
3437 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
3438
|
|
|
3439 <table class=descriptiontable>
|
|
|
3440 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
3441 <tr>
|
|
|
3442 <th>Description</th>
|
|
|
3443 <th>Max score</th>
|
|
|
3444 <th>Total score</th>
|
|
|
3445 <th>Query cover</th>
|
|
|
3446 <th>E value</th>
|
|
|
3447 <th>Ident</th>
|
|
|
3448 <th>Accession</th>
|
|
|
3449 </tr>
|
|
|
3450 <tr>
|
|
|
3451 <td><div><a href="#hit1"
|
|
|
3452 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
|
|
|
3453 id="description1">
|
|
|
3454 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
|
|
|
3455 </a></div></td>
|
|
|
3456 <td>89.7</td>
|
|
|
3457 <td>89.7</td>
|
|
|
3458 <td>100%</td>
|
|
|
3459 <td>6.629e-23</td>
|
|
|
3460 <td>86%</td>
|
|
|
3461 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a></td>
|
|
|
3462 </tr>
|
|
|
3463 </table>
|
|
|
3464
|
|
|
3465 </div></div>
|
|
|
3466 </section>
|
|
|
3467
|
|
|
3468
|
|
|
3469
|
|
|
3470 <section class=alignments>
|
|
|
3471 <h2>Alignments</h2>
|
|
|
3472
|
|
|
3473 <div class=grey><div class=white>
|
|
|
3474 <div class=alignment id=hit1>
|
|
|
3475
|
|
|
3476 <div class=linkheader>
|
|
|
3477 <div class=right><a href="#description1">Descriptions</a></div>
|
|
|
3478 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
3479 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=graph&log$=nuclalign">Graphics</a>
|
|
|
3480 </div>
|
|
|
3481
|
|
|
3482 <div class=title>
|
|
|
3483 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
|
|
|
3484 <p class=titleinfo>
|
|
|
3485 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a>
|
|
|
3486 <span class=b>Length:</span> 4983
|
|
|
3487 <span class=b>Number of Matches:</span> 1
|
|
|
3488 </p>
|
|
|
3489 </div>
|
|
|
3490
|
|
|
3491
|
|
|
3492 <div class=hotspot>
|
|
|
3493 <p class=range>
|
|
|
3494 <span class=range>Range 1: 2319 to 2392</span>
|
|
|
3495 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign&from=2319&to=2392">GenBank</a>
|
|
|
3496 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=graph&log$=nuclalign&from=2319&to=2392">Graphics</a>
|
|
|
3497 </p>
|
|
|
3498
|
|
|
3499 <table class=hotspotstable>
|
|
|
3500 <tr>
|
|
|
3501 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
3502 </tr>
|
|
|
3503 <tr>
|
|
|
3504 <td>89.7 bits(98)</td>
|
|
|
3505 <td>0.0</td>
|
|
|
3506 <td>64/74(86%)</td>
|
|
|
3507 <td>0/74(0%)</td>
|
|
|
3508 <td>Plus/Plus</td>
|
|
|
3509 </tr>
|
|
|
3510 </table>
|
|
|
3511
|
|
|
3512 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA 74
|
|
|
3513 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||
|
|
|
3514 Subject 2319 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA 2392</pre>
|
|
|
3515 </div>
|
|
|
3516
|
|
|
3517 </div>
|
|
|
3518
|
|
|
3519 </div></div>
|
|
|
3520 </section>
|
|
|
3521 </section>
|
|
|
3522
|
|
|
3523 </div>
|
|
|
3524
|
|
|
3525 <footer>
|
|
|
3526 This page was generated by <a href="...">blast2html</a>.
|
|
|
3527 </footer>
|
|
|
3528 </body>
|
|
|
3529 </html>
|
|
|
3530
|
