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2 <html>
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3 <head>
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4 <meta charset="UTF-8">
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5 <meta name=generator content="blast2html; see ...">
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6
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7 <title>Blast output</title>
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8
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9 <style>
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10 body {
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11 color: #333333;
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12 font-family: Arial,Sans-Serif;
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13 }
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19 .right {
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20 float: right;
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21 }
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22
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23 /* Galaxy with html sanitization enabled strips the header of this html page. If so, show the user a warning.*/
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24 #strip_html_warning {
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25 display: none;
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26 }
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27
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28 #content {
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29 margin: 0 2em;
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30 padding: 0.5em;
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31 border: 1px solid #888888;
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32 background-color: #d3dff5;
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33 }
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35 h1, h2, h3, h4, h5, h6 {
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149 width: 50%;
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152
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153 /* For small widths we give the graphic 100% */
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154 @media (max-width: 72.5em) {
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155 div.tablewrapper {
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156 width: 100%;
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272 color: #222222;
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274 }
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284 }
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333 padding: .1em 1em;
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346 }
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348 footer {
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350 color: #cccccc;
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354 footer :link {
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355 color: #5588cc;
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356 }
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357
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358 </style>
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359
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360 <script type="text/javascript">
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361 function toggle_visibility(id) {
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362 var e = document.getElementById(id);
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363 if(e.style.display != 'block')
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364 e.style.display = 'block';
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365 else
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366 e.style.display = 'none';
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367 }
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368 </script>
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369
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370 </head>
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371
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372
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373 <body>
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374
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375 <div id="strip_html_warning">
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376 <!-- This div should be hidden by the header css block. Galaxy
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377 strips all css, breaking this page but making this warning
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378 visible. This warning contains some ugly old skool tabular html
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379 layout that is not stripped. -->
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380 <table bgcolor="#FFE5C9"><tr><td><font color="red"><b>
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381 <font size=5><center>This html page seems to have been stripped by Galaxy.</center></font>
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382 Disable Galaxy's html sanitization feature to view the full page (see <font face=monospace>sanitize_all_html</font> in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy.
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383 </b></font></td></tr></table>
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384 </div>
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385
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386 <div id=content>
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387
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388
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389 <section class=index>
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390 <h1>Queries</h1>
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391
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392 <div class=indexentry><a href="#match1">
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393 Query_1: Forward_Primer|NOST-Spec_(Genetic_ID)
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394 (20 letters, 2 hits)
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395 </a></div>
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396 <div class=indexentry><a href="#match2">
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397 Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID)
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398 (20 letters, 0 hits)
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399 </a></div>
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400 <div class=indexentry><a href="#match3">
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401 Query_3: Probe|NOST-Spec_(Genetic_ID)
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402 (20 letters, 3 hits)
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403 </a></div>
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404 <div class=indexentry><a href="#match4">
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405 Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R
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406 (24 letters, 0 hits)
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407 </a></div>
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408 <div class=indexentry><a href="#match5">
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409 Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R
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410 (20 letters, 0 hits)
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411 </a></div>
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412 <div class=indexentry><a href="#match6">
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413 Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R
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414 (25 letters, 2 hits)
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415 </a></div>
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416 <div class=indexentry><a href="#match7">
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417 Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R
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418 (74 letters, 2 hits)
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419 </a></div>
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420
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421 </section>
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422
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423
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424 <section class=match id=match1>
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425
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426 <h1>Nucleotide Sequence (20 letters)</h1>
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427
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428 <section class=header>
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429
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430 <table class=headerdata>
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431 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
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432 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
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433 <tr><td class=param>Query length:</td><td>20</td></tr>
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434 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
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435 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
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436 </table>
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437
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438 </section>
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439
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440
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441 <section class=graphics>
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442 <h2>Graphic Summary</h2>
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443
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444 <div class=grey>
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445 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
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446
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447 <div class=defline id=defline1>
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448 Mouse-over to show defline and scores, click to show alignments
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449 </div>
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450
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451 <div class=graphic>
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452 <h4 class=darkHeader>Color key for alignment scores</h4>
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453 <div class=legend><div class=graphicrow>
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454 <div class=graphicitem style="background-color: black"><40</div>
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455 <div class=graphicitem style="background-color: blue">40–50</div>
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456 <div class=graphicitem style="background-color: green">50–80</div>
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457 <div class=graphicitem style="background-color: magenta">80–200</div>
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458 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
459 </div></div>
|
|
|
460 <div style="clear: left"></div>
|
|
|
461
|
|
|
462 <div class=tablewrapper>
|
|
|
463
|
|
|
464 <div class=scale>
|
|
|
465 <div>query:</div>
|
|
|
466 <div class=graphicrow>
|
|
|
467 <div>
|
|
|
468 <div class=graphicitem style="width: 10.0%">
|
|
|
469 <div>2</div>
|
|
|
470 </div>
|
|
|
471 <div class=graphicitem style="width: 10.0%">
|
|
|
472 <div>4</div>
|
|
|
473 </div>
|
|
|
474 <div class=graphicitem style="width: 10.0%">
|
|
|
475 <div>6</div>
|
|
|
476 </div>
|
|
|
477 <div class=graphicitem style="width: 10.0%">
|
|
|
478 <div>8</div>
|
|
|
479 </div>
|
|
|
480 <div class=graphicitem style="width: 10.0%">
|
|
|
481 <div>10</div>
|
|
|
482 </div>
|
|
|
483 <div class=graphicitem style="width: 10.0%">
|
|
|
484 <div>12</div>
|
|
|
485 </div>
|
|
|
486 <div class=graphicitem style="width: 10.0%">
|
|
|
487 <div>14</div>
|
|
|
488 </div>
|
|
|
489 <div class=graphicitem style="width: 10.0%">
|
|
|
490 <div>16</div>
|
|
|
491 </div>
|
|
|
492 <div class=graphicitem style="width: 10.0%">
|
|
|
493 <div>18</div>
|
|
|
494 </div>
|
|
|
495 <div class=graphicitem style="width: 10.0%">
|
|
|
496 <div>20</div>
|
|
|
497 </div>
|
|
|
498 </div>
|
|
|
499 </div>
|
|
|
500 <div style="clear: left"></div>
|
|
|
501 </div>
|
|
|
502
|
|
|
503 <a class=matchresult
|
|
|
504 href="#hit1"
|
|
|
505 onmouseover='document.getElementById("defline1").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
|
|
|
506 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
507 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
|
|
|
508 <div class="matchrow graphicrow">
|
|
|
509 <div class="matchitem graphicitem"
|
|
|
510 style="background-color: black; width: 100.0%"></div>
|
|
|
511 </div>
|
|
|
512 </a>
|
|
|
513
|
|
|
514 <a class=matchresult
|
|
|
515 href="#hit2"
|
|
|
516 onmouseover='document.getElementById("defline1").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
|
|
|
517 onmouseout='document.getElementById("defline1").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
518 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
|
|
|
519 <div class="matchrow graphicrow">
|
|
|
520 <div class="matchitem graphicitem"
|
|
|
521 style="background-color: black; width: 100.0%"></div>
|
|
|
522 </div>
|
|
|
523 </a>
|
|
|
524
|
|
|
525 </div>
|
|
|
526 </div>
|
|
|
527 </div>
|
|
|
528 </section>
|
|
|
529
|
|
|
530
|
|
|
531
|
|
|
532 <section class=descriptions>
|
|
|
533 <h2>Descriptions</h2>
|
|
|
534
|
|
|
535 <div class=grey><div class=white>
|
|
|
536 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
537
|
|
|
538 <table class=descriptiontable>
|
|
|
539 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
540 <tr>
|
|
|
541 <th>Description</th>
|
|
|
542 <th>Max score</th>
|
|
|
543 <th>Total score</th>
|
|
|
544 <th>Query cover</th>
|
|
|
545 <th>E value</th>
|
|
|
546 <th>Ident</th>
|
|
|
547 <th>Accession</th>
|
|
|
548 </tr>
|
|
|
549 <tr>
|
|
|
550 <td><div><a href="#hit1"
|
|
|
551 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
|
|
|
552 id="description1">
|
|
|
553 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
|
|
|
554 </a></div></td>
|
|
|
555 <td>40.1</td>
|
|
|
556 <td>40.1</td>
|
|
|
557 <td>100%</td>
|
|
|
558 <td>1.513e-07</td>
|
|
|
559 <td>100%</td>
|
|
|
560 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">5</a></td>
|
|
|
561 </tr>
|
|
|
562 <tr>
|
|
|
563 <td><div><a href="#hit2"
|
|
|
564 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
|
|
|
565 id="description2">
|
|
|
566 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
|
|
|
567 </a></div></td>
|
|
|
568 <td>40.1</td>
|
|
|
569 <td>40.1</td>
|
|
|
570 <td>100%</td>
|
|
|
571 <td>1.513e-07</td>
|
|
|
572 <td>100%</td>
|
|
|
573 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">2</a></td>
|
|
|
574 </tr>
|
|
|
575 </table>
|
|
|
576
|
|
|
577 </div></div>
|
|
|
578 </section>
|
|
|
579
|
|
|
580
|
|
|
581
|
|
|
582 <section class=alignments>
|
|
|
583 <h2>Alignments</h2>
|
|
|
584
|
|
|
585 <div class=grey><div class=white>
|
|
|
586 <div class=alignment id=hit1>
|
|
|
587
|
|
|
588 <div class=linkheader>
|
|
|
589 <div class=right><a href="#description1">Descriptions</a></div>
|
|
|
590 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
591 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a>
|
|
|
592 </div>
|
|
|
593
|
|
|
594 <div class=title>
|
|
|
595 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
|
|
|
596 <p class=titleinfo>
|
|
|
597 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">5</a>
|
|
|
598 <span class=b>Length:</span> 2457
|
|
|
599 <span class=b>Number of Matches:</span> 1
|
|
|
600 </p>
|
|
|
601 </div>
|
|
|
602
|
|
|
603
|
|
|
604 <div class=hotspot>
|
|
|
605 <p class=range>
|
|
|
606 <span class=range>Range 1: 2119 to 2138</span>
|
|
|
607 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=2119&to=2138">GenBank</a>
|
|
|
608 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=2119&to=2138">Graphics</a>
|
|
|
609 </p>
|
|
|
610
|
|
|
611 <table class=hotspotstable>
|
|
|
612 <tr>
|
|
|
613 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
614 </tr>
|
|
|
615 <tr>
|
|
|
616 <td>40.1 bits(20)</td>
|
|
|
617 <td>0.0</td>
|
|
|
618 <td>20/20(100%)</td>
|
|
|
619 <td>0/20(0%)</td>
|
|
|
620 <td>Plus/Plus</td>
|
|
|
621 </tr>
|
|
|
622 </table>
|
|
|
623
|
|
|
624 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
|
|
|
625 ||||||||||||||||||||
|
|
|
626 Subject 2119 AGCGCGCAAACTAGGATAAA 2138</pre>
|
|
|
627 </div>
|
|
|
628
|
|
|
629 </div>
|
|
|
630
|
|
|
631 <div class=alignment id=hit2>
|
|
|
632
|
|
|
633 <div class=linkheader>
|
|
|
634 <div class=right><a href="#description2">Descriptions</a></div>
|
|
|
635 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
636 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a>
|
|
|
637 </div>
|
|
|
638
|
|
|
639 <div class=title>
|
|
|
640 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
|
|
|
641 <p class=titleinfo>
|
|
|
642 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">2</a>
|
|
|
643 <span class=b>Length:</span> 323
|
|
|
644 <span class=b>Number of Matches:</span> 1
|
|
|
645 </p>
|
|
|
646 </div>
|
|
|
647
|
|
|
648
|
|
|
649 <div class=hotspot>
|
|
|
650 <p class=range>
|
|
|
651 <span class=range>Range 1: 200 to 219</span>
|
|
|
652 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=200&to=219">GenBank</a>
|
|
|
653 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=200&to=219">Graphics</a>
|
|
|
654 </p>
|
|
|
655
|
|
|
656 <table class=hotspotstable>
|
|
|
657 <tr>
|
|
|
658 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
659 </tr>
|
|
|
660 <tr>
|
|
|
661 <td>40.1 bits(20)</td>
|
|
|
662 <td>0.0</td>
|
|
|
663 <td>20/20(100%)</td>
|
|
|
664 <td>0/20(0%)</td>
|
|
|
665 <td>Plus/Plus</td>
|
|
|
666 </tr>
|
|
|
667 </table>
|
|
|
668
|
|
|
669 <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20
|
|
|
670 ||||||||||||||||||||
|
|
|
671 Subject 200 AGCGCGCAAACTAGGATAAA 219</pre>
|
|
|
672 </div>
|
|
|
673
|
|
|
674 </div>
|
|
|
675
|
|
|
676 </div></div>
|
|
|
677 </section>
|
|
|
678 </section>
|
|
|
679
|
|
|
680 <section class=match id=match2>
|
|
|
681
|
|
|
682 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
683
|
|
|
684 <section class=header>
|
|
|
685
|
|
|
686 <table class=headerdata>
|
|
|
687 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
688 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
689 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
690 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
691 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
|
|
|
692 </table>
|
|
|
693
|
|
|
694 </section>
|
|
|
695
|
|
|
696 <section>
|
|
|
697 <h2>No Hits</h2>
|
|
|
698 <div class=grey>
|
|
|
699 <table class=headerdata>
|
|
|
700 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
701 </table>
|
|
|
702 </div>
|
|
|
703 </section>
|
|
|
704 </section>
|
|
|
705
|
|
|
706 <section class=match id=match3>
|
|
|
707
|
|
|
708 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
709
|
|
|
710 <section class=header>
|
|
|
711
|
|
|
712 <table class=headerdata>
|
|
|
713 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
714 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
715 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
716 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
717 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
|
|
|
718 </table>
|
|
|
719
|
|
|
720 </section>
|
|
|
721
|
|
|
722
|
|
|
723 <section class=graphics>
|
|
|
724 <h2>Graphic Summary</h2>
|
|
|
725
|
|
|
726 <div class=grey>
|
|
|
727 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
|
|
|
728
|
|
|
729 <div class=defline id=defline3>
|
|
|
730 Mouse-over to show defline and scores, click to show alignments
|
|
|
731 </div>
|
|
|
732
|
|
|
733 <div class=graphic>
|
|
|
734 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
735 <div class=legend><div class=graphicrow>
|
|
|
736 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
737 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
738 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
739 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
740 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
741 </div></div>
|
|
|
742 <div style="clear: left"></div>
|
|
|
743
|
|
|
744 <div class=tablewrapper>
|
|
|
745
|
|
|
746 <div class=scale>
|
|
|
747 <div>query:</div>
|
|
|
748 <div class=graphicrow>
|
|
|
749 <div>
|
|
|
750 <div class=graphicitem style="width: 10.0%">
|
|
|
751 <div>2</div>
|
|
|
752 </div>
|
|
|
753 <div class=graphicitem style="width: 10.0%">
|
|
|
754 <div>4</div>
|
|
|
755 </div>
|
|
|
756 <div class=graphicitem style="width: 10.0%">
|
|
|
757 <div>6</div>
|
|
|
758 </div>
|
|
|
759 <div class=graphicitem style="width: 10.0%">
|
|
|
760 <div>8</div>
|
|
|
761 </div>
|
|
|
762 <div class=graphicitem style="width: 10.0%">
|
|
|
763 <div>10</div>
|
|
|
764 </div>
|
|
|
765 <div class=graphicitem style="width: 10.0%">
|
|
|
766 <div>12</div>
|
|
|
767 </div>
|
|
|
768 <div class=graphicitem style="width: 10.0%">
|
|
|
769 <div>14</div>
|
|
|
770 </div>
|
|
|
771 <div class=graphicitem style="width: 10.0%">
|
|
|
772 <div>16</div>
|
|
|
773 </div>
|
|
|
774 <div class=graphicitem style="width: 10.0%">
|
|
|
775 <div>18</div>
|
|
|
776 </div>
|
|
|
777 <div class=graphicitem style="width: 10.0%">
|
|
|
778 <div>20</div>
|
|
|
779 </div>
|
|
|
780 </div>
|
|
|
781 </div>
|
|
|
782 <div style="clear: left"></div>
|
|
|
783 </div>
|
|
|
784
|
|
|
785 <a class=matchresult
|
|
|
786 href="#hit1"
|
|
|
787 onmouseover='document.getElementById("defline3").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"'
|
|
|
788 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
789 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000">
|
|
|
790 <div class="matchrow graphicrow">
|
|
|
791 <div class="matchitem graphicitem"
|
|
|
792 style="background-color: black; width: 100.0%"></div>
|
|
|
793 </div>
|
|
|
794 </a>
|
|
|
795
|
|
|
796 <a class=matchresult
|
|
|
797 href="#hit2"
|
|
|
798 onmouseover='document.getElementById("defline3").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"'
|
|
|
799 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
800 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000">
|
|
|
801 <div class="matchrow graphicrow">
|
|
|
802 <div class="matchitem graphicitem"
|
|
|
803 style="background-color: black; width: 100.0%"></div>
|
|
|
804 </div>
|
|
|
805 </a>
|
|
|
806
|
|
|
807 <a class=matchresult
|
|
|
808 href="#hit3"
|
|
|
809 onmouseover='document.getElementById("defline3").innerHTML="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3\u0027UTR/plant_junction_region.|-9105899556052450000"'
|
|
|
810 onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
811 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000">
|
|
|
812 <div class="matchrow graphicrow">
|
|
|
813 <div class="matchitem graphicitem"
|
|
|
814 style="background-color: transparent; width: 15.0%"></div>
|
|
|
815 <div class="matchitem graphicitem"
|
|
|
816 style="background-color: black; width: 85.0%"></div>
|
|
|
817 </div>
|
|
|
818 </a>
|
|
|
819
|
|
|
820 </div>
|
|
|
821 </div>
|
|
|
822 </div>
|
|
|
823 </section>
|
|
|
824
|
|
|
825
|
|
|
826
|
|
|
827 <section class=descriptions>
|
|
|
828 <h2>Descriptions</h2>
|
|
|
829
|
|
|
830 <div class=grey><div class=white>
|
|
|
831 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
832
|
|
|
833 <table class=descriptiontable>
|
|
|
834 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
835 <tr>
|
|
|
836 <th>Description</th>
|
|
|
837 <th>Max score</th>
|
|
|
838 <th>Total score</th>
|
|
|
839 <th>Query cover</th>
|
|
|
840 <th>E value</th>
|
|
|
841 <th>Ident</th>
|
|
|
842 <th>Accession</th>
|
|
|
843 </tr>
|
|
|
844 <tr>
|
|
|
845 <td><div><a href="#hit1"
|
|
|
846 title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"
|
|
|
847 id="description1">
|
|
|
848 AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000
|
|
|
849 </a></div></td>
|
|
|
850 <td>40.1</td>
|
|
|
851 <td>40.1</td>
|
|
|
852 <td>100%</td>
|
|
|
853 <td>1.513e-07</td>
|
|
|
854 <td>100%</td>
|
|
|
855 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">5</a></td>
|
|
|
856 </tr>
|
|
|
857 <tr>
|
|
|
858 <td><div><a href="#hit2"
|
|
|
859 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
|
|
|
860 id="description2">
|
|
|
861 DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000
|
|
|
862 </a></div></td>
|
|
|
863 <td>40.1</td>
|
|
|
864 <td>40.1</td>
|
|
|
865 <td>100%</td>
|
|
|
866 <td>1.513e-07</td>
|
|
|
867 <td>100%</td>
|
|
|
868 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">2</a></td>
|
|
|
869 </tr>
|
|
|
870 <tr>
|
|
|
871 <td><div><a href="#hit3"
|
|
|
872 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000"
|
|
|
873 id="description3">
|
|
|
874 AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000
|
|
|
875 </a></div></td>
|
|
|
876 <td>34.2</td>
|
|
|
877 <td>34.2</td>
|
|
|
878 <td>85%</td>
|
|
|
879 <td>9.334e-06</td>
|
|
|
880 <td>100%</td>
|
|
|
881 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">1</a></td>
|
|
|
882 </tr>
|
|
|
883 </table>
|
|
|
884
|
|
|
885 </div></div>
|
|
|
886 </section>
|
|
|
887
|
|
|
888
|
|
|
889
|
|
|
890 <section class=alignments>
|
|
|
891 <h2>Alignments</h2>
|
|
|
892
|
|
|
893 <div class=grey><div class=white>
|
|
|
894 <div class=alignment id=hit1>
|
|
|
895
|
|
|
896 <div class=linkheader>
|
|
|
897 <div class=right><a href="#description1">Descriptions</a></div>
|
|
|
898 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
899 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a>
|
|
|
900 </div>
|
|
|
901
|
|
|
902 <div class=title>
|
|
|
903 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
|
|
|
904 <p class=titleinfo>
|
|
|
905 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">5</a>
|
|
|
906 <span class=b>Length:</span> 2457
|
|
|
907 <span class=b>Number of Matches:</span> 1
|
|
|
908 </p>
|
|
|
909 </div>
|
|
|
910
|
|
|
911
|
|
|
912 <div class=hotspot>
|
|
|
913 <p class=range>
|
|
|
914 <span class=range>Range 1: 2143 to 2162</span>
|
|
|
915 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=2143&to=2162">GenBank</a>
|
|
|
916 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=2143&to=2162">Graphics</a>
|
|
|
917 </p>
|
|
|
918
|
|
|
919 <table class=hotspotstable>
|
|
|
920 <tr>
|
|
|
921 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
922 </tr>
|
|
|
923 <tr>
|
|
|
924 <td>40.1 bits(20)</td>
|
|
|
925 <td>0.0</td>
|
|
|
926 <td>20/20(100%)</td>
|
|
|
927 <td>0/20(0%)</td>
|
|
|
928 <td>Plus/Plus</td>
|
|
|
929 </tr>
|
|
|
930 </table>
|
|
|
931
|
|
|
932 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
|
|
|
933 ||||||||||||||||||||
|
|
|
934 Subject 2143 CGCGCGCGGTGTCATCTATG 2162</pre>
|
|
|
935 </div>
|
|
|
936
|
|
|
937 </div>
|
|
|
938
|
|
|
939 <div class=alignment id=hit2>
|
|
|
940
|
|
|
941 <div class=linkheader>
|
|
|
942 <div class=right><a href="#description2">Descriptions</a></div>
|
|
|
943 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
944 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a>
|
|
|
945 </div>
|
|
|
946
|
|
|
947 <div class=title>
|
|
|
948 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
|
|
|
949 <p class=titleinfo>
|
|
|
950 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">2</a>
|
|
|
951 <span class=b>Length:</span> 323
|
|
|
952 <span class=b>Number of Matches:</span> 1
|
|
|
953 </p>
|
|
|
954 </div>
|
|
|
955
|
|
|
956
|
|
|
957 <div class=hotspot>
|
|
|
958 <p class=range>
|
|
|
959 <span class=range>Range 1: 224 to 243</span>
|
|
|
960 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=224&to=243">GenBank</a>
|
|
|
961 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=224&to=243">Graphics</a>
|
|
|
962 </p>
|
|
|
963
|
|
|
964 <table class=hotspotstable>
|
|
|
965 <tr>
|
|
|
966 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
967 </tr>
|
|
|
968 <tr>
|
|
|
969 <td>40.1 bits(20)</td>
|
|
|
970 <td>0.0</td>
|
|
|
971 <td>20/20(100%)</td>
|
|
|
972 <td>0/20(0%)</td>
|
|
|
973 <td>Plus/Plus</td>
|
|
|
974 </tr>
|
|
|
975 </table>
|
|
|
976
|
|
|
977 <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20
|
|
|
978 ||||||||||||||||||||
|
|
|
979 Subject 224 CGCGCGCGGTGTCATCTATG 243</pre>
|
|
|
980 </div>
|
|
|
981
|
|
|
982 </div>
|
|
|
983
|
|
|
984 <div class=alignment id=hit3>
|
|
|
985
|
|
|
986 <div class=linkheader>
|
|
|
987 <div class=right><a href="#description3">Descriptions</a></div>
|
|
|
988 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
989 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a>
|
|
|
990 </div>
|
|
|
991
|
|
|
992 <div class=title>
|
|
|
993 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</p>
|
|
|
994 <p class=titleinfo>
|
|
|
995 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">1</a>
|
|
|
996 <span class=b>Length:</span> 1045
|
|
|
997 <span class=b>Number of Matches:</span> 1
|
|
|
998 </p>
|
|
|
999 </div>
|
|
|
1000
|
|
|
1001
|
|
|
1002 <div class=hotspot>
|
|
|
1003 <p class=range>
|
|
|
1004 <span class=range>Range 1: 2 to 18</span>
|
|
|
1005 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=2&to=18">GenBank</a>
|
|
|
1006 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=2&to=18">Graphics</a>
|
|
|
1007 </p>
|
|
|
1008
|
|
|
1009 <table class=hotspotstable>
|
|
|
1010 <tr>
|
|
|
1011 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1012 </tr>
|
|
|
1013 <tr>
|
|
|
1014 <td>34.2 bits(17)</td>
|
|
|
1015 <td>0.0</td>
|
|
|
1016 <td>17/17(100%)</td>
|
|
|
1017 <td>0/17(0%)</td>
|
|
|
1018 <td>Plus/Plus</td>
|
|
|
1019 </tr>
|
|
|
1020 </table>
|
|
|
1021
|
|
|
1022 <pre class=alignmentgraphic>Query 4 GCGCGGTGTCATCTATG 20
|
|
|
1023 |||||||||||||||||
|
|
|
1024 Subject 2 GCGCGGTGTCATCTATG 18</pre>
|
|
|
1025 </div>
|
|
|
1026
|
|
|
1027 </div>
|
|
|
1028
|
|
|
1029 </div></div>
|
|
|
1030 </section>
|
|
|
1031 </section>
|
|
|
1032
|
|
|
1033 <section class=match id=match4>
|
|
|
1034
|
|
|
1035 <h1>Nucleotide Sequence (24 letters)</h1>
|
|
|
1036
|
|
|
1037 <section class=header>
|
|
|
1038
|
|
|
1039 <table class=headerdata>
|
|
|
1040 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1041 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1042 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1043 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1044 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
|
|
|
1045 </table>
|
|
|
1046
|
|
|
1047 </section>
|
|
|
1048
|
|
|
1049 <section>
|
|
|
1050 <h2>No Hits</h2>
|
|
|
1051 <div class=grey>
|
|
|
1052 <table class=headerdata>
|
|
|
1053 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1054 </table>
|
|
|
1055 </div>
|
|
|
1056 </section>
|
|
|
1057 </section>
|
|
|
1058
|
|
|
1059 <section class=match id=match5>
|
|
|
1060
|
|
|
1061 <h1>Nucleotide Sequence (20 letters)</h1>
|
|
|
1062
|
|
|
1063 <section class=header>
|
|
|
1064
|
|
|
1065 <table class=headerdata>
|
|
|
1066 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1067 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1068 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1069 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1070 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
|
|
|
1071 </table>
|
|
|
1072
|
|
|
1073 </section>
|
|
|
1074
|
|
|
1075 <section>
|
|
|
1076 <h2>No Hits</h2>
|
|
|
1077 <div class=grey>
|
|
|
1078 <table class=headerdata>
|
|
|
1079 <tr><td class=param>Message:</td><td>No hits found</td></tr>
|
|
|
1080 </table>
|
|
|
1081 </div>
|
|
|
1082 </section>
|
|
|
1083 </section>
|
|
|
1084
|
|
|
1085 <section class=match id=match6>
|
|
|
1086
|
|
|
1087 <h1>Nucleotide Sequence (25 letters)</h1>
|
|
|
1088
|
|
|
1089 <section class=header>
|
|
|
1090
|
|
|
1091 <table class=headerdata>
|
|
|
1092 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1093 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1094 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1095 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1096 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
|
|
|
1097 </table>
|
|
|
1098
|
|
|
1099 </section>
|
|
|
1100
|
|
|
1101
|
|
|
1102 <section class=graphics>
|
|
|
1103 <h2>Graphic Summary</h2>
|
|
|
1104
|
|
|
1105 <div class=grey>
|
|
|
1106 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
|
|
|
1107
|
|
|
1108 <div class=defline id=defline6>
|
|
|
1109 Mouse-over to show defline and scores, click to show alignments
|
|
|
1110 </div>
|
|
|
1111
|
|
|
1112 <div class=graphic>
|
|
|
1113 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
1114 <div class=legend><div class=graphicrow>
|
|
|
1115 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
1116 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
1117 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
1118 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
1119 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
1120 </div></div>
|
|
|
1121 <div style="clear: left"></div>
|
|
|
1122
|
|
|
1123 <div class=tablewrapper>
|
|
|
1124
|
|
|
1125 <div class=scale>
|
|
|
1126 <div>query:</div>
|
|
|
1127 <div class=graphicrow>
|
|
|
1128 <div>
|
|
|
1129 <div class=graphicitem style="width: 12.0%">
|
|
|
1130 <div>3</div>
|
|
|
1131 </div>
|
|
|
1132 <div class=graphicitem style="width: 12.0%">
|
|
|
1133 <div>6</div>
|
|
|
1134 </div>
|
|
|
1135 <div class=graphicitem style="width: 12.0%">
|
|
|
1136 <div>9</div>
|
|
|
1137 </div>
|
|
|
1138 <div class=graphicitem style="width: 12.0%">
|
|
|
1139 <div>12</div>
|
|
|
1140 </div>
|
|
|
1141 <div class=graphicitem style="width: 12.0%">
|
|
|
1142 <div>15</div>
|
|
|
1143 </div>
|
|
|
1144 <div class=graphicitem style="width: 12.0%">
|
|
|
1145 <div>18</div>
|
|
|
1146 </div>
|
|
|
1147 <div class=graphicitem style="width: 12.0%">
|
|
|
1148 <div>21</div>
|
|
|
1149 </div>
|
|
|
1150 <div class=graphicitem style="width: 12.0%">
|
|
|
1151 <div>24</div>
|
|
|
1152 </div>
|
|
|
1153 <div class=graphicitem style="width: 4.0%">
|
|
|
1154 <div>25</div>
|
|
|
1155 </div>
|
|
|
1156 </div>
|
|
|
1157 </div>
|
|
|
1158 <div style="clear: left"></div>
|
|
|
1159 </div>
|
|
|
1160
|
|
|
1161 <a class=matchresult
|
|
|
1162 href="#hit1"
|
|
|
1163 onmouseover='document.getElementById("defline6").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
|
|
|
1164 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1165 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
|
|
|
1166 <div class="matchrow graphicrow">
|
|
|
1167 <div class="matchitem graphicitem"
|
|
|
1168 style="background-color: black; width: 88.0%"></div>
|
|
|
1169 <div class="matchitem graphicitem"
|
|
|
1170 style="background-color: transparent; width: 12.0%"></div>
|
|
|
1171 </div>
|
|
|
1172 </a>
|
|
|
1173
|
|
|
1174 <a class=matchresult
|
|
|
1175 href="#hit2"
|
|
|
1176 onmouseover='document.getElementById("defline6").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
|
|
|
1177 onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1178 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
|
|
|
1179 <div class="matchrow graphicrow">
|
|
|
1180 <div class="matchitem graphicitem"
|
|
|
1181 style="background-color: black; width: 88.0%"></div>
|
|
|
1182 <div class="matchitem graphicitem"
|
|
|
1183 style="background-color: transparent; width: 12.0%"></div>
|
|
|
1184 </div>
|
|
|
1185 </a>
|
|
|
1186
|
|
|
1187 </div>
|
|
|
1188 </div>
|
|
|
1189 </div>
|
|
|
1190 </section>
|
|
|
1191
|
|
|
1192
|
|
|
1193
|
|
|
1194 <section class=descriptions>
|
|
|
1195 <h2>Descriptions</h2>
|
|
|
1196
|
|
|
1197 <div class=grey><div class=white>
|
|
|
1198 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
1199
|
|
|
1200 <table class=descriptiontable>
|
|
|
1201 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
1202 <tr>
|
|
|
1203 <th>Description</th>
|
|
|
1204 <th>Max score</th>
|
|
|
1205 <th>Total score</th>
|
|
|
1206 <th>Query cover</th>
|
|
|
1207 <th>E value</th>
|
|
|
1208 <th>Ident</th>
|
|
|
1209 <th>Accession</th>
|
|
|
1210 </tr>
|
|
|
1211 <tr>
|
|
|
1212 <td><div><a href="#hit1"
|
|
|
1213 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
|
|
|
1214 id="description1">
|
|
|
1215 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
|
|
|
1216 </a></div></td>
|
|
|
1217 <td>36.2</td>
|
|
|
1218 <td>36.2</td>
|
|
|
1219 <td>88%</td>
|
|
|
1220 <td>3.148e-06</td>
|
|
|
1221 <td>95%</td>
|
|
|
1222 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">7</a></td>
|
|
|
1223 </tr>
|
|
|
1224 <tr>
|
|
|
1225 <td><div><a href="#hit2"
|
|
|
1226 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
|
|
|
1227 id="description2">
|
|
|
1228 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
|
|
|
1229 </a></div></td>
|
|
|
1230 <td>36.2</td>
|
|
|
1231 <td>36.2</td>
|
|
|
1232 <td>88%</td>
|
|
|
1233 <td>3.148e-06</td>
|
|
|
1234 <td>95%</td>
|
|
|
1235 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">6</a></td>
|
|
|
1236 </tr>
|
|
|
1237 </table>
|
|
|
1238
|
|
|
1239 </div></div>
|
|
|
1240 </section>
|
|
|
1241
|
|
|
1242
|
|
|
1243
|
|
|
1244 <section class=alignments>
|
|
|
1245 <h2>Alignments</h2>
|
|
|
1246
|
|
|
1247 <div class=grey><div class=white>
|
|
|
1248 <div class=alignment id=hit1>
|
|
|
1249
|
|
|
1250 <div class=linkheader>
|
|
|
1251 <div class=right><a href="#description1">Descriptions</a></div>
|
|
|
1252 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
1253 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a>
|
|
|
1254 </div>
|
|
|
1255
|
|
|
1256 <div class=title>
|
|
|
1257 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
|
|
|
1258 <p class=titleinfo>
|
|
|
1259 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">7</a>
|
|
|
1260 <span class=b>Length:</span> 4983
|
|
|
1261 <span class=b>Number of Matches:</span> 1
|
|
|
1262 </p>
|
|
|
1263 </div>
|
|
|
1264
|
|
|
1265
|
|
|
1266 <div class=hotspot>
|
|
|
1267 <p class=range>
|
|
|
1268 <span class=range>Range 1: 2344 to 2365</span>
|
|
|
1269 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=2344&to=2365">GenBank</a>
|
|
|
1270 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=2344&to=2365">Graphics</a>
|
|
|
1271 </p>
|
|
|
1272
|
|
|
1273 <table class=hotspotstable>
|
|
|
1274 <tr>
|
|
|
1275 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1276 </tr>
|
|
|
1277 <tr>
|
|
|
1278 <td>36.2 bits(18)</td>
|
|
|
1279 <td>0.0</td>
|
|
|
1280 <td>21/22(95%)</td>
|
|
|
1281 <td>0/22(0%)</td>
|
|
|
1282 <td>Plus/Plus</td>
|
|
|
1283 </tr>
|
|
|
1284 </table>
|
|
|
1285
|
|
|
1286 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22
|
|
|
1287 |||||||||||||| |||||||
|
|
|
1288 Subject 2344 ACATGAACAGCGCCCTGACCAC 2365</pre>
|
|
|
1289 </div>
|
|
|
1290
|
|
|
1291 </div>
|
|
|
1292
|
|
|
1293 <div class=alignment id=hit2>
|
|
|
1294
|
|
|
1295 <div class=linkheader>
|
|
|
1296 <div class=right><a href="#description2">Descriptions</a></div>
|
|
|
1297 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
1298 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a>
|
|
|
1299 </div>
|
|
|
1300
|
|
|
1301 <div class=title>
|
|
|
1302 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
|
|
|
1303 <p class=titleinfo>
|
|
|
1304 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">6</a>
|
|
|
1305 <span class=b>Length:</span> 4180
|
|
|
1306 <span class=b>Number of Matches:</span> 1
|
|
|
1307 </p>
|
|
|
1308 </div>
|
|
|
1309
|
|
|
1310
|
|
|
1311 <div class=hotspot>
|
|
|
1312 <p class=range>
|
|
|
1313 <span class=range>Range 1: 1541 to 1562</span>
|
|
|
1314 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=1541&to=1562">GenBank</a>
|
|
|
1315 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=1541&to=1562">Graphics</a>
|
|
|
1316 </p>
|
|
|
1317
|
|
|
1318 <table class=hotspotstable>
|
|
|
1319 <tr>
|
|
|
1320 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1321 </tr>
|
|
|
1322 <tr>
|
|
|
1323 <td>36.2 bits(18)</td>
|
|
|
1324 <td>0.0</td>
|
|
|
1325 <td>21/22(95%)</td>
|
|
|
1326 <td>0/22(0%)</td>
|
|
|
1327 <td>Plus/Plus</td>
|
|
|
1328 </tr>
|
|
|
1329 </table>
|
|
|
1330
|
|
|
1331 <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCAC 22
|
|
|
1332 |||||||||||||| |||||||
|
|
|
1333 Subject 1541 ACATGAACAGCGCCCTGACCAC 1562</pre>
|
|
|
1334 </div>
|
|
|
1335
|
|
|
1336 </div>
|
|
|
1337
|
|
|
1338 </div></div>
|
|
|
1339 </section>
|
|
|
1340 </section>
|
|
|
1341
|
|
|
1342 <section class=match id=match7>
|
|
|
1343
|
|
|
1344 <h1>Nucleotide Sequence (74 letters)</h1>
|
|
|
1345
|
|
|
1346 <section class=header>
|
|
|
1347
|
|
|
1348 <table class=headerdata>
|
|
|
1349 <tr><td class=param>Query ID:</td><td>Query_1</td></tr>
|
|
|
1350 <tr><td class=param>Query definition:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr>
|
|
|
1351 <tr><td class=param>Query length:</td><td>20</td></tr>
|
|
|
1352 <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr>
|
|
|
1353 <tr><td class=param>Database:</td><td>/opt/galaxy/blastdbs/EUginius_plasmid_insert</td></tr>
|
|
|
1354 </table>
|
|
|
1355
|
|
|
1356 </section>
|
|
|
1357
|
|
|
1358
|
|
|
1359 <section class=graphics>
|
|
|
1360 <h2>Graphic Summary</h2>
|
|
|
1361
|
|
|
1362 <div class=grey>
|
|
|
1363 <h3 class=centered>Distribution of 7 Blast Hits on the Query Sequence</h3>
|
|
|
1364
|
|
|
1365 <div class=defline id=defline7>
|
|
|
1366 Mouse-over to show defline and scores, click to show alignments
|
|
|
1367 </div>
|
|
|
1368
|
|
|
1369 <div class=graphic>
|
|
|
1370 <h4 class=darkHeader>Color key for alignment scores</h4>
|
|
|
1371 <div class=legend><div class=graphicrow>
|
|
|
1372 <div class=graphicitem style="background-color: black"><40</div>
|
|
|
1373 <div class=graphicitem style="background-color: blue">40–50</div>
|
|
|
1374 <div class=graphicitem style="background-color: green">50–80</div>
|
|
|
1375 <div class=graphicitem style="background-color: magenta">80–200</div>
|
|
|
1376 <div class=graphicitem style="background-color: red">200≤</div>
|
|
|
1377 </div></div>
|
|
|
1378 <div style="clear: left"></div>
|
|
|
1379
|
|
|
1380 <div class=tablewrapper>
|
|
|
1381
|
|
|
1382 <div class=scale>
|
|
|
1383 <div>query:</div>
|
|
|
1384 <div class=graphicrow>
|
|
|
1385 <div>
|
|
|
1386 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
1387 <div>8</div>
|
|
|
1388 </div>
|
|
|
1389 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
1390 <div>16</div>
|
|
|
1391 </div>
|
|
|
1392 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
1393 <div>24</div>
|
|
|
1394 </div>
|
|
|
1395 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
1396 <div>32</div>
|
|
|
1397 </div>
|
|
|
1398 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
1399 <div>40</div>
|
|
|
1400 </div>
|
|
|
1401 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
1402 <div>48</div>
|
|
|
1403 </div>
|
|
|
1404 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
1405 <div>56</div>
|
|
|
1406 </div>
|
|
|
1407 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
1408 <div>64</div>
|
|
|
1409 </div>
|
|
|
1410 <div class=graphicitem style="width: 10.81081081081081%">
|
|
|
1411 <div>72</div>
|
|
|
1412 </div>
|
|
|
1413 <div class=graphicitem style="width: 2.7027027027027026%">
|
|
|
1414 <div> </div>
|
|
|
1415 <div class=lastlabel>74</div>
|
|
|
1416 </div>
|
|
|
1417 </div>
|
|
|
1418 </div>
|
|
|
1419 <div style="clear: left"></div>
|
|
|
1420 </div>
|
|
|
1421
|
|
|
1422 <a class=matchresult
|
|
|
1423 href="#hit1"
|
|
|
1424 onmouseover='document.getElementById("defline7").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"'
|
|
|
1425 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1426 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000">
|
|
|
1427 <div class="matchrow graphicrow">
|
|
|
1428 <div class="matchitem graphicitem"
|
|
|
1429 style="background-color: green; width: 100.0%"></div>
|
|
|
1430 </div>
|
|
|
1431 </a>
|
|
|
1432
|
|
|
1433 <a class=matchresult
|
|
|
1434 href="#hit2"
|
|
|
1435 onmouseover='document.getElementById("defline7").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"'
|
|
|
1436 onmouseout='document.getElementById("defline7").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
|
|
|
1437 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000">
|
|
|
1438 <div class="matchrow graphicrow">
|
|
|
1439 <div class="matchitem graphicitem"
|
|
|
1440 style="background-color: green; width: 100.0%"></div>
|
|
|
1441 </div>
|
|
|
1442 </a>
|
|
|
1443
|
|
|
1444 </div>
|
|
|
1445 </div>
|
|
|
1446 </div>
|
|
|
1447 </section>
|
|
|
1448
|
|
|
1449
|
|
|
1450
|
|
|
1451 <section class=descriptions>
|
|
|
1452 <h2>Descriptions</h2>
|
|
|
1453
|
|
|
1454 <div class=grey><div class=white>
|
|
|
1455 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
|
|
|
1456
|
|
|
1457 <table class=descriptiontable>
|
|
|
1458 <col/><col/><col/><col/><col/><col/><col/>
|
|
|
1459 <tr>
|
|
|
1460 <th>Description</th>
|
|
|
1461 <th>Max score</th>
|
|
|
1462 <th>Total score</th>
|
|
|
1463 <th>Query cover</th>
|
|
|
1464 <th>E value</th>
|
|
|
1465 <th>Ident</th>
|
|
|
1466 <th>Accession</th>
|
|
|
1467 </tr>
|
|
|
1468 <tr>
|
|
|
1469 <td><div><a href="#hit1"
|
|
|
1470 title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"
|
|
|
1471 id="description1">
|
|
|
1472 EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000
|
|
|
1473 </a></div></td>
|
|
|
1474 <td>67.9</td>
|
|
|
1475 <td>67.9</td>
|
|
|
1476 <td>100%</td>
|
|
|
1477 <td>3.564e-15</td>
|
|
|
1478 <td>86%</td>
|
|
|
1479 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">7</a></td>
|
|
|
1480 </tr>
|
|
|
1481 <tr>
|
|
|
1482 <td><div><a href="#hit2"
|
|
|
1483 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
|
|
|
1484 id="description2">
|
|
|
1485 AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000
|
|
|
1486 </a></div></td>
|
|
|
1487 <td>67.9</td>
|
|
|
1488 <td>67.9</td>
|
|
|
1489 <td>100%</td>
|
|
|
1490 <td>3.564e-15</td>
|
|
|
1491 <td>86%</td>
|
|
|
1492 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">6</a></td>
|
|
|
1493 </tr>
|
|
|
1494 </table>
|
|
|
1495
|
|
|
1496 </div></div>
|
|
|
1497 </section>
|
|
|
1498
|
|
|
1499
|
|
|
1500
|
|
|
1501 <section class=alignments>
|
|
|
1502 <h2>Alignments</h2>
|
|
|
1503
|
|
|
1504 <div class=grey><div class=white>
|
|
|
1505 <div class=alignment id=hit1>
|
|
|
1506
|
|
|
1507 <div class=linkheader>
|
|
|
1508 <div class=right><a href="#description1">Descriptions</a></div>
|
|
|
1509 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
1510 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a>
|
|
|
1511 </div>
|
|
|
1512
|
|
|
1513 <div class=title>
|
|
|
1514 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
|
|
|
1515 <p class=titleinfo>
|
|
|
1516 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">7</a>
|
|
|
1517 <span class=b>Length:</span> 4983
|
|
|
1518 <span class=b>Number of Matches:</span> 1
|
|
|
1519 </p>
|
|
|
1520 </div>
|
|
|
1521
|
|
|
1522
|
|
|
1523 <div class=hotspot>
|
|
|
1524 <p class=range>
|
|
|
1525 <span class=range>Range 1: 2319 to 2392</span>
|
|
|
1526 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=2319&to=2392">GenBank</a>
|
|
|
1527 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=2319&to=2392">Graphics</a>
|
|
|
1528 </p>
|
|
|
1529
|
|
|
1530 <table class=hotspotstable>
|
|
|
1531 <tr>
|
|
|
1532 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1533 </tr>
|
|
|
1534 <tr>
|
|
|
1535 <td>67.9 bits(34)</td>
|
|
|
1536 <td>0.0</td>
|
|
|
1537 <td>64/74(86%)</td>
|
|
|
1538 <td>0/74(0%)</td>
|
|
|
1539 <td>Plus/Plus</td>
|
|
|
1540 </tr>
|
|
|
1541 </table>
|
|
|
1542
|
|
|
1543 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA 74
|
|
|
1544 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||
|
|
|
1545 Subject 2319 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA 2392</pre>
|
|
|
1546 </div>
|
|
|
1547
|
|
|
1548 </div>
|
|
|
1549
|
|
|
1550 <div class=alignment id=hit2>
|
|
|
1551
|
|
|
1552 <div class=linkheader>
|
|
|
1553 <div class=right><a href="#description2">Descriptions</a></div>
|
|
|
1554 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">GenBank</a>
|
|
|
1555 <a class=linkheader href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign">Graphics</a>
|
|
|
1556 </div>
|
|
|
1557
|
|
|
1558 <div class=title>
|
|
|
1559 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
|
|
|
1560 <p class=titleinfo>
|
|
|
1561 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign">6</a>
|
|
|
1562 <span class=b>Length:</span> 4180
|
|
|
1563 <span class=b>Number of Matches:</span> 1
|
|
|
1564 </p>
|
|
|
1565 </div>
|
|
|
1566
|
|
|
1567
|
|
|
1568 <div class=hotspot>
|
|
|
1569 <p class=range>
|
|
|
1570 <span class=range>Range 1: 1516 to 1589</span>
|
|
|
1571 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=genbank&log$=nuclalign&from=1516&to=1589">GenBank</a>
|
|
|
1572 <a class=range href="http://www.ncbi.nlm.nih.gov/nucleotide/BL_ORD_ID?report=graph&log$=nuclalign&from=1516&to=1589">Graphics</a>
|
|
|
1573 </p>
|
|
|
1574
|
|
|
1575 <table class=hotspotstable>
|
|
|
1576 <tr>
|
|
|
1577 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
|
|
|
1578 </tr>
|
|
|
1579 <tr>
|
|
|
1580 <td>67.9 bits(34)</td>
|
|
|
1581 <td>0.0</td>
|
|
|
1582 <td>64/74(86%)</td>
|
|
|
1583 <td>0/74(0%)</td>
|
|
|
1584 <td>Plus/Plus</td>
|
|
|
1585 </tr>
|
|
|
1586 </table>
|
|
|
1587
|
|
|
1588 <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTGTTCGCAGTCCAGAA 74
|
|
|
1589 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | ||||| ||||||||
|
|
|
1590 Subject 1516 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTCTTCGCCGTCCAGAA 1589</pre>
|
|
|
1591 </div>
|
|
|
1592
|
|
|
1593 </div>
|
|
|
1594
|
|
|
1595 </div></div>
|
|
|
1596 </section>
|
|
|
1597 </section>
|
|
|
1598
|
|
|
1599 </div>
|
|
|
1600
|
|
|
1601 <footer>
|
|
|
1602 This page was generated by <a href="...">blast2html</a>.
|
|
|
1603 </footer>
|
|
|
1604 </body>
|
|
|
1605 </html>
|
|
|
1606
|
