Mercurial > repos > jankanis > blast2html

annotate blast2html.html.jinja @ 26:eee23a36c582

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add a warning if galaxy strips the html header/stylesheet
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 15 May 2014 12:44:44 +0200
parents c8347745bbad
children 4e6ac737ba17
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 <!DOCTYPE html>
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2 <html>
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3 <head>
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4 <meta charset="UTF-8">
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5 <meta name=generator content="blast2html; see ...">
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7 <title>Blast output</title>
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8
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9 <style>
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10 body {
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11 color: #333333;
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12 font-family: Arial,Sans-Serif;
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13 }
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15 :link {
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16 color: #336699;
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17 }
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18
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19 .right {
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20 float: right;
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21 }
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eee23a36c582 add a warning if galaxy strips the html header/stylesheet
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23 /* Galaxy with html sanitization enabled strips the header of this html page. If so, show the user a warning.*/
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24 #strip_html_warning {
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25 display: none;
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26 }
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27
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28 #content {
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29 margin: 0 2em;
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30 padding: 0.5em;
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31 border: 1px solid #888888;
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32 background-color: #d3dff5;
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33 }
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35 h1, h2, h3, h4, h5, h6 {
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36 color: #2A6979;
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37 font-family: arial,verdana,sans-serif;
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38 letter-spacing: -1px;
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39 margin: 1.2em 0 0.3em;
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40 }
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41
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42 h1 {
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43 border-bottom: 1px solid #CCCCCC;
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44 font-size: 150%;
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45 padding-bottom: 0.1em;
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46 }
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47
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48 h2 {
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49 font-size: 120%;
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50 font-weight: bold;
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51 }
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52
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53 h4.darkHeader {
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54 color: #4D4D4D;
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55 letter-spacing: 0;
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56 font-weight: bold;
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57 }
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58
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59 #nodata {
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60 font-weight: bold;
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61 }
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62
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63 .index {
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64 margin-bottom: 3em;
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65 }
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66 .index div.indexentry {
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67 margin: 1.2em 1.6em;
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68 font-weight: bold;
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69 font-size: 100%;
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70 }
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71
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72 .headerdata {
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73 font-size: 90%;
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74 }
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75 .headerdata .param {
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76 font-weight: bold;
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77 text-align: right;
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78 padding: 0 1em;
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79 }
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80
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81 .grey {
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82 background-color: #eeeeee;
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83 border: 1px solid #cccccc;
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84 padding: 1em;
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85 }
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86
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87 .white {
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88 background-color: white;
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89 border: 1px solid #cccccc;
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90 padding: 1.5em 2%;
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91 }
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92
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93 .graphicrow {
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94 clear: left;
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95 width: 100%;
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96 }
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97
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98 .graphicitem {
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99 float: left;
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100 }
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103
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104 .graphics .grey {
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105 text-align: center;
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106 }
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107
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108 .graphic {
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109 background-color: white;
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110 border: 2px solid black;
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111 padding: 1.5em;
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112 margin: auto;
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113 }
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114
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115 .centered, .defline, div.legend, div.tablewrapper {
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116 margin-left: auto;
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117 margin-right: auto;
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118 }
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119
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120 .defline {
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121 background-color: white;
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122 border: 1px solid black;
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123 margin: .5em auto;
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124 padding-left: .2em;
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125 padding-right: .2em;
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126 max-width: 50em;
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127 text-align: left;
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128 height: 2.8em;
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129 overflow-y: hidden;
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130 }
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131
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132 div.legend {
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133 max-width: 40em;
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134 }
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135 div.legend div {
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136 width: 100%;
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137 color: white;
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138 font-weight: bold;
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139 border-spacing: 0;
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140 }
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141 div.legend div .graphicitem {
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142 width: 20%;
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143 padding: 0;
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144 margin: 0;
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145 border: none;
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146 }
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147
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148 div.tablewrapper {
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149 width: 50%;
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150 min-width: 60em;
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151 }
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152
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153 /* For small widths we give the graphic 100% */
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154 @media (max-width: 72.5em) {
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155 div.tablewrapper {
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156 width: 100%;
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157 min-width: 0px;
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158 }
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159 }
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160
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161 .scale {
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162 width: 100%;
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163 margin: .5em 0;
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164 font-weight: bold;
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165 }
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166 .scale div {
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167 color: red;
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168 text-align: left;
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169 }
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170 .scale .graphicrow {
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171 margin: .5em 0 .5em 0;
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172 color: white;
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173 }
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174 .scale .graphicitem {
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175 position: relative;
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176 }
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177 .scale .graphicitem div {
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178 margin: 0 1px;
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179 padding: 0 2px;
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180 text-align: right;
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181 background-color: red;
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182 color: white;
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183 }
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184 .scale .graphicitem:first-child div {
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185 margin-left: 0px;
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186 }
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187 .scale .graphicitem:last-child div {
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188 margin-right: 0px;
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189 }
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190 .scale .graphicitem .lastlabel {
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191 position: absolute;
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192 top: 0px;
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193 left: 100%;
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194 background-color: transparent;
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195 color: red;
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196 }
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197
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198 a.matchresult {
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199 display: block;
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200 margin: 0;
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201 padding: 0;
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202 }
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203 div.matchrow {
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204 margin-top: 4px;
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205 }
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206 div.matchrow, div.matchitem {
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207 height: 4px;
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208 }
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209
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210
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211 table.descriptiontable {
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212 font-size: 85%;
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213 border: 1px solid #97b0c8;
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214 border-spacing: 0;
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215 color: #222222;
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216 line-height: 1.3em;
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217 background-color: white;
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218 }
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219 table.descriptiontable col:first-child {
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220 width: 100%;
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221 }
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222 table.descriptiontable tr:hover {
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223 background-color: #D5DEE3;
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224 }
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225 table.descriptiontable th {
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226 color: #14376C;
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227 font-weight: normal;
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228 background-color: #F0F0F0;
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229 background: linear-gradient(#FFFFFF, #F0F0F0);
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230 border-bottom: 1px solid #D4DFE9;
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231 border-right: 1px solid #CFCFCF;
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232 border-left: 0px solid black;
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233 border-top: 0px solid black;
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234 }
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235 table.descriptiontable td {
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236 overflow: hidden;
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237 text-align: center;
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238 padding: .4em .8em;
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239 }
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240 table.descriptiontable td div {
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241 width: 1em;
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242 overflow: visible;
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243 white-space: nowrap;
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244 text-align: left;
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245 }
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246
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247
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248
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249 .alignments .white {
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250 padding: 1.5em 1em;
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251 }
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252
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253 .alignment {
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254 border-top: 1px solid black;
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255 padding-left: 1em;
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256 padding-right: 1em;
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257 }
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258
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259 div.linkheader {
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260 padding-top: .2em;
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261 font-size: 85%;
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262 color: #14376C;
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263 }
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264 div.linkheader a.linkheader {
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265 margin-right: 1em;
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266 }
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267 div.linkheader .right a {
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268 text-decoration: none;
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269 }
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270
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271 .title .hittitle {
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272 color: #222222;
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273 margin-bottom: .3em;
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274 }
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275 .title .titleinfo {
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276 font-size: 80%;
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277 margin-top: 0;
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278 margin-bottom: .3em;
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279 }
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280 .title .titleinfo .b {
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281 color: #606060;
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282 font-weight: bold;
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283 font-size: 90%;
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284 }
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285
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286 .moretitles {
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287 margin: 1.2em;
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288 }
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289 .moretitles .titleinfo {
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290 margin: 0;
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291 padding: 0;
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292 }
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293 .moretitles .hittitle {
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294 margin: .4em 0 .2em 0;
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295 padding: 0;
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296 }
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297
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298 a.showmoretitles {
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299 font-size: 75%;
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300 color: #336699;
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301 font-weight: bold;
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302 margin-top: 0;
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303 }
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diff changeset
304 a.showmoretitles:hover {
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305 }
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diff changeset
306
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diff changeset
307 .hotspot {
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diff changeset
308 color: #606060;
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diff changeset
309 font-family: verdana, arial, sans-serif;
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diff changeset
310 margin-bottom: 2.5em;
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diff changeset
311 }
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diff changeset
312
12
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diff changeset
313 .hotspot p.range {
11
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diff changeset
314 font-size: 70%;
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diff changeset
315 margin-top: 0;
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diff changeset
316 margin-top: 1em;
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317 margin-bottom: .2em;
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318 }
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319 .hotspot p.range span.range {
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320 font-weight: bold;
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321 }
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diff changeset
322 .hotspot p.range a.range {
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323 margin-left: .5em;
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324 }
11
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325
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diff changeset
326 table.hotspotstable {
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327 border-top: 1px solid;
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328 border-bottom: 1px solid;
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329 text-align: left;
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330 border-collapse: collapse;
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331 }
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diff changeset
332 table.hotspotstable th, table.hotspotstable td {
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333 padding: .1em 1em;
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334 }
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335 table.hotspotstable th {
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336 font-size: 70%;
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337 }
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338 table.hotspotstable td {
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339 min-width: 7em;
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340 color: #222222;
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341 font-size: 80%;
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diff changeset
342 }
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Jan Kanis <jan.code@jankanis.nl>
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343
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diff changeset
344 pre.alignmentgraphic {
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345 color: #222222;
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346 }
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347
23
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348 footer {
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349 text-align: center;
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350 color: #cccccc;
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351 font-size: 70%;
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352 margin-top: 1em;
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353 }
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diff changeset
354 footer :link {
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355 color: #5588cc;
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356 }
11
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diff changeset
357
5
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358 </style>
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parents:
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359
10
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diff changeset
360 <script type="text/javascript">
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diff changeset
361 function toggle_visibility(id) {
16
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diff changeset
362 var e = document.getElementById(id);
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363 if(e.style.display != 'block')
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364 e.style.display = 'block';
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Jan Kanis <jan.code@jankanis.nl>
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365 else
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366 e.style.display = 'none';
10
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367 }
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368 </script>
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369
5
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370 </head>
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371
11
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diff changeset
372
5
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373 <body>
26
eee23a36c582 add a warning if galaxy strips the html header/stylesheet
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374 <div id="strip_html_warning" style="border: 3px solid red; color: red">
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parents: 24
diff changeset
375 This html seems to have been stripped by Galaxy. Disable Galaxy's html sanitization feature to view the full page, or download this page instead of viewing it in Galaxy.
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parents: 24
diff changeset
376 </div>
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parents: 24
diff changeset
377
5
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parents:
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378 <div id=content>
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diff changeset
379
19
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diff changeset
380 {% if not blast.BlastOutput_iterations.findall('Iteration') %}
17
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381 <section class=nodata>
19
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382 <h1>No data</h1>
7
9e7927673089 intermediate commit before converting some tables to divs
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diff changeset
383 <div class=grey>
19
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diff changeset
384 No matches
7
9e7927673089 intermediate commit before converting some tables to divs
Jan Kanis <jan.code@jankanis.nl>
parents: 6
diff changeset
385 </div>
17
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parents: 16
diff changeset
386 </section>
5
1df2bfce5c24 first features are working, partial match table
Jan Kanis <jan.code@jankanis.nl>
parents:
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387
19
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diff changeset
388 {% else %}
20
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parents: 19
diff changeset
389
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diff changeset
390 {% if blast.BlastOutput_iterations.findall('Iteration') | length > 1 %}
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diff changeset
391 <section class=index>
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diff changeset
392 <h1>Queries</h1>
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diff changeset
393
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diff changeset
394 {% for result in blast.BlastOutput_iterations.Iteration %}
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parents: 19
diff changeset
395 <div class=indexentry><a href="#match{{result['Iteration_iter-num']}}">
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parents: 19
diff changeset
396 {% set hits = result|hits %}
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parents: 19
diff changeset
397 {{result['Iteration_query-ID']}}: {{result['Iteration_query-def']}}
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parents: 19
diff changeset
398 ({{result|len}} letters, {{hits|length}} hits)
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parents: 19
diff changeset
399 </a></div>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
400 {% endfor %}
21
9596fea636bb style changes
Jan Kanis <jan.code@jankanis.nl>
parents: 20
diff changeset
401
20
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
402 </section>
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
403 {% endif %}
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
404
19
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
405 {% for result in blast.BlastOutput_iterations.Iteration %}
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
406
20
53cd304c5f26 Add index for multiple results; fix layout of query ruler for edge case
Jan Kanis <jan.code@jankanis.nl>
parents: 19
diff changeset
407 <section class=match id=match{{result['Iteration_iter-num']}}>
10
2fbdf2eb27b4 All data is displayed now, still some formatting to do
Jan Kanis <jan.code@jankanis.nl>
parents: 9
diff changeset
408
19
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
409 <h1>Nucleotide Sequence ({{result|len}} letters)</h1>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
410
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
411 <section class=header>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
412
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
413 <table class=headerdata>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
414 {% for param, value in params %}
23
6995a6f34f3f fix sectioning, add footer
Jan Kanis <jan.code@jankanis.nl>
parents: 22
diff changeset
415 <tr><td class=param>{{param}}:</td><td>{{value}}</td></tr>
19
67ddcb807b7d make it work with multiple queries
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parents: 17
diff changeset
416 {% endfor %}
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
417 </table>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
418
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
419 </section>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
420
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
421 {% set hits = result|hits %}
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
422 {% if not hits %}
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
423 <section>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
424 <h2>No Hits</h2>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
425 <div class=grey>
24
c8347745bbad use Iteration_message tag; also work with unexpected Hit_id values
Jan Kanis <jan.code@jankanis.nl>
parents: 23
diff changeset
426 <table class=headerdata>
c8347745bbad use Iteration_message tag; also work with unexpected Hit_id values
Jan Kanis <jan.code@jankanis.nl>
parents: 23
diff changeset
427 <tr><td class=param>Message:</td><td>{{result.Iteration_message}}</td></tr>
c8347745bbad use Iteration_message tag; also work with unexpected Hit_id values
Jan Kanis <jan.code@jankanis.nl>
parents: 23
diff changeset
428 </table>
19
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
429 </div>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
430 </section>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
431 {% else %}
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
432
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
433 <section class=graphics>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
434 <h2>Graphic Summary</h2>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
435
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
436 <div class=grey>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
437 <h3 class=centered>Distribution of {{result|length}} Blast Hits on the Query Sequence</h3>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
438
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
439 <div class=defline id=defline{{result['Iteration_iter-num']}}>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
440 Mouse-over to show defline and scores, click to show alignments
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
441 </div>
5
1df2bfce5c24 first features are working, partial match table
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
442
19
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
443 <div class=graphic>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
444 <h4 class=darkHeader>Color key for alignment scores</h4>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
445 <div class=legend><div class=graphicrow>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
446 <div class=graphicitem style="background-color: {{colors[0]}}">&lt;40</div>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
447 <div class=graphicitem style="background-color: {{colors[1]}}">40–50</div>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
448 <div class=graphicitem style="background-color: {{colors[2]}}">50–80</div>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
449 <div class=graphicitem style="background-color: {{colors[3]}}">80–200</div>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
450 <div class=graphicitem style="background-color: {{colors[4]}}">200≤</div>
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451 </div></div>
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452 <div style="clear: left"></div>
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453
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454 <div class=tablewrapper>
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455
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456 <div class=scale>
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457 <div>query:</div>
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458 <div class=graphicrow>
20
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459 <div>
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460 {% for s in result|queryscale %}
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461 <div class=graphicitem style="width: {{s.width}}%">
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462 {% if s.width > 3.0 %}
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463 <div>{{s.label}}</div>
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464 {% else %}
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465 <div>&nbsp;</div>
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466 <div class=lastlabel>{{s.label}}</div>
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467 {% endif %}
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468 </div>
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469 {% endfor %}
19
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470 </div>
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471 </div>
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472 <div style="clear: left"></div>
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473 </div>
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474
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475 {% for line in result|match_colors %}
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476 <a class=matchresult
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477 href="{{line.link}}"
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478 onmouseover='document.getElementById("defline{{result['Iteration_iter-num']}}").innerHTML="{{line.defline|js_string_escape}}"'
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479 onmouseout='document.getElementById("defline{{result['Iteration_iter-num']}}").innerHTML="Mouse-over to show defline and scores, click to show alignments"'
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480 title="{{line.defline}}">
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481 <div class="matchrow graphicrow">
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482 {% for hit in line.colors %}
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483 <div class="matchitem graphicitem"
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484 style="background-color: {{hit[1]}}; width: {{hit[0]}}%"></div>
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485 {% endfor %}
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486 </div>
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487 </a>
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488
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489 {% endfor %}
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490 </div>
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491 </div>
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492 </div>
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493 </section>
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494
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495
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496
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497 <section class=descriptions>
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498 <h2>Descriptions</h2>
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499
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500 <div class=grey><div class=white>
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501 <h4 class=darkHeader>Sequences producing significant alignments:</h4>
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2fbdf2eb27b4 All data is displayed now, still some formatting to do
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502
19
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503 <table class=descriptiontable>
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504 <col/><col/><col/><col/><col/><col/><col/>
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505 <tr>
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506 <th>Description</th>
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507 <th>Max score</th>
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508 <th>Total score</th>
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509 <th>Query cover</th>
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510 <th>E value</th>
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511 <th>Ident</th>
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512 <th>Accession</th>
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513 </tr>
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514 {% for hit in result|hit_info %}
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515 <tr>
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516 <td><div><a href="#hit{{hit.link_id}}"
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517 title="{{hit.title}}"
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518 id="description{{hit.link_id}}">
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519 {{hit.title}}
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520 </a></div></td>
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521 <td>{{hit.maxscore}}</td>
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522 <td>{{hit.totalscore}}</td>
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523 <td>{{hit.cover}}</td>
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524 <td>{{hit.e_value}}</td>
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525 <td>{{hit.ident}}</td>
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526 <td><a href="{{genelink(hit.hit|hitid)}}">{{hit.accession}}</a></td>
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527 </tr>
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528 {% endfor %}
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529 </table>
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530
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diff changeset
531 </div></div>
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532 </section>
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533
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534
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diff changeset
535
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536 <section class=alignments>
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diff changeset
537 <h2>Alignments</h2>
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diff changeset
538
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diff changeset
539 <div class=grey><div class=white>
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diff changeset
540 {% for hit in hits %}
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diff changeset
541 <div class=alignment id=hit{{hit.Hit_num}}>
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diff changeset
542
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diff changeset
543 <div class=linkheader>
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diff changeset
544 <div class=right><a href="#description{{hit.Hit_num}}">Descriptions</a></div>
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diff changeset
545 <a class=linkheader href="{{genelink(hit|hitid)}}">GenBank</a>
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diff changeset
546 <a class=linkheader href="{{genelink(hit|hitid, 'graph')}}">Graphics</a>
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diff changeset
547 </div>
5
1df2bfce5c24 first features are working, partial match table
Jan Kanis <jan.code@jankanis.nl>
parents:
diff changeset
548
19
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diff changeset
549 <div class=title>
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diff changeset
550 <p class=hittitle>{{hit|firsttitle}}</p>
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diff changeset
551 <p class=titleinfo>
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552 <span class=b>Sequence ID:</span> <a href="{{genelink(hit|hitid)}}">{{hit|seqid}}</a>
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553 <span class=b>Length:</span> {{hit.Hit_len}}
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diff changeset
554 <span class=b>Number of Matches:</span> {{hit.Hit_hsps.Hsp|length}}
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diff changeset
555 </p>
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parents: 17
diff changeset
556 </div>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
557
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
558 {% if hit|othertitles|length %}
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diff changeset
559 <a class=showmoretitles onclick="toggle_visibility('moretitles{{hit.Hit_num|js_string_escape}}'); return false;" href=''>
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diff changeset
560 See {{hit|othertitles|length}} more title(s)
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diff changeset
561 </a>
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diff changeset
562
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diff changeset
563 <div class=moretitles id=moretitles{{hit.Hit_num}} style="display: none">
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diff changeset
564 {% for title in hit|othertitles %}
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diff changeset
565 <div class=title>
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diff changeset
566 <p class=hittitle>{{title.title}}</p>
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diff changeset
567 <p class=titleinfo>
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diff changeset
568 <span class=b>Sequence ID:</span> <a href="{{genelink(title.hitid)}}">{{title.id}}</a>
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diff changeset
569 </p>
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parents: 17
diff changeset
570 </div>
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diff changeset
571 {% endfor %}
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diff changeset
572 </div>
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diff changeset
573 {% endif %}
10
2fbdf2eb27b4 All data is displayed now, still some formatting to do
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parents: 9
diff changeset
574
19
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diff changeset
575 {% for hsp in hit.Hit_hsps.Hsp %}
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diff changeset
576 <div class=hotspot>
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diff changeset
577 <p class=range>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
578 <span class=range>Range {{hsp.Hsp_num}}: {{hsp['Hsp_hit-from']}} to {{hsp['Hsp_hit-to']}}</span>
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parents: 17
diff changeset
579 <a class=range href="{{genelink(hit|hitid, 'genbank', hsp)}}">GenBank</a>
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diff changeset
580 <a class=range href="{{genelink(hit|hitid, 'graph', hsp)}}">Graphics</a>
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parents: 17
diff changeset
581 </p>
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parents: 17
diff changeset
582
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
583 <table class=hotspotstable>
67ddcb807b7d make it work with multiple queries
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parents: 17
diff changeset
584 <tr>
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diff changeset
585 <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th>
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diff changeset
586 </tr>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
587 <tr>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
588 <td>{{hsp['Hsp_bit-score']|fmt('.1f')}} bits({{hsp.Hsp_score}})</td>
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Jan Kanis <jan.code@jankanis.nl>
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diff changeset
589 <td>{{hsp.Hsp_evalue|fmt('.1f')}}</td>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
590 <td>{{ hsp.Hsp_identity }}/{{ hsp|len }}({{
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
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diff changeset
591 (hsp.Hsp_identity/hsp|len) |fmt('.0%') }})</td>
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parents: 17
diff changeset
592 <td>{{ hsp.Hsp_gaps }}/{{ hsp|len
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
593 }}({{ (hsp.Hsp_gaps / hsp|len) | fmt('.0%') }})</td>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
594 <td>{{ hsp['Hsp_query-frame']|asframe }}/{{ hsp['Hsp_hit-frame']|asframe }}</td>
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Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
595 </tr>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
diff changeset
596 </table>
67ddcb807b7d make it work with multiple queries
Jan Kanis <jan.code@jankanis.nl>
parents: 17
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597
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598 <pre class=alignmentgraphic>{{hsp|alignment_pre}}</pre>
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599 </div>
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600 {% endfor %}
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601
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602 </div>
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603
19
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604 {% endfor %}
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605 </div></div>
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606 </section>
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607 {% endif %}
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608 </section>
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609 {% endfor %}
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610 {% endif %}
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611
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612 </div>
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613
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614 <footer>
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615 This page was generated by <a href="...">blast2html</a>.
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616 </footer>
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617 </body>
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618 </html>
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619
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620 {#
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621 Local Variables:
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622 tab-width: 2
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623 indent-tabs-mode: nil
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624 End:
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625 #}