Mercurial > repos > jankanis > blast2html

annotate blast2html.xml @ 68:fa8a93bdefd7

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fix bug in calculations of alignment end
author Jan Kanis <jan.code@jankanis.nl>
date Wed, 18 Jun 2014 12:25:37 +0200
parents e3dd39906eef
children 3338571b44cd
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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1 <tool id="blast2html" name="blast2html" version="0.0.9">
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2
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3 <description>Convert BLAST XML to HTML</description>
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4
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5 <requirements>
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6 <requirement name="package" version="0.1">blast2html_venv</requirement>
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7 </requirements>
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8
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9 <command interpreter="python3">blast2html.py -i "${input}" -o "${output}"</command>
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11 <stdio>
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12 <!-- Any exit code other than 0 is an error -->
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13 <exit_code range="1:" />
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14 <exit_code range=":-1" />
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15 </stdio>
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17 <inputs>
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18 <param format="blastxml" name="input" type="data" label="Source file"/>
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19 </inputs>
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21 <outputs>
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22 <data format="html" name="output" />
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23 </outputs>
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25 <tests>
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26 <test>
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27 <param name="input" value="blast xml example1.xml"/>
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28 <output name="out_file1" file="blast xml example1.html"/>
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29 </test>
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30 <test>
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31 <param name="input" value="blast xml example2.xml"/>
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32 <output name="out_file1" file="blast xml example2.html"/>
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33 </test>
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34 <test>
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35 <param name="input" value="blast xml example3.xml"/>
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36 <output name="out_file1" file="blast xml example3.html"/>
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37 </test>
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38 <test>
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39 <param name="input" value="blast xml example4.xml"/>
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40 <output name="out_file1" file="blast xml example4.html"/>
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41 </test>
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42 </tests>
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43
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44 <help>
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45 This tool converts the default BLAST XML result into a HTML document
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46 </help>
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48 </tool>