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comparison tool_dependencies.xml @ 57:159989f6bfa6

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depend on new python3; set LD_LIBRARY_PATH
author Jan Kanis <jan.code@jankanis.nl>
date Mon, 26 May 2014 15:34:54 +0200
parents c0c4f52ca313
children 39df29f647e8
comparison
equal deleted inserted replaced
56:d2fb88c1e866 57:159989f6bfa6
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="cython" version="0.20.1">
4 <repository name="package_cython_0_20_1" owner="iuc" prior_installation_required="True"
5 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="c3a8c46fcb97" />
6 </package>
7
8 <package name="libxml2" version="2.9.1"> 3 <package name="libxml2" version="2.9.1">
9 <repository name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True" 4 <repository name="package_libxml2_2_9_1" owner="devteam" prior_installation_required="True"
10 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="3af7ad13a6fb" /> 5 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="3af7ad13a6fb" />
11 </package> 6 </package>
12 7
15 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee" /> 10 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee" />
16 </package> 11 </package>
17 12
18 <package name="python3" version="3.4.1"> 13 <package name="python3" version="3.4.1">
19 <repository name="package_python3_4" owner="jankanis" prior_installation_required="True" 14 <repository name="package_python3_4" owner="jankanis" prior_installation_required="True"
20 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="9dbfc4fcef0a" /> 15 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="59b33d253163" />
21 </package> 16 </package>
22 17
23 <package name="blast2html_venv" version="0.1"> 18 <package name="blast2html_venv" version="0.1">
24 <install version="1.0"> 19 <install version="1.0">
25 <actions> 20 <actions>
26 <action type="set_environment_for_install"> 21 <action type="set_environment_for_install">
27 <repository name="package_cython_0_20_1" owner="iuc"
28 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="c3a8c46fcb97">
29 <package name="cython" version="0.20.1" />
30 </repository>
31 <repository name="package_libxml2_2_9_1" owner="devteam" 22 <repository name="package_libxml2_2_9_1" owner="devteam"
32 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="3af7ad13a6fb"> 23 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="3af7ad13a6fb">
33 <package name="libxml2" version="2.9.1" /> 24 <package name="libxml2" version="2.9.1" />
34 </repository> 25 </repository>
35 <repository name="package_libxslt_1_1_28" owner="devteam" 26 <repository name="package_libxslt_1_1_28" owner="devteam"
36 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee"> 27 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="039b04adcfee">
37 <package name="libxslt" version="1.1.28" /> 28 <package name="libxslt" version="1.1.28" />
38 </repository> 29 </repository>
39 <repository name="package_python3_4" owner="jankanis" 30 <repository name="package_python3_4" owner="jankanis"
40 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="9dbfc4fcef0a"> 31 toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="59b33d253163">
41 <package name="python3" version="3.4.1" /> 32 <package name="python3" version="3.4.1" />
42 </repository> 33 </repository>
43 </action> 34 </action>
44 35
45 <action type="shell_command"> 36 <action type="shell_command">
52 pip3 install lxml jinja2 43 pip3 install lxml jinja2
53 </action> 44 </action>
54 45
55 <action type="set_environment"> 46 <action type="set_environment">
56 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python3.4/site-packages</environment_variable> 47 <environment_variable name="PYTHONPATH" action="prepend_to">$INSTALL_DIR/lib/python3.4/site-packages</environment_variable>
48 <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LD_LIBRARY_PATH]</environment_variable>
57 </action> 49 </action>
58 </actions> 50 </actions>
59 </install> 51 </install>
60 <readme>A Python 3 virtual environment that includes the python packages blast2html depends on, which are lxml and jinja2.</readme> 52 <readme>A Python 3 virtual environment that includes the python packages blast2html depends on, which are lxml and jinja2.</readme>
61 </package> 53 </package>