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comparison Blast output page example trimmed.html @ 4:34211f5b83fd

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trim everything that can be without breaking the graphics summary
author Jan Kanis <jan.code@jankanis.nl>
date Tue, 06 May 2014 17:52:14 +0200
parents 9a8ac57e5680
children
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3:9a8ac57e5680 4:34211f5b83fd
396 <div id="graphic" class="hidden shown"> 396 <div id="graphic" class="hidden shown">
397 <h3>Distribution of 45 Blast Hits on the Query Sequence 397 <h3>Distribution of 45 Blast Hits on the Query Sequence
398 <a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" title="Graphic summary help" id="grHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span> 398 <a aria-expanded="false" role="button" aria-disabled="false" class="helplink jig-ncbitoggler ui-ncbitoggler ui-widget" title="Graphic summary help" id="grHelp" href="#"><span class="ui-ncbitoggler-master-text"><span>[?]</span></span>
399 <span class="ui-icon ui-icon-triangle-1-e"></span></a></h3> 399 <span class="ui-icon ui-icon-triangle-1-e"></span></a></h3>
400 <div class="ui-helper-reset" aria-live="assertive"> 400 <div class="ui-helper-reset" aria-live="assertive">
401 <p aria-hidden="true" id="ovrInfo" class="helpbox ui-ncbitoggler-slave ui-ncbitoggler"> 401 </div>
402 An overview of the database sequences aligned to the query sequence is
403 shown. The score of each alignment is indicated by one of five
404 different colors, which divides the range of scores into five groups.
405 Multiple alignments on the same database sequence are connected
406 by a striped line. <span class="hl">Mousing over</span> a hit sequence causes the definition and score to be shown in the window at the top,
407 <span class="hl">clicking</span> on a hit sequence takes the user to the associated alignments.
408 New:
409 This graphic is an overview of database sequences aligned to the query sequence.
410 Alignments are color-coded by score, within one of five score ranges.
411 Multiple alignments on the same database sequence are connected by a dashed line.
412 <span class="hl">Mousing</span> over an alignment shows the alignment definition and score in the box at the top.
413 <span class="hl">Clicking</span> an alignment displays the alignment detail.
414 </p>
415 </div><!-- ARIA -->
416 <center><input name="defline" size="85" value="Mouse-over to show defline and scores, click to show alignments" type="text"><table bordercolordark="#0000FF" bordercolorlight="#0000FF" border="1" cellpadding="10" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td> 402 <center><input name="defline" size="85" value="Mouse-over to show defline and scores, click to show alignments" type="text"><table bordercolordark="#0000FF" bordercolorlight="#0000FF" border="1" cellpadding="10" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="50"></td>
417 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/score.gif" height="40" width="500"></td> 403 <td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/score.gif" height="40" width="500"></td>
418 </tr></tbody></table> 404 </tr></tbody></table>
419 <table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/query_no_scale.gif" height="10" width="550"></td></tr></tbody></table> 405 <table border="0" cellpadding="0" cellspacing="1"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/query_no_scale.gif" height="10" width="550"></td></tr></tbody></table>
420 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="51"></td> 406 <table border="0" cellpadding="0" cellspacing="0"><tbody><tr><td align="LEFT" valign="CENTER"><img alt="" src="Blast%20output%20page%20example%20trimmed_files/white.gif" height="4" width="51"></td>
514 </a> 500 </a>
515 </h2> 501 </h2>
516 <div class="ui-helper-reset" aria-live="assertive"> 502 <div class="ui-helper-reset" aria-live="assertive">
517 <div aria-hidden="false" id="descrInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler"> 503 <div aria-hidden="false" id="descrInfo" class="resBox ui-ncbitoggler-slave-open ui-widget ui-ncbitoggler">
518 <!-- legend to links to other resources --> 504 <!-- legend to links to other resources -->
519 <a name="sort_mark"></a> 505
520 506
521
522 <div id="debug">, Reading indexes 1-5, displaying indexes 1-5</div>
523 <input id="Rid" value="PHWP1JNZ014" type="hidden">
524 <input id="useAlignDB" name="useAlignDB" value="" type="hidden">
525 <input id="dbType" value="GenBank" type="hidden"><!-- Indicates genbank, etc -->
526 <input id="serviceType" value="plain" type="hidden">
527 <input id="clientType" value="web" type="hidden">
528 <input id="currQuery" value="" type="hidden">
529 <input id="minDispAlnLen" value="2000" type="hidden">
530 <input id="maxDispAlnLen" value="20000" type="hidden">
531 <div class="hidden" id="dynHspTmpl"><div class="alnParLinks moreHsps" id="@moreHspsID@"><a class="gbd toolsCtr navNext" title="Load matches @segs@ out of @totalHSP@ for @accs@" onmouseover="scan(this)" ref="range=@segs@&amp;currseq=@alnSeqGi@" onclick="ReadNextHSPSet(@argstring@);"><span>Load next set</span></a><a class="gbd toolsCtr navPrev" title="Go to previous match #@aln_prev_num@ for @accs@" onclick="goToNextHSP(this,false)"><span>Previous Match</span></a></div></div>
532 <div id="descriptions" class="blRes"> 507 <div id="descriptions" class="blRes">
533 <!--<pre> --> 508 <!--<pre> -->
534 <div class="cap">Sequences producing significant alignments:</div> 509 <div class="cap">Sequences producing significant alignments:</div>
535 <a id="shcl" href="#" onclick="showAllCol(event,this)" class="shcl hidden"> 510 <a id="shcl" href="#" onclick="showAllCol(event,this)" class="shcl hidden">
536 Show all columns <span class="accsb"> of the table presenting sequences producing significant alignments </span> 511 Show all columns <span class="accsb"> of the table presenting sequences producing significant alignments </span>
542 517
543 <div id="descTblCtrl" class="cnf"> 518 <div id="descTblCtrl" class="cnf">
544 <a href="#alignInfo" id="alnNav" class="toolsCtr alnNav" title="Go to alignments"><span>Alignments</span></a> 519 <a href="#alignInfo" id="alnNav" class="toolsCtr alnNav" title="Go to alignments"><span>Alignments</span></a>
545 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dsDownload" minslct="1" class="jig-ncbipopper toolsCtr dnld dialog " data-jigconfig="hasArrow:'true',arrowDirection:'top'" id="dscDwnld" disabled="disabled" title="Download information for selected sequences"><span>Download</span></a> 520 <a aria-haspopup="true" aria-expanded="false" role="button" href="#dsDownload" minslct="1" class="jig-ncbipopper toolsCtr dnld dialog " data-jigconfig="hasArrow:'true',arrowDirection:'top'" id="dscDwnld" disabled="disabled" title="Download information for selected sequences"><span>Download</span></a>
546 521
547 <div style="top: -100px; left: -100px; display: none;" aria-hidden="true" aria-live="assertive" id="dsDownload" class="popDl ui-helper-reset ui-ncbipopper-wrapper ui-ncbipopper-basic">
548 <div class=""><input name="dwn" checked="checked" id="dwFST" fstadwtype="complete" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFST">FASTA (complete sequence)</label></div>
549 <div class=""><input name="dwn" id="dwFSTAl" fstadwtype="range" sbfunc="initDownLoadFSTA" type="radio"><label class="shownInl" for="dwFSTAl">FASTA (aligned sequences)</label></div>
550 <div class=""><input name="dwn" id="dwGenBank" getgi="on" sbname="id" url="http://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=nuccore&amp;rettype=gb&amp;retmode=text" type="radio"><label class=" shownInl" for="dwGenBank">GenBank (complete sequence)</label></div>
551 <div><input name="dwn" id="dwHitText" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=Text&amp;FORMAT_OBJECT=Alignment&amp;ALIGNMENT_VIEW=Tabular&amp;CMD=Get" type="radio"><label class="shownInl" for="dwHitText">Hit Table (text)</label></div>
552 <div><input name="dwn" id="dwHitCsv" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=CSV&amp;FORMAT_OBJECT=Alignment&amp;ALIGNMENT_VIEW=Tabular&amp;CMD=Get" type="radio"><label class="shownInl" for="dwHitCsv">Hit Table (CSV)</label></div>
553 <div><input name="dwn" id="dwText" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=Text&amp;FORMAT_OBJECT=Alignment&amp;CMD=Get" type="radio"><label class="shownInl" for="dwText">Text</label></div>
554 <div><input name="dwn" id="dwXML" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=XML&amp;FORMAT_OBJECT=Alignment&amp;CMD=Get" type="radio"><label class="shownInl" for="dwXML">XML</label></div>
555 <div><input name="dwn" id="dwASN" url="Blast.cgi?RESULTS_FILE=on&amp;RID=PHWP1JNZ014&amp;FORMAT_TYPE=ASN.1&amp;FORMAT_OBJECT=Alignment&amp;CMD=Get" type="radio"><label class="shownInl" for="dwASN">ASN.1</label></div>
556 <div>
557 <button class="cfg" id="dw_cont">Continue</button>
558 <button class="cfg cnc">Cancel</button>
559 </div>
560 </div> <!-- dsDownload -->
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