Mercurial > repos > jankanis > blast2html
comparison example_xmls/blast xml example2.xml @ 25:b77934f57522
add more example xmls, move them to a subdirectory
author | Jan Kanis <jan.code@jankanis.nl> |
---|---|
date | Thu, 15 May 2014 12:24:02 +0200 |
parents | blast xml example2.xml@bad241dc701f |
children |
comparison
equal
deleted
inserted
replaced
24:c8347745bbad | 25:b77934f57522 |
---|---|
1 <?xml version="1.0"?> | |
2 <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> | |
3 <BlastOutput> | |
4 <BlastOutput_program>blastn</BlastOutput_program> | |
5 <BlastOutput_version>BLASTN 2.2.28+</BlastOutput_version> | |
6 <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> | |
7 <BlastOutput_db>/share/BlastDB/nt</BlastOutput_db> | |
8 <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> | |
9 <BlastOutput_query-def>No definition line</BlastOutput_query-def> | |
10 <BlastOutput_query-len>16</BlastOutput_query-len> | |
11 <BlastOutput_param> | |
12 <Parameters> | |
13 <Parameters_expect>0.001</Parameters_expect> | |
14 <Parameters_sc-match>2</Parameters_sc-match> | |
15 <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> | |
16 <Parameters_gap-open>5</Parameters_gap-open> | |
17 <Parameters_gap-extend>2</Parameters_gap-extend> | |
18 <Parameters_filter>L;m;</Parameters_filter> | |
19 </Parameters> | |
20 </BlastOutput_param> | |
21 <BlastOutput_iterations> | |
22 <Iteration> | |
23 <Iteration_iter-num>1</Iteration_iter-num> | |
24 <Iteration_query-ID>Query_1</Iteration_query-ID> | |
25 <Iteration_query-def>No definition line</Iteration_query-def> | |
26 <Iteration_query-len>16</Iteration_query-len> | |
27 <Iteration_hits> | |
28 </Iteration_hits> | |
29 <Iteration_stat> | |
30 <Statistics> | |
31 <Statistics_db-num>28813188</Statistics_db-num> | |
32 <Statistics_db-len>53027764389</Statistics_db-len> | |
33 <Statistics_hsp-len>13</Statistics_hsp-len> | |
34 <Statistics_eff-space>157959578835</Statistics_eff-space> | |
35 <Statistics_kappa>0.41</Statistics_kappa> | |
36 <Statistics_lambda>0.625</Statistics_lambda> | |
37 <Statistics_entropy>0.78</Statistics_entropy> | |
38 </Statistics> | |
39 </Iteration_stat> | |
40 <Iteration_message>No hits found</Iteration_message> | |
41 </Iteration> | |
42 </BlastOutput_iterations> | |
43 </BlastOutput> | |
44 |