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comparison test-data/blast xml example4.html @ 98:e780606b7c25

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test new command line parameters, fix small bug
author Jan Kanis <jan.code@jankanis.nl>
date Mon, 30 Jun 2014 17:51:56 +0200
parents 8b3c5d334a84
children b3b5ee557170
comparison
equal deleted inserted replaced
97:8b3c5d334a84 98:e780606b7c25
555 <td>40.1</td> 555 <td>40.1</td>
556 <td>40.1</td> 556 <td>40.1</td>
557 <td>100%</td> 557 <td>100%</td>
558 <td>1.513e-07</td> 558 <td>1.513e-07</td>
559 <td>100%</td> 559 <td>100%</td>
560 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">5</a></td> 560 <td><a href="http://example.com/example-genebank/AB209952.1/">5</a></td>
561 </tr> 561 </tr>
562 <tr> 562 <tr>
563 <td><div><a href="#hit1-2" 563 <td><div><a href="#hit1-2"
564 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000" 564 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
565 id="description1-2"> 565 id="description1-2">
568 <td>40.1</td> 568 <td>40.1</td>
569 <td>40.1</td> 569 <td>40.1</td>
570 <td>100%</td> 570 <td>100%</td>
571 <td>1.513e-07</td> 571 <td>1.513e-07</td>
572 <td>100%</td> 572 <td>100%</td>
573 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">2</a></td> 573 <td><a href="http://example.com/example-genebank/DJ437711/">2</a></td>
574 </tr> 574 </tr>
575 </table> 575 </table>
576 576
577 </div></div> 577 </div></div>
578 </section> 578 </section>
585 <div class=grey><div class=white> 585 <div class=grey><div class=white>
586 <div class=alignment id=hit1-1> 586 <div class=alignment id=hit1-1>
587 587
588 <div class=linkheader> 588 <div class=linkheader>
589 <div class=right><a href="#description1-1">Descriptions</a></div> 589 <div class=right><a href="#description1-1">Descriptions</a></div>
590 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">Gene Bank</a> 590 <a class="linkheader" href="http://example.com/example-genebank/AB209952.1/">Gene Bank</a>
591 </div> 591 </div>
592 592
593 <div class=title> 593 <div class=title>
594 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> 594 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
595 <p class=titleinfo> 595 <p class=titleinfo>
596 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|5</a> 596 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a>
597 <span class=b>Length:</span> 2457 597 <span class=b>Length:</span> 2457
598 <span class=b>Number of Matches:</span> 1 598 <span class=b>Number of Matches:</span> 1
599 </p> 599 </p>
600 </div> 600 </div>
601 601
627 627
628 <div class=alignment id=hit1-2> 628 <div class=alignment id=hit1-2>
629 629
630 <div class=linkheader> 630 <div class=linkheader>
631 <div class=right><a href="#description1-2">Descriptions</a></div> 631 <div class=right><a href="#description1-2">Descriptions</a></div>
632 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">Gene Bank</a> 632 <a class="linkheader" href="http://example.com/example-genebank/DJ437711/">Gene Bank</a>
633 </div> 633 </div>
634 634
635 <div class=title> 635 <div class=title>
636 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> 636 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
637 <p class=titleinfo> 637 <p class=titleinfo>
638 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|2</a> 638 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a>
639 <span class=b>Length:</span> 323 639 <span class=b>Length:</span> 323
640 <span class=b>Number of Matches:</span> 1 640 <span class=b>Number of Matches:</span> 1
641 </p> 641 </p>
642 </div> 642 </div>
643 643
844 <td>40.1</td> 844 <td>40.1</td>
845 <td>40.1</td> 845 <td>40.1</td>
846 <td>100%</td> 846 <td>100%</td>
847 <td>1.513e-07</td> 847 <td>1.513e-07</td>
848 <td>100%</td> 848 <td>100%</td>
849 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">5</a></td> 849 <td><a href="http://example.com/example-genebank/AB209952.1/">5</a></td>
850 </tr> 850 </tr>
851 <tr> 851 <tr>
852 <td><div><a href="#hit3-2" 852 <td><div><a href="#hit3-2"
853 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000" 853 title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"
854 id="description3-2"> 854 id="description3-2">
857 <td>40.1</td> 857 <td>40.1</td>
858 <td>40.1</td> 858 <td>40.1</td>
859 <td>100%</td> 859 <td>100%</td>
860 <td>1.513e-07</td> 860 <td>1.513e-07</td>
861 <td>100%</td> 861 <td>100%</td>
862 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">2</a></td> 862 <td><a href="http://example.com/example-genebank/DJ437711/">2</a></td>
863 </tr> 863 </tr>
864 <tr> 864 <tr>
865 <td><div><a href="#hit3-3" 865 <td><div><a href="#hit3-3"
866 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000" 866 title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000"
867 id="description3-3"> 867 id="description3-3">
870 <td>34.2</td> 870 <td>34.2</td>
871 <td>34.2</td> 871 <td>34.2</td>
872 <td>85%</td> 872 <td>85%</td>
873 <td>9.334e-06</td> 873 <td>9.334e-06</td>
874 <td>100%</td> 874 <td>100%</td>
875 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&amp;log$=nuclalign">1</a></td> 875 <td><a href="http://example.com/example-genebank/AJ308515.1/">1</a></td>
876 </tr> 876 </tr>
877 </table> 877 </table>
878 878
879 </div></div> 879 </div></div>
880 </section> 880 </section>
887 <div class=grey><div class=white> 887 <div class=grey><div class=white>
888 <div class=alignment id=hit3-1> 888 <div class=alignment id=hit3-1>
889 889
890 <div class=linkheader> 890 <div class=linkheader>
891 <div class=right><a href="#description3-1">Descriptions</a></div> 891 <div class=right><a href="#description3-1">Descriptions</a></div>
892 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">Gene Bank</a> 892 <a class="linkheader" href="http://example.com/example-genebank/AB209952.1/">Gene Bank</a>
893 </div> 893 </div>
894 894
895 <div class=title> 895 <div class=title>
896 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> 896 <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p>
897 <p class=titleinfo> 897 <p class=titleinfo>
898 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|5</a> 898 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a>
899 <span class=b>Length:</span> 2457 899 <span class=b>Length:</span> 2457
900 <span class=b>Number of Matches:</span> 1 900 <span class=b>Number of Matches:</span> 1
901 </p> 901 </p>
902 </div> 902 </div>
903 903
929 929
930 <div class=alignment id=hit3-2> 930 <div class=alignment id=hit3-2>
931 931
932 <div class=linkheader> 932 <div class=linkheader>
933 <div class=right><a href="#description3-2">Descriptions</a></div> 933 <div class=right><a href="#description3-2">Descriptions</a></div>
934 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">Gene Bank</a> 934 <a class="linkheader" href="http://example.com/example-genebank/DJ437711/">Gene Bank</a>
935 </div> 935 </div>
936 936
937 <div class=title> 937 <div class=title>
938 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> 938 <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p>
939 <p class=titleinfo> 939 <p class=titleinfo>
940 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|2</a> 940 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a>
941 <span class=b>Length:</span> 323 941 <span class=b>Length:</span> 323
942 <span class=b>Number of Matches:</span> 1 942 <span class=b>Number of Matches:</span> 1
943 </p> 943 </p>
944 </div> 944 </div>
945 945
971 971
972 <div class=alignment id=hit3-3> 972 <div class=alignment id=hit3-3>
973 973
974 <div class=linkheader> 974 <div class=linkheader>
975 <div class=right><a href="#description3-3">Descriptions</a></div> 975 <div class=right><a href="#description3-3">Descriptions</a></div>
976 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&amp;log$=nuclalign">Gene Bank</a> 976 <a class="linkheader" href="http://example.com/example-genebank/AJ308515.1/">Gene Bank</a>
977 </div> 977 </div>
978 978
979 <div class=title> 979 <div class=title>
980 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000</p> 980 <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3&#39;UTR/plant_junction_region.|-9105899556052450000</p>
981 <p class=titleinfo> 981 <p class=titleinfo>
982 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|1</a> 982 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AJ308515.1/">gnl|BL_ORD_ID|1</a>
983 <span class=b>Length:</span> 1045 983 <span class=b>Length:</span> 1045
984 <span class=b>Number of Matches:</span> 1 984 <span class=b>Number of Matches:</span> 1
985 </p> 985 </p>
986 </div> 986 </div>
987 987
1202 <td>36.2</td> 1202 <td>36.2</td>
1203 <td>36.2</td> 1203 <td>36.2</td>
1204 <td>88%</td> 1204 <td>88%</td>
1205 <td>3.148e-06</td> 1205 <td>3.148e-06</td>
1206 <td>95%</td> 1206 <td>95%</td>
1207 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">7</a></td> 1207 <td><a href="http://example.com/example-genebank/EUG/">7</a></td>
1208 </tr> 1208 </tr>
1209 <tr> 1209 <tr>
1210 <td><div><a href="#hit6-2" 1210 <td><div><a href="#hit6-2"
1211 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000" 1211 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
1212 id="description6-2"> 1212 id="description6-2">
1215 <td>36.2</td> 1215 <td>36.2</td>
1216 <td>36.2</td> 1216 <td>36.2</td>
1217 <td>88%</td> 1217 <td>88%</td>
1218 <td>3.148e-06</td> 1218 <td>3.148e-06</td>
1219 <td>95%</td> 1219 <td>95%</td>
1220 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">6</a></td> 1220 <td><a href="http://example.com/example-genebank/AY326434/">6</a></td>
1221 </tr> 1221 </tr>
1222 </table> 1222 </table>
1223 1223
1224 </div></div> 1224 </div></div>
1225 </section> 1225 </section>
1232 <div class=grey><div class=white> 1232 <div class=grey><div class=white>
1233 <div class=alignment id=hit6-1> 1233 <div class=alignment id=hit6-1>
1234 1234
1235 <div class=linkheader> 1235 <div class=linkheader>
1236 <div class=right><a href="#description6-1">Descriptions</a></div> 1236 <div class=right><a href="#description6-1">Descriptions</a></div>
1237 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">Gene Bank</a> 1237 <a class="linkheader" href="http://example.com/example-genebank/EUG/">Gene Bank</a>
1238 </div> 1238 </div>
1239 1239
1240 <div class=title> 1240 <div class=title>
1241 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> 1241 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
1242 <p class=titleinfo> 1242 <p class=titleinfo>
1243 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|7</a> 1243 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a>
1244 <span class=b>Length:</span> 4983 1244 <span class=b>Length:</span> 4983
1245 <span class=b>Number of Matches:</span> 1 1245 <span class=b>Number of Matches:</span> 1
1246 </p> 1246 </p>
1247 </div> 1247 </div>
1248 1248
1274 1274
1275 <div class=alignment id=hit6-2> 1275 <div class=alignment id=hit6-2>
1276 1276
1277 <div class=linkheader> 1277 <div class=linkheader>
1278 <div class=right><a href="#description6-2">Descriptions</a></div> 1278 <div class=right><a href="#description6-2">Descriptions</a></div>
1279 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">Gene Bank</a> 1279 <a class="linkheader" href="http://example.com/example-genebank/AY326434/">Gene Bank</a>
1280 </div> 1280 </div>
1281 1281
1282 <div class=title> 1282 <div class=title>
1283 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> 1283 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
1284 <p class=titleinfo> 1284 <p class=titleinfo>
1285 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|6</a> 1285 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a>
1286 <span class=b>Length:</span> 4180 1286 <span class=b>Length:</span> 4180
1287 <span class=b>Number of Matches:</span> 1 1287 <span class=b>Number of Matches:</span> 1
1288 </p> 1288 </p>
1289 </div> 1289 </div>
1290 1290
1453 <td>67.9</td> 1453 <td>67.9</td>
1454 <td>67.9</td> 1454 <td>67.9</td>
1455 <td>100%</td> 1455 <td>100%</td>
1456 <td>3.564e-15</td> 1456 <td>3.564e-15</td>
1457 <td>86%</td> 1457 <td>86%</td>
1458 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">7</a></td> 1458 <td><a href="http://example.com/example-genebank/EUG/">7</a></td>
1459 </tr> 1459 </tr>
1460 <tr> 1460 <tr>
1461 <td><div><a href="#hit7-2" 1461 <td><div><a href="#hit7-2"
1462 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000" 1462 title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"
1463 id="description7-2"> 1463 id="description7-2">
1466 <td>67.9</td> 1466 <td>67.9</td>
1467 <td>67.9</td> 1467 <td>67.9</td>
1468 <td>100%</td> 1468 <td>100%</td>
1469 <td>3.564e-15</td> 1469 <td>3.564e-15</td>
1470 <td>86%</td> 1470 <td>86%</td>
1471 <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">6</a></td> 1471 <td><a href="http://example.com/example-genebank/AY326434/">6</a></td>
1472 </tr> 1472 </tr>
1473 </table> 1473 </table>
1474 1474
1475 </div></div> 1475 </div></div>
1476 </section> 1476 </section>
1483 <div class=grey><div class=white> 1483 <div class=grey><div class=white>
1484 <div class=alignment id=hit7-1> 1484 <div class=alignment id=hit7-1>
1485 1485
1486 <div class=linkheader> 1486 <div class=linkheader>
1487 <div class=right><a href="#description7-1">Descriptions</a></div> 1487 <div class=right><a href="#description7-1">Descriptions</a></div>
1488 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">Gene Bank</a> 1488 <a class="linkheader" href="http://example.com/example-genebank/EUG/">Gene Bank</a>
1489 </div> 1489 </div>
1490 1490
1491 <div class=title> 1491 <div class=title>
1492 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> 1492 <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p>
1493 <p class=titleinfo> 1493 <p class=titleinfo>
1494 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|7</a> 1494 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a>
1495 <span class=b>Length:</span> 4983 1495 <span class=b>Length:</span> 4983
1496 <span class=b>Number of Matches:</span> 1 1496 <span class=b>Number of Matches:</span> 1
1497 </p> 1497 </p>
1498 </div> 1498 </div>
1499 1499
1528 1528
1529 <div class=alignment id=hit7-2> 1529 <div class=alignment id=hit7-2>
1530 1530
1531 <div class=linkheader> 1531 <div class=linkheader>
1532 <div class=right><a href="#description7-2">Descriptions</a></div> 1532 <div class=right><a href="#description7-2">Descriptions</a></div>
1533 <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">Gene Bank</a> 1533 <a class="linkheader" href="http://example.com/example-genebank/AY326434/">Gene Bank</a>
1534 </div> 1534 </div>
1535 1535
1536 <div class=title> 1536 <div class=title>
1537 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> 1537 <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p>
1538 <p class=titleinfo> 1538 <p class=titleinfo>
1539 <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&amp;log$=nuclalign">gnl|BL_ORD_ID|6</a> 1539 <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a>
1540 <span class=b>Length:</span> 4180 1540 <span class=b>Length:</span> 4180
1541 <span class=b>Number of Matches:</span> 1 1541 <span class=b>Number of Matches:</span> 1
1542 </p> 1542 </p>
1543 </div> 1543 </div>
1544 1544