Mercurial > repos > jankanis > blast2html
diff blast2html.xml @ 35:2b23b4a4d88e
fix tool xml file name
author | Jan Kanis <jan.code@jankanis.nl> |
---|---|
date | Thu, 15 May 2014 18:15:04 +0200 |
parents | tool_dependencies.xml@5d7a82f49485 |
children | 0f015cb32b93 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/blast2html.xml Thu May 15 18:15:04 2014 +0200 @@ -0,0 +1,43 @@ +<tool id="blast2html" name="blast2html" version="0.0.2"> + + <description>Convert BLAST XML to HTML</description> + + <requirements> + <requirement type="python-module">jinja2</requirement> + <requirement type="python-module">lxml</requirement> + </requirements> + + <command interpreter="python">blast2html.py -i "${input}" -o "${output}"</command> + + <inputs> + <param format="blast" name="input" type="data" label="Source file"/> + </inputs> + + <outputs> + <data format="html" name="output" /> + </outputs> + + <tests> + <test> + <param name="input" value="blast xml example1.xml"/> + <output name="out_file1" file="blast xml example1.html"/> + </test> + <test> + <param name="input" value="blast xml example2.xml"/> + <output name="out_file1" file="blast xml example2.html"/> + </test> + <test> + <param name="input" value="blast xml example3.xml"/> + <output name="out_file1" file="blast xml example3.html"/> + </test> + <test> + <param name="input" value="blast xml example4.xml"/> + <output name="out_file1" file="blast xml example4.html"/> + </test> + </tests> + + <help> + This tool converts the default BLAST XML result into a HTML document + </help> + +</tool>