Mercurial > repos > jankanis > blast2html

diff blast2html.py @ 119:591dc9c24824

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tentative fix for Rikilt issue 10: don't sort hits ourselves but use blastxml ordering
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 31 Jul 2014 13:26:34 +0200
parents 7f3f8c10f44b
children 2729c2326235
line wrap: on
line diff
--- a/blast2html.py	Thu Jul 31 13:09:30 2014 +0200
+++ b/blast2html.py	Thu Jul 31 13:26:34 2014 +0200
@@ -219,10 +219,8 @@
 
 @filter
 def hits(result):
-    # sort hits by longest hotspot first
-    return sorted(result.Iteration_hits.findall('Hit'),
-                  key=lambda h: max(blastxml_len(hsp) for hsp in h.Hit_hsps.Hsp),
-                  reverse=True)
+    # Use findall so we get an empty list if there are no Hit elements at all
+    return result.Iteration_hits.findall('Hit')
 
 @filter('params')
 def result_params(iteration):