Mercurial > repos > jankanis > blast2html
diff test-data/blast xml example4.html @ 118:7f3f8c10f44b
fix for Rikilt issues 8, 11, 12, 14
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Thu, 31 Jul 2014 13:09:30 +0200 |
| parents | 4f0ed3b5ae46 |
| children |
line wrap: on
line diff
--- a/test-data/blast xml example4.html Thu Jul 31 14:55:07 2014 +0200 +++ b/test-data/blast xml example4.html Thu Jul 31 13:09:30 2014 +0200 @@ -473,7 +473,7 @@ <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> - <div class=graphicitem style="background-color: red">200≤</div> + <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> @@ -575,7 +575,7 @@ <td>100%</td> <td>1.513e-07</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">5</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">5</a></td> </tr> <tr> <td><div><a href="#hit1-2" @@ -588,7 +588,7 @@ <td>100%</td> <td>1.513e-07</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">2</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">2</a></td> </tr> </table> @@ -605,13 +605,13 @@ <div class=linkheader> <div class=right><a href="#description1-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|5</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|5</a> <span class=b>Length:</span> 2457 <span class=b>Number of Matches:</span> 1 </p> @@ -628,10 +628,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>40.1 bits(20)</td> - <td>0.0</td> - <td>20/20(100%)</td> - <td>0/20(0%)</td> + <td>40.14 bits (20)</td> + <td>1.51296e-07</td> + <td>20/20 (100%)</td> + <td>0/20 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -647,13 +647,13 @@ <div class=linkheader> <div class=right><a href="#description1-2">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|2</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|2</a> <span class=b>Length:</span> 323 <span class=b>Number of Matches:</span> 1 </p> @@ -670,10 +670,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>40.1 bits(20)</td> - <td>0.0</td> - <td>20/20(100%)</td> - <td>0/20(0%)</td> + <td>40.14 bits (20)</td> + <td>1.51296e-07</td> + <td>20/20 (100%)</td> + <td>0/20 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -747,7 +747,7 @@ <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> - <div class=graphicitem style="background-color: red">200≤</div> + <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> @@ -862,7 +862,7 @@ <td>100%</td> <td>1.513e-07</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">5</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">5</a></td> </tr> <tr> <td><div><a href="#hit3-2" @@ -875,7 +875,7 @@ <td>100%</td> <td>1.513e-07</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">2</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">2</a></td> </tr> <tr> <td><div><a href="#hit3-3" @@ -888,7 +888,7 @@ <td>85%</td> <td>9.334e-06</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&log$=nuclalign">1</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&log$=nuclalign">1</a></td> </tr> </table> @@ -905,13 +905,13 @@ <div class=linkheader> <div class=right><a href="#description3-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|5</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|5</a> <span class=b>Length:</span> 2457 <span class=b>Number of Matches:</span> 1 </p> @@ -928,10 +928,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>40.1 bits(20)</td> - <td>0.0</td> - <td>20/20(100%)</td> - <td>0/20(0%)</td> + <td>40.14 bits (20)</td> + <td>1.51296e-07</td> + <td>20/20 (100%)</td> + <td>0/20 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -947,13 +947,13 @@ <div class=linkheader> <div class=right><a href="#description3-2">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|2</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|2</a> <span class=b>Length:</span> 323 <span class=b>Number of Matches:</span> 1 </p> @@ -970,10 +970,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>40.1 bits(20)</td> - <td>0.0</td> - <td>20/20(100%)</td> - <td>0/20(0%)</td> + <td>40.14 bits (20)</td> + <td>1.51296e-07</td> + <td>20/20 (100%)</td> + <td>0/20 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -989,13 +989,13 @@ <div class=linkheader> <div class=right><a href="#description3-3">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|1</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|1</a> <span class=b>Length:</span> 1045 <span class=b>Number of Matches:</span> 1 </p> @@ -1012,10 +1012,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>34.2 bits(17)</td> - <td>0.0</td> - <td>17/17(100%)</td> - <td>0/17(0%)</td> + <td>34.1929 bits (17)</td> + <td>9.33411e-06</td> + <td>17/17 (100%)</td> + <td>0/17 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -1114,7 +1114,7 @@ <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> - <div class=graphicitem style="background-color: red">200≤</div> + <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> @@ -1217,7 +1217,7 @@ <td>88%</td> <td>3.148e-06</td> <td>95%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">7</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">7</a></td> </tr> <tr> <td><div><a href="#hit6-2" @@ -1230,7 +1230,7 @@ <td>88%</td> <td>3.148e-06</td> <td>95%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">6</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">6</a></td> </tr> </table> @@ -1247,13 +1247,13 @@ <div class=linkheader> <div class=right><a href="#description6-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|7</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|7</a> <span class=b>Length:</span> 4983 <span class=b>Number of Matches:</span> 1 </p> @@ -1270,10 +1270,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>36.2 bits(18)</td> - <td>0.0</td> - <td>21/22(95%)</td> - <td>0/22(0%)</td> + <td>36.1753 bits (18)</td> + <td>3.14801e-06</td> + <td>21/22 (95%)</td> + <td>0/22 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -1289,13 +1289,13 @@ <div class=linkheader> <div class=right><a href="#description6-2">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|6</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|6</a> <span class=b>Length:</span> 4180 <span class=b>Number of Matches:</span> 1 </p> @@ -1312,10 +1312,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>36.2 bits(18)</td> - <td>0.0</td> - <td>21/22(95%)</td> - <td>0/22(0%)</td> + <td>36.1753 bits (18)</td> + <td>3.14801e-06</td> + <td>21/22 (95%)</td> + <td>0/22 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -1364,7 +1364,7 @@ <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> - <div class=graphicitem style="background-color: red">200≤</div> + <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> @@ -1467,7 +1467,7 @@ <td>100%</td> <td>3.564e-15</td> <td>86%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">7</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">7</a></td> </tr> <tr> <td><div><a href="#hit7-2" @@ -1480,7 +1480,7 @@ <td>100%</td> <td>3.564e-15</td> <td>86%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">6</a></td> + <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">6</a></td> </tr> </table> @@ -1497,13 +1497,13 @@ <div class=linkheader> <div class=right><a href="#description7-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|7</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|7</a> <span class=b>Length:</span> 4983 <span class=b>Number of Matches:</span> 1 </p> @@ -1520,10 +1520,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>67.9 bits(34)</td> - <td>0.0</td> - <td>64/74(86%)</td> - <td>0/74(0%)</td> + <td>67.8929 bits (34)</td> + <td>3.56369e-15</td> + <td>64/74 (86%)</td> + <td>0/74 (0%)</td> <td>Plus/Plus</td> </tr> </table> @@ -1542,13 +1542,13 @@ <div class=linkheader> <div class=right><a href="#description7-2">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|6</a> + <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|6</a> <span class=b>Length:</span> 4180 <span class=b>Number of Matches:</span> 1 </p> @@ -1565,10 +1565,10 @@ <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> - <td>67.9 bits(34)</td> - <td>0.0</td> - <td>64/74(86%)</td> - <td>0/74(0%)</td> + <td>67.8929 bits (34)</td> + <td>3.56369e-15</td> + <td>64/74 (86%)</td> + <td>0/74 (0%)</td> <td>Plus/Minus</td> </tr> </table>