Mercurial > repos > jankanis > blast2html

diff tool_dependencies.xml @ 64:b68c04bf6912

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work around missing ld library path for libxml
author Jan Kanis <jan.code@jankanis.nl>
date Tue, 03 Jun 2014 16:12:50 +0200
parents fb823a59918f
children c546e759bf2a
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--- a/tool_dependencies.xml	Wed May 28 16:55:11 2014 +0200
+++ b/tool_dependencies.xml	Tue Jun 03 16:12:50 2014 +0200
@@ -43,12 +43,14 @@
         </action>
         
         <action type="set_environment">
-	  <!-- Remove any incoming PYTHONPATH elements from Galaxy's own environment -->
+          <!-- Remove any incoming PYTHONPATH elements from Galaxy's own environment -->
           <environment_variable name="PYTHONPATH" action="set_to">$INSTALL_DIR/blast2html_venv/lib/python3.4/site-packages</environment_variable>
           <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/blast2html_venv/bin</environment_variable>
           <environment_variable name="PYTHONHOME" action="set_to"></environment_variable>
-	  <!-- To find shared libraries such as libssl or libxml2 -->
+          <!-- To find shared libraries such as libssl or libxml2 -->
           <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LD_LIBRARY_PATH]</environment_variable>
+          <!-- libxml2 doesn't actually export its own LD_LIBRARY_PATH -->
+          <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LIBXML_ROOT_PATH]/lib</environment_variable>
         </action>
       </actions>
     </install>