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diff example_xmls/blast xml example2.xml @ 25:b77934f57522

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add more example xmls, move them to a subdirectory
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 15 May 2014 12:24:02 +0200
parents blast xml example2.xml@bad241dc701f
children
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/example_xmls/blast xml example2.xml	Thu May 15 12:24:02 2014 +0200
@@ -0,0 +1,44 @@
+<?xml version="1.0"?>
+<!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd">
+<BlastOutput>
+  <BlastOutput_program>blastn</BlastOutput_program>
+  <BlastOutput_version>BLASTN 2.2.28+</BlastOutput_version>
+  <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&amp;auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), &quot;Gapped BLAST and PSI-BLAST: a new generation of protein database search programs&quot;, Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference>
+  <BlastOutput_db>/share/BlastDB/nt</BlastOutput_db>
+  <BlastOutput_query-ID>Query_1</BlastOutput_query-ID>
+  <BlastOutput_query-def>No definition line</BlastOutput_query-def>
+  <BlastOutput_query-len>16</BlastOutput_query-len>
+  <BlastOutput_param>
+    <Parameters>
+      <Parameters_expect>0.001</Parameters_expect>
+      <Parameters_sc-match>2</Parameters_sc-match>
+      <Parameters_sc-mismatch>-3</Parameters_sc-mismatch>
+      <Parameters_gap-open>5</Parameters_gap-open>
+      <Parameters_gap-extend>2</Parameters_gap-extend>
+      <Parameters_filter>L;m;</Parameters_filter>
+    </Parameters>
+  </BlastOutput_param>
+<BlastOutput_iterations>
+<Iteration>
+  <Iteration_iter-num>1</Iteration_iter-num>
+  <Iteration_query-ID>Query_1</Iteration_query-ID>
+  <Iteration_query-def>No definition line</Iteration_query-def>
+  <Iteration_query-len>16</Iteration_query-len>
+<Iteration_hits>
+</Iteration_hits>
+  <Iteration_stat>
+    <Statistics>
+      <Statistics_db-num>28813188</Statistics_db-num>
+      <Statistics_db-len>53027764389</Statistics_db-len>
+      <Statistics_hsp-len>13</Statistics_hsp-len>
+      <Statistics_eff-space>157959578835</Statistics_eff-space>
+      <Statistics_kappa>0.41</Statistics_kappa>
+      <Statistics_lambda>0.625</Statistics_lambda>
+      <Statistics_entropy>0.78</Statistics_entropy>
+    </Statistics>
+  </Iteration_stat>
+  <Iteration_message>No hits found</Iteration_message>
+</Iteration>
+</BlastOutput_iterations>
+</BlastOutput>
+