Mercurial > repos > jankanis > blast2html
diff tool_dependencies.xml @ 92:dede77ad7069
update to latest zlib, remove workaround for missing zlib env variable
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Tue, 24 Jun 2014 18:12:19 +0200 |
| parents | 20639b08d781 |
| children | 15b289ffdf2b |
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--- a/tool_dependencies.xml Tue Jun 24 17:59:12 2014 +0200 +++ b/tool_dependencies.xml Tue Jun 24 18:12:19 2014 +0200 @@ -12,7 +12,7 @@ <package name="zlib" version="1.2.8"> <repository name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" - toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="31f1e69aae89" /> + toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="63a4a902cda2" /> </package> <package name="blast2html_venv" version="0.2"> @@ -28,7 +28,7 @@ <package name="libxslt" version="1.1.28" /> </repository> <repository name="package_zlib_1_2_8" owner="iuc" - toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="31f1e69aae89"> + toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="63a4a902cda2"> <package name="zlib" version="1.2.8" /> </repository> </action> @@ -42,12 +42,11 @@ <!-- install lxml manually, as the setup_virtualenv action does not include the environment from set_environment_for_install but shell_command does --> <action type="shell_command"> - export LIBRARY_PATH="$ZLIB_ROOT_PATH/lib:$LIBRARY_PATH" $INSTALL_DIR/venv/bin/pip install lxml==3.3.5 </action> <action type="set_environment"> - <!-- add libxml2 library path so the runtime can find the shared library --> + <!-- add libxml2/zlib library paths so the runtime can find the shared libraries --> <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LD_LIBRARY_PATH]</environment_variable> </action> </actions>