Mercurial > repos > jankanis > blast2html
diff test-data/blast xml example3.html @ 98:e780606b7c25
test new command line parameters, fix small bug
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Mon, 30 Jun 2014 17:51:56 +0200 |
| parents | 8b3c5d334a84 |
| children | b3b5ee557170 |
line wrap: on
line diff
--- a/test-data/blast xml example3.html Mon Jun 30 17:31:26 2014 +0200 +++ b/test-data/blast xml example3.html Mon Jun 30 17:51:56 2014 +0200 @@ -794,7 +794,7 @@ <td>100%</td> <td>7.011e-08</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a></td> + <td><a href="http://example.com/example-genebank?id=Subject_3">Subject_3</a></td> </tr> </table> @@ -811,13 +811,13 @@ <div class=linkheader> <div class=right><a href="#description3-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank?id=Subject_3">Gene Bank</a> </div> <div class=title> <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_3">Subject_3</a> <span class=b>Length:</span> 323 <span class=b>Number of Matches:</span> 1 </p> @@ -1030,7 +1030,7 @@ <td>100%</td> <td>7.011e-08</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a></td> + <td><a href="http://example.com/example-genebank?id=Subject_6">Subject_6</a></td> </tr> </table> @@ -1047,13 +1047,13 @@ <div class=linkheader> <div class=right><a href="#description6-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank?id=Subject_6">Gene Bank</a> </div> <div class=title> <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_6">Subject_6</a> <span class=b>Length:</span> 2457 <span class=b>Number of Matches:</span> 1 </p> @@ -1502,7 +1502,7 @@ <td>85%</td> <td>2.981e-06</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Subject_2</a></td> + <td><a href="http://example.com/example-genebank?id=Subject_2">Subject_2</a></td> </tr> </table> @@ -1519,13 +1519,13 @@ <div class=linkheader> <div class=right><a href="#description18-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank?id=Subject_2">Gene Bank</a> </div> <div class=title> <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Subject_2</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_2">Subject_2</a> <span class=b>Length:</span> 1045 <span class=b>Number of Matches:</span> 1 </p> @@ -1686,7 +1686,7 @@ <td>100%</td> <td>7.011e-08</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a></td> + <td><a href="http://example.com/example-genebank?id=Subject_3">Subject_3</a></td> </tr> </table> @@ -1703,13 +1703,13 @@ <div class=linkheader> <div class=right><a href="#description19-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank?id=Subject_3">Gene Bank</a> </div> <div class=title> <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_3">Subject_3</a> <span class=b>Length:</span> 323 <span class=b>Number of Matches:</span> 1 </p> @@ -1922,7 +1922,7 @@ <td>100%</td> <td>7.011e-08</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a></td> + <td><a href="http://example.com/example-genebank?id=Subject_6">Subject_6</a></td> </tr> </table> @@ -1939,13 +1939,13 @@ <div class=linkheader> <div class=right><a href="#description22-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank?id=Subject_6">Gene Bank</a> </div> <div class=title> <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_6">Subject_6</a> <span class=b>Length:</span> 2457 <span class=b>Number of Matches:</span> 1 </p> @@ -2727,7 +2727,7 @@ <td>100%</td> <td>9.338e-08</td> <td>92%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a></td> + <td><a href="http://example.com/example-genebank?id=Subject_7">Subject_7</a></td> </tr> </table> @@ -2744,13 +2744,13 @@ <div class=linkheader> <div class=right><a href="#description47-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank?id=Subject_7">Gene Bank</a> </div> <div class=title> <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_7">Subject_7</a> <span class=b>Length:</span> 4180 <span class=b>Number of Matches:</span> 1 </p> @@ -2908,7 +2908,7 @@ <td>100%</td> <td>9.338e-08</td> <td>92%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a></td> + <td><a href="http://example.com/example-genebank?id=Subject_8">Subject_8</a></td> </tr> </table> @@ -2925,13 +2925,13 @@ <div class=linkheader> <div class=right><a href="#description48-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank?id=Subject_8">Gene Bank</a> </div> <div class=title> <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_8">Subject_8</a> <span class=b>Length:</span> 4983 <span class=b>Number of Matches:</span> 1 </p> @@ -3249,7 +3249,7 @@ <td>100%</td> <td>6.629e-23</td> <td>86%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a></td> + <td><a href="http://example.com/example-genebank?id=Subject_7">Subject_7</a></td> </tr> </table> @@ -3266,13 +3266,13 @@ <div class=linkheader> <div class=right><a href="#description55-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank?id=Subject_7">Gene Bank</a> </div> <div class=title> <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_7">Subject_7</a> <span class=b>Length:</span> 4180 <span class=b>Number of Matches:</span> 1 </p> @@ -3437,7 +3437,7 @@ <td>100%</td> <td>6.629e-23</td> <td>86%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a></td> + <td><a href="http://example.com/example-genebank?id=Subject_8">Subject_8</a></td> </tr> </table> @@ -3454,13 +3454,13 @@ <div class=linkheader> <div class=right><a href="#description56-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank?id=Subject_8">Gene Bank</a> </div> <div class=title> <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank?id=Subject_8">Subject_8</a> <span class=b>Length:</span> 4983 <span class=b>Number of Matches:</span> 1 </p>