Mercurial > repos > jankanis > blast2html
diff test-data/blast xml example4.html @ 98:e780606b7c25
test new command line parameters, fix small bug
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Mon, 30 Jun 2014 17:51:56 +0200 |
| parents | 8b3c5d334a84 |
| children | b3b5ee557170 |
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--- a/test-data/blast xml example4.html Mon Jun 30 17:31:26 2014 +0200 +++ b/test-data/blast xml example4.html Mon Jun 30 17:51:56 2014 +0200 @@ -557,7 +557,7 @@ <td>100%</td> <td>1.513e-07</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">5</a></td> + <td><a href="http://example.com/example-genebank/AB209952.1/">5</a></td> </tr> <tr> <td><div><a href="#hit1-2" @@ -570,7 +570,7 @@ <td>100%</td> <td>1.513e-07</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">2</a></td> + <td><a href="http://example.com/example-genebank/DJ437711/">2</a></td> </tr> </table> @@ -587,13 +587,13 @@ <div class=linkheader> <div class=right><a href="#description1-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank/AB209952.1/">Gene Bank</a> </div> <div class=title> <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|5</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a> <span class=b>Length:</span> 2457 <span class=b>Number of Matches:</span> 1 </p> @@ -629,13 +629,13 @@ <div class=linkheader> <div class=right><a href="#description1-2">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank/DJ437711/">Gene Bank</a> </div> <div class=title> <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|2</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a> <span class=b>Length:</span> 323 <span class=b>Number of Matches:</span> 1 </p> @@ -846,7 +846,7 @@ <td>100%</td> <td>1.513e-07</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">5</a></td> + <td><a href="http://example.com/example-genebank/AB209952.1/">5</a></td> </tr> <tr> <td><div><a href="#hit3-2" @@ -859,7 +859,7 @@ <td>100%</td> <td>1.513e-07</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">2</a></td> + <td><a href="http://example.com/example-genebank/DJ437711/">2</a></td> </tr> <tr> <td><div><a href="#hit3-3" @@ -872,7 +872,7 @@ <td>85%</td> <td>9.334e-06</td> <td>100%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&log$=nuclalign">1</a></td> + <td><a href="http://example.com/example-genebank/AJ308515.1/">1</a></td> </tr> </table> @@ -889,13 +889,13 @@ <div class=linkheader> <div class=right><a href="#description3-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank/AB209952.1/">Gene Bank</a> </div> <div class=title> <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/5?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|5</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AB209952.1/">gnl|BL_ORD_ID|5</a> <span class=b>Length:</span> 2457 <span class=b>Number of Matches:</span> 1 </p> @@ -931,13 +931,13 @@ <div class=linkheader> <div class=right><a href="#description3-2">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank/DJ437711/">Gene Bank</a> </div> <div class=title> <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/2?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|2</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/DJ437711/">gnl|BL_ORD_ID|2</a> <span class=b>Length:</span> 323 <span class=b>Number of Matches:</span> 1 </p> @@ -973,13 +973,13 @@ <div class=linkheader> <div class=right><a href="#description3-3">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank/AJ308515.1/">Gene Bank</a> </div> <div class=title> <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/1?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|1</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AJ308515.1/">gnl|BL_ORD_ID|1</a> <span class=b>Length:</span> 1045 <span class=b>Number of Matches:</span> 1 </p> @@ -1204,7 +1204,7 @@ <td>88%</td> <td>3.148e-06</td> <td>95%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">7</a></td> + <td><a href="http://example.com/example-genebank/EUG/">7</a></td> </tr> <tr> <td><div><a href="#hit6-2" @@ -1217,7 +1217,7 @@ <td>88%</td> <td>3.148e-06</td> <td>95%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">6</a></td> + <td><a href="http://example.com/example-genebank/AY326434/">6</a></td> </tr> </table> @@ -1234,13 +1234,13 @@ <div class=linkheader> <div class=right><a href="#description6-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank/EUG/">Gene Bank</a> </div> <div class=title> <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|7</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a> <span class=b>Length:</span> 4983 <span class=b>Number of Matches:</span> 1 </p> @@ -1276,13 +1276,13 @@ <div class=linkheader> <div class=right><a href="#description6-2">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank/AY326434/">Gene Bank</a> </div> <div class=title> <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|6</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a> <span class=b>Length:</span> 4180 <span class=b>Number of Matches:</span> 1 </p> @@ -1455,7 +1455,7 @@ <td>100%</td> <td>3.564e-15</td> <td>86%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">7</a></td> + <td><a href="http://example.com/example-genebank/EUG/">7</a></td> </tr> <tr> <td><div><a href="#hit7-2" @@ -1468,7 +1468,7 @@ <td>100%</td> <td>3.564e-15</td> <td>86%</td> - <td><a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">6</a></td> + <td><a href="http://example.com/example-genebank/AY326434/">6</a></td> </tr> </table> @@ -1485,13 +1485,13 @@ <div class=linkheader> <div class=right><a href="#description7-1">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank/EUG/">Gene Bank</a> </div> <div class=title> <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/7?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|7</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/EUG/">gnl|BL_ORD_ID|7</a> <span class=b>Length:</span> 4983 <span class=b>Number of Matches:</span> 1 </p> @@ -1530,13 +1530,13 @@ <div class=linkheader> <div class=right><a href="#description7-2">Descriptions</a></div> - <a class="linkheader" href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">Gene Bank</a> + <a class="linkheader" href="http://example.com/example-genebank/AY326434/">Gene Bank</a> </div> <div class=title> <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> <p class=titleinfo> - <span class=b>Sequence ID:</span> <a href="http://www.ncbi.nlm.nih.gov/nucleotide/6?report=genbank&log$=nuclalign">gnl|BL_ORD_ID|6</a> + <span class=b>Sequence ID:</span> <a href="http://example.com/example-genebank/AY326434/">gnl|BL_ORD_ID|6</a> <span class=b>Length:</span> 4180 <span class=b>Number of Matches:</span> 1 </p>