Mercurial > repos > jankanis > blast2html
view blast2html.xml @ 57:159989f6bfa6
depend on new python3; set LD_LIBRARY_PATH
author | Jan Kanis <jan.code@jankanis.nl> |
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date | Mon, 26 May 2014 15:34:54 +0200 |
parents | d2fb88c1e866 |
children | 39df29f647e8 |
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<tool id="blast2html" name="blast2html" version="0.0.8"> <description>Convert BLAST XML to HTML</description> <requirements> <requirement type="package" version="v0.0.18">blast_datatypes</requirement> <requirement name="package" version="3.4.1">python3</requirement> <requirement name="package" version="0.1">blast2html_venv</requirement> </requirements> <command interpreter="python3">blast2html.py -i "${input}" -o "${output}"</command> <stdio> <!-- Any exit code other than 0 is an error --> <exit_code range="1:" /> <exit_code range=":-1" /> </stdio> <inputs> <param format="blast" name="input" type="data" label="Source file"/> </inputs> <outputs> <data format="html" name="output" /> </outputs> <tests> <test> <param name="input" value="blast xml example1.xml"/> <output name="out_file1" file="blast xml example1.html"/> </test> <test> <param name="input" value="blast xml example2.xml"/> <output name="out_file1" file="blast xml example2.html"/> </test> <test> <param name="input" value="blast xml example3.xml"/> <output name="out_file1" file="blast xml example3.html"/> </test> <test> <param name="input" value="blast xml example4.xml"/> <output name="out_file1" file="blast xml example4.html"/> </test> </tests> <help> This tool converts the default BLAST XML result into a HTML document </help> </tool>