Mercurial > repos > jankanis > blast2html
view test-data/refresh_test_results.sh @ 120:2729c2326235
Fix for Rikilt issue 13
Hit e-value and identity% should be taken from the hsp with the highest
bit score. Previously each of these values was calculated independently.
Also use arrays for cover calculation instead of python lists and
refactor the hit_info() code a bit.
author | Jan Kanis <jan.code@jankanis.nl> |
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date | Thu, 31 Jul 2014 16:14:36 +0200 |
parents | b3b5ee557170 |
children |
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#!/bin/sh # run this from the directory it exists in to update the test outputs set -eu for i in 1 2 3 4 do "$@" ../blast2html.py -i "blast xml example$i.xml" -o "blast xml example$i.html" done "$@" ../blast2html.py -i "blast xml example3.xml" -o "blast xml example3b.html" --genelink-template 'http://example.com/example-genebank?id={fullid}' "$@" ../blast2html.py -i "blast xml example4.xml" -o "blast xml example4b.html" --db-config-dir .