view test-data/refresh_test_results.sh @ 120:2729c2326235

Fix for Rikilt issue 13 Hit e-value and identity% should be taken from the hsp with the highest bit score. Previously each of these values was calculated independently. Also use arrays for cover calculation instead of python lists and refactor the hit_info() code a bit.
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 31 Jul 2014 16:14:36 +0200
parents b3b5ee557170
children
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#!/bin/sh

# run this from the directory it exists in to update the test outputs

set -eu

for i in 1 2 3 4
do
    "$@" ../blast2html.py -i "blast xml example$i.xml" -o "blast xml example$i.html"
done

"$@" ../blast2html.py -i "blast xml example3.xml" -o "blast xml example3b.html" --genelink-template 'http://example.com/example-genebank?id={fullid}'
"$@" ../blast2html.py -i "blast xml example4.xml" -o "blast xml example4b.html" --db-config-dir .