Mercurial > repos > jankanis > blast2html
view blast xml example2.xml @ 19:67ddcb807b7d
make it work with multiple queries
author | Jan Kanis <jan.code@jankanis.nl> |
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date | Tue, 13 May 2014 18:06:36 +0200 |
parents | bad241dc701f |
children |
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<?xml version="1.0"?> <!DOCTYPE BlastOutput PUBLIC "-//NCBI//NCBI BlastOutput/EN" "http://www.ncbi.nlm.nih.gov/dtd/NCBI_BlastOutput.dtd"> <BlastOutput> <BlastOutput_program>blastn</BlastOutput_program> <BlastOutput_version>BLASTN 2.2.28+</BlastOutput_version> <BlastOutput_reference>Stephen F. Altschul, Thomas L. Madden, Alejandro A. Sch&auml;ffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.</BlastOutput_reference> <BlastOutput_db>/share/BlastDB/nt</BlastOutput_db> <BlastOutput_query-ID>Query_1</BlastOutput_query-ID> <BlastOutput_query-def>No definition line</BlastOutput_query-def> <BlastOutput_query-len>16</BlastOutput_query-len> <BlastOutput_param> <Parameters> <Parameters_expect>0.001</Parameters_expect> <Parameters_sc-match>2</Parameters_sc-match> <Parameters_sc-mismatch>-3</Parameters_sc-mismatch> <Parameters_gap-open>5</Parameters_gap-open> <Parameters_gap-extend>2</Parameters_gap-extend> <Parameters_filter>L;m;</Parameters_filter> </Parameters> </BlastOutput_param> <BlastOutput_iterations> <Iteration> <Iteration_iter-num>1</Iteration_iter-num> <Iteration_query-ID>Query_1</Iteration_query-ID> <Iteration_query-def>No definition line</Iteration_query-def> <Iteration_query-len>16</Iteration_query-len> <Iteration_hits> </Iteration_hits> <Iteration_stat> <Statistics> <Statistics_db-num>28813188</Statistics_db-num> <Statistics_db-len>53027764389</Statistics_db-len> <Statistics_hsp-len>13</Statistics_hsp-len> <Statistics_eff-space>157959578835</Statistics_eff-space> <Statistics_kappa>0.41</Statistics_kappa> <Statistics_lambda>0.625</Statistics_lambda> <Statistics_entropy>0.78</Statistics_entropy> </Statistics> </Iteration_stat> <Iteration_message>No hits found</Iteration_message> </Iteration> </BlastOutput_iterations> </BlastOutput>