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| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Thu, 23 Jul 2015 12:24:40 +0200 |
| parents | 7f3f8c10f44b |
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<!DOCTYPE html> <html> <head> <meta charset="UTF-8"> <meta name=generator content="blast2html; see https://github.com/thehyve/blast2html/"> <title>Blast output</title> <style> body { color: #333333; font-family: Arial,Sans-Serif; } :link { color: #336699; } .right { float: right; } /* Galaxy with html sanitization enabled strips the header of this html page. If so, show the user a warning.*/ #strip_html_warning { display: none; } #content { margin: 0 2em; padding: 0.5em; border: 1px solid #888888; background-color: #d3dff5; } h1, h2, h3, h4, h5, h6 { color: #2A6979; font-family: arial,verdana,sans-serif; letter-spacing: -1px; margin: 1.2em 0 0.3em; } h1 { font-size: 200%; } h2 { font-size: 150%; } h1, h2 { border-bottom: 1px solid #CCCCCC; padding-bottom: 0.1em; } h3 { font-size: 120%; font-weight: bold; } h5.darkHeader { color: #4D4D4D; letter-spacing: 0; font-weight: bold; font-size: 108%; } #nodata { font-weight: bold; } .index { margin-bottom: 3em; } .index div.indexentry { margin: 1.2em 1.6em; font-weight: bold; font-size: 100%; } .headerdata { font-size: 90%; } .headerdata .param { font-weight: bold; text-align: right; padding: 0 1em; } .grey { background-color: #eeeeee; border: 1px solid #cccccc; padding: 1em; } .white { background-color: white; border: 1px solid #cccccc; padding: 1.5em 2%; } .graphicrow { clear: left; width: 100%; } .graphicitem { float: left; } .graphics .grey { text-align: center; } .graphic { background-color: white; border: 2px solid black; padding: 1.5em; margin: auto; } .centered, .defline, div.legend, div.tablewrapper { margin-left: auto; margin-right: auto; } .defline { background-color: white; border: 1px solid black; margin: .5em auto; padding-left: .2em; padding-right: .2em; max-width: 50em; text-align: left; height: 2.8em; overflow: hidden; } div.legend { max-width: 40em; } div.legend div { width: 100%; color: white; font-weight: bold; border-spacing: 0; } div.legend div .graphicitem { width: 20%; padding: 0; margin: 0; border: none; } div.tablewrapper { width: 50%; min-width: 60em; } /* For small widths we give the graphic 100% */ @media (max-width: 72.5em) { div.tablewrapper { width: 100%; min-width: 0px; } } .scale { width: 100%; margin: .5em 0; font-weight: bold; } .scale div { color: red; text-align: left; } .scale .graphicrow { margin: .5em 0 .5em 0; color: white; } .scale .graphicitem { position: relative; } .scale .graphicitem div { margin: 0 1px; padding: 0 2px; text-align: right; background-color: red; color: white; } .scale .graphicitem:first-child div { margin-left: 0px; } .scale .graphicitem:last-child div { margin-right: 0px; } .scale .graphicitem .lastlabel { position: absolute; top: 0px; left: 100%; background-color: transparent; color: red; } a.matchresult { display: block; margin: 0; padding: 0; } div.matchrow { margin-top: 4px; } div.matchrow, div.matchitem { height: 4px; } table.descriptiontable { font-size: 85%; border: 1px solid #97b0c8; border-spacing: 0; color: #222222; line-height: 1.3em; background-color: white; } table.descriptiontable col:first-child { width: 100%; } table.descriptiontable tr:hover { background-color: #D5DEE3; } table.descriptiontable th { color: #14376C; font-weight: normal; background-color: #F0F0F0; background: linear-gradient(#FFFFFF, #F0F0F0); border-bottom: 1px solid #D4DFE9; border-right: 1px solid #CFCFCF; border-left: 0px solid black; border-top: 0px solid black; } table.descriptiontable td { overflow: hidden; text-align: center; padding: .4em .8em; } table.descriptiontable td div { width: 1em; overflow: visible; white-space: nowrap; text-align: left; } .alignments .white { padding: 1.5em 1em; } .alignment { border-top: 1px solid black; padding-left: 1em; padding-right: 1em; } div.linkheader { padding-top: .2em; font-size: 85%; color: #14376C; } div.linkheader a.linkheader { margin-right: 1em; } div.linkheader .right a { text-decoration: none; } .title .hittitle { color: #222222; margin-bottom: .3em; } .title .titleinfo { font-size: 80%; margin-top: 0; margin-bottom: .3em; } .title .titleinfo .b { color: #606060; font-weight: bold; font-size: 90%; } .moretitles { margin: 1.2em; } .moretitles .titleinfo { margin: 0; padding: 0; } .moretitles .hittitle { margin: .4em 0 .2em 0; padding: 0; } a.showmoretitles { font-size: 75%; color: #336699; font-weight: bold; margin-top: 0; } a.showmoretitles:hover { } .hotspot { color: #606060; font-family: verdana, arial, sans-serif; margin-bottom: 2.5em; } .hotspot p.range { font-size: 70%; margin-top: 0; margin-top: 1em; margin-bottom: .2em; } .hotspot p.range span.range { font-weight: bold; } .hotspot p.range a.range { margin-left: .5em; } table.hotspotstable { border-top: 1px solid; border-bottom: 1px solid; text-align: left; border-collapse: collapse; } table.hotspotstable th, table.hotspotstable td { padding: .1em 1em; } table.hotspotstable th { font-size: 70%; } table.hotspotstable td { min-width: 7em; color: #222222; font-size: 80%; } pre.alignmentgraphic { color: #222222; } footer { text-align: center; color: #cccccc; font-size: 70%; margin-top: 1em; } footer :link { color: #5588cc; } </style> <script type="text/javascript"> function toggle_visibility(id) { var e = document.getElementById(id); if(e.style.display != 'block') e.style.display = 'block'; else e.style.display = 'none'; } </script> </head> <body> <div id="strip_html_warning"> <!-- This div should be hidden by the header css block. Galaxy strips all css, breaking this page but making this warning visible. This warning contains some ugly old skool tabular html layout that is not stripped. --> <table bgcolor="#FFE5C9"><tr><td><font color="red"><b> <font size=5><center>This html page seems to have been stripped by Galaxy.</center></font> Disable Galaxy's html sanitization feature to view the full page (see <font face=monospace>sanitize_all_html</font> in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy. </b></font></td></tr></table> </div> <div id=content> <section class=header> <h1>Nucleotide Blast results</h1> <table class=headerdata> <tr><td class=param>Program:</td><td>BLASTN 2.2.29+</td></tr> <tr><td class=param>Database:</td><td></td></tr> </table> </section> <section class=index> <h2>Queries</h2> <div class=indexentry><a href="#match1"> Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match2"> Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match3"> Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) (20 letters, 1 hits) </a></div> <div class=indexentry><a href="#match4"> Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match5"> Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match6"> Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) (20 letters, 1 hits) </a></div> <div class=indexentry><a href="#match7"> Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match8"> Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match9"> Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match10"> Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match11"> Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match12"> Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match13"> Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match14"> Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match15"> Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match16"> Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match17"> Query_3: Probe|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match18"> Query_3: Probe|NOST-Spec_(Genetic_ID) (20 letters, 1 hits) </a></div> <div class=indexentry><a href="#match19"> Query_3: Probe|NOST-Spec_(Genetic_ID) (20 letters, 1 hits) </a></div> <div class=indexentry><a href="#match20"> Query_3: Probe|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match21"> Query_3: Probe|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match22"> Query_3: Probe|NOST-Spec_(Genetic_ID) (20 letters, 1 hits) </a></div> <div class=indexentry><a href="#match23"> Query_3: Probe|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match24"> Query_3: Probe|NOST-Spec_(Genetic_ID) (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match25"> Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R (24 letters, 0 hits) </a></div> <div class=indexentry><a href="#match26"> Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R (24 letters, 0 hits) </a></div> <div class=indexentry><a href="#match27"> Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R (24 letters, 0 hits) </a></div> <div class=indexentry><a href="#match28"> Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R (24 letters, 0 hits) </a></div> <div class=indexentry><a href="#match29"> Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R (24 letters, 0 hits) </a></div> <div class=indexentry><a href="#match30"> Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R (24 letters, 0 hits) </a></div> <div class=indexentry><a href="#match31"> Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R (24 letters, 0 hits) </a></div> <div class=indexentry><a href="#match32"> Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R (24 letters, 0 hits) </a></div> <div class=indexentry><a href="#match33"> Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match34"> Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match35"> Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match36"> Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match37"> Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match38"> Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match39"> Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match40"> Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R (20 letters, 0 hits) </a></div> <div class=indexentry><a href="#match41"> Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R (25 letters, 0 hits) </a></div> <div class=indexentry><a href="#match42"> Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R (25 letters, 0 hits) </a></div> <div class=indexentry><a href="#match43"> Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R (25 letters, 0 hits) </a></div> <div class=indexentry><a href="#match44"> Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R (25 letters, 0 hits) </a></div> <div class=indexentry><a href="#match45"> Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R (25 letters, 0 hits) </a></div> <div class=indexentry><a href="#match46"> Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R (25 letters, 0 hits) </a></div> <div class=indexentry><a href="#match47"> Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R (25 letters, 1 hits) </a></div> <div class=indexentry><a href="#match48"> Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R (25 letters, 1 hits) </a></div> <div class=indexentry><a href="#match49"> Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R (74 letters, 0 hits) </a></div> <div class=indexentry><a href="#match50"> Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R (74 letters, 0 hits) </a></div> <div class=indexentry><a href="#match51"> Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R (74 letters, 0 hits) </a></div> <div class=indexentry><a href="#match52"> Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R (74 letters, 0 hits) </a></div> <div class=indexentry><a href="#match53"> Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R (74 letters, 0 hits) </a></div> <div class=indexentry><a href="#match54"> Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R (74 letters, 0 hits) </a></div> <div class=indexentry><a href="#match55"> Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R (74 letters, 1 hits) </a></div> <div class=indexentry><a href="#match56"> Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R (74 letters, 1 hits) </a></div> </section> <section class=match id=match1> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>1</td></tr> <tr><td class=param>Query ID:</td><td>Query_1</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match2> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>2</td></tr> <tr><td class=param>Query ID:</td><td>Query_1</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match3> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>3</td></tr> <tr><td class=param>Query ID:</td><td>Query_1</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section class=graphics> <h3>Graphic Summary</h3> <div class=grey> <h4 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h4> <div class=defline id=defline3> Mouse-over to show defline and scores, click to show alignments </div> <div class=graphic> <h5 class=darkHeader>Color key for alignment scores</h5> <div class=legend><div class=graphicrow> <div class=graphicitem style="background-color: black"><40</div> <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> <div class=tablewrapper> <div class=scale> <div>query:</div> <div class=graphicrow> <div> <div class=graphicitem style="width: 10%"> <div>2</div> </div> <div class=graphicitem style="width: 10%"> <div>4</div> </div> <div class=graphicitem style="width: 10%"> <div>6</div> </div> <div class=graphicitem style="width: 10%"> <div>8</div> </div> <div class=graphicitem style="width: 10%"> <div>10</div> </div> <div class=graphicitem style="width: 10%"> <div>12</div> </div> <div class=graphicitem style="width: 10%"> <div>14</div> </div> <div class=graphicitem style="width: 10%"> <div>16</div> </div> <div class=graphicitem style="width: 10%"> <div>18</div> </div> <div class=graphicitem style="width: 10%"> <div>20</div> </div> </div> </div> <div style="clear: left"></div> </div> <a class=matchresult href="#hit3-1" onmouseover='document.getElementById("defline3").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"' onmouseout='document.getElementById("defline3").innerHTML="Mouse-over to show defline and scores, click to show alignments"' title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"> <div class="matchrow graphicrow"> <div class="matchitem graphicitem" style="background-color: black; width: 100%"></div> </div> </a> </div> </div> </div> </section> <section class=descriptions> <h3>Descriptions</h3> <div class=grey><div class=white> <h5 class=darkHeader>Sequences producing significant alignments:</h5> <table class=descriptiontable> <col/><col/><col/><col/><col/><col/><col/> <tr> <th>Description</th> <th>Max score</th> <th>Total score</th> <th>Query cover</th> <th>E value</th> <th>Ident</th> <th>Accession</th> </tr> <tr> <td><div><a href="#hit3-1" title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000" id="description3-1"> DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000 </a></div></td> <td>37.4</td> <td>37.4</td> <td>100%</td> <td>7.011e-08</td> <td>100%</td> <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a></td> </tr> </table> </div></div> </section> <section class=alignments> <h3>Alignments</h3> <div class=grey><div class=white> <div class=alignment id=hit3-1> <div class=linkheader> <div class=right><a href="#description3-1">Descriptions</a></div> <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> <p class=titleinfo> <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a> <span class=b>Length:</span> 323 <span class=b>Number of Matches:</span> 1 </p> </div> <div class=hotspot id=hotspot3-1-1> <p class=range> <span class=range>Range 1: 200 to 219</span> </p> <table class=hotspotstable> <tr> <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> <td>37.3537 bits (40)</td> <td>7.01052e-08</td> <td>20/20 (100%)</td> <td>0/20 (0%)</td> <td>Plus/Plus</td> </tr> </table> <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20 |||||||||||||||||||| Subject 200 AGCGCGCAAACTAGGATAAA 219</pre> </div> </div> </div></div> </section> </section> <section class=match id=match4> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>4</td></tr> <tr><td class=param>Query ID:</td><td>Query_1</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match5> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>5</td></tr> <tr><td class=param>Query ID:</td><td>Query_1</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match6> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>6</td></tr> <tr><td class=param>Query ID:</td><td>Query_1</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section class=graphics> <h3>Graphic Summary</h3> <div class=grey> <h4 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h4> <div class=defline id=defline6> Mouse-over to show defline and scores, click to show alignments </div> <div class=graphic> <h5 class=darkHeader>Color key for alignment scores</h5> <div class=legend><div class=graphicrow> <div class=graphicitem style="background-color: black"><40</div> <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> <div class=tablewrapper> <div class=scale> <div>query:</div> <div class=graphicrow> <div> <div class=graphicitem style="width: 10%"> <div>2</div> </div> <div class=graphicitem style="width: 10%"> <div>4</div> </div> <div class=graphicitem style="width: 10%"> <div>6</div> </div> <div class=graphicitem style="width: 10%"> <div>8</div> </div> <div class=graphicitem style="width: 10%"> <div>10</div> </div> <div class=graphicitem style="width: 10%"> <div>12</div> </div> <div class=graphicitem style="width: 10%"> <div>14</div> </div> <div class=graphicitem style="width: 10%"> <div>16</div> </div> <div class=graphicitem style="width: 10%"> <div>18</div> </div> <div class=graphicitem style="width: 10%"> <div>20</div> </div> </div> </div> <div style="clear: left"></div> </div> <a class=matchresult href="#hit6-1" onmouseover='document.getElementById("defline6").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"' onmouseout='document.getElementById("defline6").innerHTML="Mouse-over to show defline and scores, click to show alignments"' title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"> <div class="matchrow graphicrow"> <div class="matchitem graphicitem" style="background-color: black; width: 100%"></div> </div> </a> </div> </div> </div> </section> <section class=descriptions> <h3>Descriptions</h3> <div class=grey><div class=white> <h5 class=darkHeader>Sequences producing significant alignments:</h5> <table class=descriptiontable> <col/><col/><col/><col/><col/><col/><col/> <tr> <th>Description</th> <th>Max score</th> <th>Total score</th> <th>Query cover</th> <th>E value</th> <th>Ident</th> <th>Accession</th> </tr> <tr> <td><div><a href="#hit6-1" title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000" id="description6-1"> AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000 </a></div></td> <td>37.4</td> <td>37.4</td> <td>100%</td> <td>7.011e-08</td> <td>100%</td> <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a></td> </tr> </table> </div></div> </section> <section class=alignments> <h3>Alignments</h3> <div class=grey><div class=white> <div class=alignment id=hit6-1> <div class=linkheader> <div class=right><a href="#description6-1">Descriptions</a></div> <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> <p class=titleinfo> <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a> <span class=b>Length:</span> 2457 <span class=b>Number of Matches:</span> 1 </p> </div> <div class=hotspot id=hotspot6-1-1> <p class=range> <span class=range>Range 1: 2119 to 2138</span> </p> <table class=hotspotstable> <tr> <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> <td>37.3537 bits (40)</td> <td>7.01052e-08</td> <td>20/20 (100%)</td> <td>0/20 (0%)</td> <td>Plus/Plus</td> </tr> </table> <pre class=alignmentgraphic>Query 1 AGCGCGCAAACTAGGATAAA 20 |||||||||||||||||||| Subject 2119 AGCGCGCAAACTAGGATAAA 2138</pre> </div> </div> </div></div> </section> </section> <section class=match id=match7> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>7</td></tr> <tr><td class=param>Query ID:</td><td>Query_1</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match8> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>8</td></tr> <tr><td class=param>Query ID:</td><td>Query_1</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match9> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>9</td></tr> <tr><td class=param>Query ID:</td><td>Query_2</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match10> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>10</td></tr> <tr><td class=param>Query ID:</td><td>Query_2</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match11> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>11</td></tr> <tr><td class=param>Query ID:</td><td>Query_2</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match12> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>12</td></tr> <tr><td class=param>Query ID:</td><td>Query_2</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match13> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>13</td></tr> <tr><td class=param>Query ID:</td><td>Query_2</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match14> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>14</td></tr> <tr><td class=param>Query ID:</td><td>Query_2</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match15> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>15</td></tr> <tr><td class=param>Query ID:</td><td>Query_2</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match16> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>16</td></tr> <tr><td class=param>Query ID:</td><td>Query_2</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match17> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>17</td></tr> <tr><td class=param>Query ID:</td><td>Query_3</td></tr> <tr><td class=param>Definition line:</td><td>Probe|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match18> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>18</td></tr> <tr><td class=param>Query ID:</td><td>Query_3</td></tr> <tr><td class=param>Definition line:</td><td>Probe|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section class=graphics> <h3>Graphic Summary</h3> <div class=grey> <h4 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h4> <div class=defline id=defline18> Mouse-over to show defline and scores, click to show alignments </div> <div class=graphic> <h5 class=darkHeader>Color key for alignment scores</h5> <div class=legend><div class=graphicrow> <div class=graphicitem style="background-color: black"><40</div> <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> <div class=tablewrapper> <div class=scale> <div>query:</div> <div class=graphicrow> <div> <div class=graphicitem style="width: 10%"> <div>2</div> </div> <div class=graphicitem style="width: 10%"> <div>4</div> </div> <div class=graphicitem style="width: 10%"> <div>6</div> </div> <div class=graphicitem style="width: 10%"> <div>8</div> </div> <div class=graphicitem style="width: 10%"> <div>10</div> </div> <div class=graphicitem style="width: 10%"> <div>12</div> </div> <div class=graphicitem style="width: 10%"> <div>14</div> </div> <div class=graphicitem style="width: 10%"> <div>16</div> </div> <div class=graphicitem style="width: 10%"> <div>18</div> </div> <div class=graphicitem style="width: 10%"> <div>20</div> </div> </div> </div> <div style="clear: left"></div> </div> <a class=matchresult href="#hit18-1" onmouseover='document.getElementById("defline18").innerHTML="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3\u0027UTR/plant_junction_region.|-9105899556052450000"' onmouseout='document.getElementById("defline18").innerHTML="Mouse-over to show defline and scores, click to show alignments"' title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000"> <div class="matchrow graphicrow"> <div class="matchitem graphicitem" style="background-color: transparent; width: 15%"></div> <div class="matchitem graphicitem" style="background-color: black; width: 85%"></div> </div> </a> </div> </div> </div> </section> <section class=descriptions> <h3>Descriptions</h3> <div class=grey><div class=white> <h5 class=darkHeader>Sequences producing significant alignments:</h5> <table class=descriptiontable> <col/><col/><col/><col/><col/><col/><col/> <tr> <th>Description</th> <th>Max score</th> <th>Total score</th> <th>Query cover</th> <th>E value</th> <th>Ident</th> <th>Accession</th> </tr> <tr> <td><div><a href="#hit18-1" title="AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000" id="description18-1"> AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000 </a></div></td> <td>31.9</td> <td>31.9</td> <td>85%</td> <td>2.981e-06</td> <td>100%</td> <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Subject_2</a></td> </tr> </table> </div></div> </section> <section class=alignments> <h3>Alignments</h3> <div class=grey><div class=white> <div class=alignment id=hit18-1> <div class=linkheader> <div class=right><a href="#description18-1">Descriptions</a></div> <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000</p> <p class=titleinfo> <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_2?report=genbank&log$=nuclalign">Subject_2</a> <span class=b>Length:</span> 1045 <span class=b>Number of Matches:</span> 1 </p> </div> <div class=hotspot id=hotspot18-1-1> <p class=range> <span class=range>Range 1: 2 to 18</span> </p> <table class=hotspotstable> <tr> <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> <td>31.9436 bits (34)</td> <td>2.98095e-06</td> <td>17/17 (100%)</td> <td>0/17 (0%)</td> <td>Plus/Plus</td> </tr> </table> <pre class=alignmentgraphic>Query 4 GCGCGGTGTCATCTATG 20 ||||||||||||||||| Subject 2 GCGCGGTGTCATCTATG 18</pre> </div> </div> </div></div> </section> </section> <section class=match id=match19> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>19</td></tr> <tr><td class=param>Query ID:</td><td>Query_3</td></tr> <tr><td class=param>Definition line:</td><td>Probe|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section class=graphics> <h3>Graphic Summary</h3> <div class=grey> <h4 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h4> <div class=defline id=defline19> Mouse-over to show defline and scores, click to show alignments </div> <div class=graphic> <h5 class=darkHeader>Color key for alignment scores</h5> <div class=legend><div class=graphicrow> <div class=graphicitem style="background-color: black"><40</div> <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> <div class=tablewrapper> <div class=scale> <div>query:</div> <div class=graphicrow> <div> <div class=graphicitem style="width: 10%"> <div>2</div> </div> <div class=graphicitem style="width: 10%"> <div>4</div> </div> <div class=graphicitem style="width: 10%"> <div>6</div> </div> <div class=graphicitem style="width: 10%"> <div>8</div> </div> <div class=graphicitem style="width: 10%"> <div>10</div> </div> <div class=graphicitem style="width: 10%"> <div>12</div> </div> <div class=graphicitem style="width: 10%"> <div>14</div> </div> <div class=graphicitem style="width: 10%"> <div>16</div> </div> <div class=graphicitem style="width: 10%"> <div>18</div> </div> <div class=graphicitem style="width: 10%"> <div>20</div> </div> </div> </div> <div style="clear: left"></div> </div> <a class=matchresult href="#hit19-1" onmouseover='document.getElementById("defline19").innerHTML="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"' onmouseout='document.getElementById("defline19").innerHTML="Mouse-over to show defline and scores, click to show alignments"' title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000"> <div class="matchrow graphicrow"> <div class="matchitem graphicitem" style="background-color: black; width: 100%"></div> </div> </a> </div> </div> </div> </section> <section class=descriptions> <h3>Descriptions</h3> <div class=grey><div class=white> <h5 class=darkHeader>Sequences producing significant alignments:</h5> <table class=descriptiontable> <col/><col/><col/><col/><col/><col/><col/> <tr> <th>Description</th> <th>Max score</th> <th>Total score</th> <th>Query cover</th> <th>E value</th> <th>Ident</th> <th>Accession</th> </tr> <tr> <td><div><a href="#hit19-1" title="DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000" id="description19-1"> DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000 </a></div></td> <td>37.4</td> <td>37.4</td> <td>100%</td> <td>7.011e-08</td> <td>100%</td> <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a></td> </tr> </table> </div></div> </section> <section class=alignments> <h3>Alignments</h3> <div class=grey><div class=white> <div class=alignment id=hit19-1> <div class=linkheader> <div class=right><a href="#description19-1">Descriptions</a></div> <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000</p> <p class=titleinfo> <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_3?report=genbank&log$=nuclalign">Subject_3</a> <span class=b>Length:</span> 323 <span class=b>Number of Matches:</span> 1 </p> </div> <div class=hotspot id=hotspot19-1-1> <p class=range> <span class=range>Range 1: 224 to 243</span> </p> <table class=hotspotstable> <tr> <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> <td>37.3537 bits (40)</td> <td>7.01052e-08</td> <td>20/20 (100%)</td> <td>0/20 (0%)</td> <td>Plus/Plus</td> </tr> </table> <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20 |||||||||||||||||||| Subject 224 CGCGCGCGGTGTCATCTATG 243</pre> </div> </div> </div></div> </section> </section> <section class=match id=match20> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>20</td></tr> <tr><td class=param>Query ID:</td><td>Query_3</td></tr> <tr><td class=param>Definition line:</td><td>Probe|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match21> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>21</td></tr> <tr><td class=param>Query ID:</td><td>Query_3</td></tr> <tr><td class=param>Definition line:</td><td>Probe|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match22> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>22</td></tr> <tr><td class=param>Query ID:</td><td>Query_3</td></tr> <tr><td class=param>Definition line:</td><td>Probe|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section class=graphics> <h3>Graphic Summary</h3> <div class=grey> <h4 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h4> <div class=defline id=defline22> Mouse-over to show defline and scores, click to show alignments </div> <div class=graphic> <h5 class=darkHeader>Color key for alignment scores</h5> <div class=legend><div class=graphicrow> <div class=graphicitem style="background-color: black"><40</div> <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> <div class=tablewrapper> <div class=scale> <div>query:</div> <div class=graphicrow> <div> <div class=graphicitem style="width: 10%"> <div>2</div> </div> <div class=graphicitem style="width: 10%"> <div>4</div> </div> <div class=graphicitem style="width: 10%"> <div>6</div> </div> <div class=graphicitem style="width: 10%"> <div>8</div> </div> <div class=graphicitem style="width: 10%"> <div>10</div> </div> <div class=graphicitem style="width: 10%"> <div>12</div> </div> <div class=graphicitem style="width: 10%"> <div>14</div> </div> <div class=graphicitem style="width: 10%"> <div>16</div> </div> <div class=graphicitem style="width: 10%"> <div>18</div> </div> <div class=graphicitem style="width: 10%"> <div>20</div> </div> </div> </div> <div style="clear: left"></div> </div> <a class=matchresult href="#hit22-1" onmouseover='document.getElementById("defline22").innerHTML="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"' onmouseout='document.getElementById("defline22").innerHTML="Mouse-over to show defline and scores, click to show alignments"' title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000"> <div class="matchrow graphicrow"> <div class="matchitem graphicitem" style="background-color: black; width: 100%"></div> </div> </a> </div> </div> </div> </section> <section class=descriptions> <h3>Descriptions</h3> <div class=grey><div class=white> <h5 class=darkHeader>Sequences producing significant alignments:</h5> <table class=descriptiontable> <col/><col/><col/><col/><col/><col/><col/> <tr> <th>Description</th> <th>Max score</th> <th>Total score</th> <th>Query cover</th> <th>E value</th> <th>Ident</th> <th>Accession</th> </tr> <tr> <td><div><a href="#hit22-1" title="AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000" id="description22-1"> AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000 </a></div></td> <td>37.4</td> <td>37.4</td> <td>100%</td> <td>7.011e-08</td> <td>100%</td> <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a></td> </tr> </table> </div></div> </section> <section class=alignments> <h3>Alignments</h3> <div class=grey><div class=white> <div class=alignment id=hit22-1> <div class=linkheader> <div class=right><a href="#description22-1">Descriptions</a></div> <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000</p> <p class=titleinfo> <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_6?report=genbank&log$=nuclalign">Subject_6</a> <span class=b>Length:</span> 2457 <span class=b>Number of Matches:</span> 1 </p> </div> <div class=hotspot id=hotspot22-1-1> <p class=range> <span class=range>Range 1: 2143 to 2162</span> </p> <table class=hotspotstable> <tr> <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> <td>37.3537 bits (40)</td> <td>7.01052e-08</td> <td>20/20 (100%)</td> <td>0/20 (0%)</td> <td>Plus/Plus</td> </tr> </table> <pre class=alignmentgraphic>Query 1 CGCGCGCGGTGTCATCTATG 20 |||||||||||||||||||| Subject 2143 CGCGCGCGGTGTCATCTATG 2162</pre> </div> </div> </div></div> </section> </section> <section class=match id=match23> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>23</td></tr> <tr><td class=param>Query ID:</td><td>Query_3</td></tr> <tr><td class=param>Definition line:</td><td>Probe|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match24> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>24</td></tr> <tr><td class=param>Query ID:</td><td>Query_3</td></tr> <tr><td class=param>Definition line:</td><td>Probe|NOST-Spec_(Genetic_ID)</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match25> <h2>Nucleotide Sequence (24 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>25</td></tr> <tr><td class=param>Query ID:</td><td>Query_4</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>24</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match26> <h2>Nucleotide Sequence (24 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>26</td></tr> <tr><td class=param>Query ID:</td><td>Query_4</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>24</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match27> <h2>Nucleotide Sequence (24 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>27</td></tr> <tr><td class=param>Query ID:</td><td>Query_4</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>24</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match28> <h2>Nucleotide Sequence (24 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>28</td></tr> <tr><td class=param>Query ID:</td><td>Query_4</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>24</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match29> <h2>Nucleotide Sequence (24 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>29</td></tr> <tr><td class=param>Query ID:</td><td>Query_4</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>24</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match30> <h2>Nucleotide Sequence (24 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>30</td></tr> <tr><td class=param>Query ID:</td><td>Query_4</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>24</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match31> <h2>Nucleotide Sequence (24 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>31</td></tr> <tr><td class=param>Query ID:</td><td>Query_4</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>24</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match32> <h2>Nucleotide Sequence (24 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>32</td></tr> <tr><td class=param>Query ID:</td><td>Query_4</td></tr> <tr><td class=param>Definition line:</td><td>Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>24</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match33> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>33</td></tr> <tr><td class=param>Query ID:</td><td>Query_5</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match34> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>34</td></tr> <tr><td class=param>Query ID:</td><td>Query_5</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match35> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>35</td></tr> <tr><td class=param>Query ID:</td><td>Query_5</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match36> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>36</td></tr> <tr><td class=param>Query ID:</td><td>Query_5</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match37> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>37</td></tr> <tr><td class=param>Query ID:</td><td>Query_5</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match38> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>38</td></tr> <tr><td class=param>Query ID:</td><td>Query_5</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match39> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>39</td></tr> <tr><td class=param>Query ID:</td><td>Query_5</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match40> <h2>Nucleotide Sequence (20 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>40</td></tr> <tr><td class=param>Query ID:</td><td>Query_5</td></tr> <tr><td class=param>Definition line:</td><td>Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>20</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match41> <h2>Nucleotide Sequence (25 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>41</td></tr> <tr><td class=param>Query ID:</td><td>Query_6</td></tr> <tr><td class=param>Definition line:</td><td>Probe|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>25</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match42> <h2>Nucleotide Sequence (25 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>42</td></tr> <tr><td class=param>Query ID:</td><td>Query_6</td></tr> <tr><td class=param>Definition line:</td><td>Probe|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>25</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match43> <h2>Nucleotide Sequence (25 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>43</td></tr> <tr><td class=param>Query ID:</td><td>Query_6</td></tr> <tr><td class=param>Definition line:</td><td>Probe|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>25</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match44> <h2>Nucleotide Sequence (25 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>44</td></tr> <tr><td class=param>Query ID:</td><td>Query_6</td></tr> <tr><td class=param>Definition line:</td><td>Probe|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>25</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match45> <h2>Nucleotide Sequence (25 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>45</td></tr> <tr><td class=param>Query ID:</td><td>Query_6</td></tr> <tr><td class=param>Definition line:</td><td>Probe|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>25</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match46> <h2>Nucleotide Sequence (25 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>46</td></tr> <tr><td class=param>Query ID:</td><td>Query_6</td></tr> <tr><td class=param>Definition line:</td><td>Probe|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>25</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match47> <h2>Nucleotide Sequence (25 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>47</td></tr> <tr><td class=param>Query ID:</td><td>Query_6</td></tr> <tr><td class=param>Definition line:</td><td>Probe|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>25</td></tr> </table> </section> <section class=graphics> <h3>Graphic Summary</h3> <div class=grey> <h4 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h4> <div class=defline id=defline47> Mouse-over to show defline and scores, click to show alignments </div> <div class=graphic> <h5 class=darkHeader>Color key for alignment scores</h5> <div class=legend><div class=graphicrow> <div class=graphicitem style="background-color: black"><40</div> <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> <div class=tablewrapper> <div class=scale> <div>query:</div> <div class=graphicrow> <div> <div class=graphicitem style="width: 12%"> <div>3</div> </div> <div class=graphicitem style="width: 12%"> <div>6</div> </div> <div class=graphicitem style="width: 12%"> <div>9</div> </div> <div class=graphicitem style="width: 12%"> <div>12</div> </div> <div class=graphicitem style="width: 12%"> <div>15</div> </div> <div class=graphicitem style="width: 12%"> <div>18</div> </div> <div class=graphicitem style="width: 12%"> <div>21</div> </div> <div class=graphicitem style="width: 12%"> <div>24</div> </div> <div class=graphicitem style="width: 4%"> <div>25</div> </div> </div> </div> <div style="clear: left"></div> </div> <a class=matchresult href="#hit47-1" onmouseover='document.getElementById("defline47").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"' onmouseout='document.getElementById("defline47").innerHTML="Mouse-over to show defline and scores, click to show alignments"' title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"> <div class="matchrow graphicrow"> <div class="matchitem graphicitem" style="background-color: black; width: 100%"></div> </div> </a> </div> </div> </div> </section> <section class=descriptions> <h3>Descriptions</h3> <div class=grey><div class=white> <h5 class=darkHeader>Sequences producing significant alignments:</h5> <table class=descriptiontable> <col/><col/><col/><col/><col/><col/><col/> <tr> <th>Description</th> <th>Max score</th> <th>Total score</th> <th>Query cover</th> <th>E value</th> <th>Ident</th> <th>Accession</th> </tr> <tr> <td><div><a href="#hit47-1" title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000" id="description47-1"> AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000 </a></div></td> <td>37.4</td> <td>37.4</td> <td>100%</td> <td>9.338e-08</td> <td>92%</td> <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a></td> </tr> </table> </div></div> </section> <section class=alignments> <h3>Alignments</h3> <div class=grey><div class=white> <div class=alignment id=hit47-1> <div class=linkheader> <div class=right><a href="#description47-1">Descriptions</a></div> <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> <p class=titleinfo> <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a> <span class=b>Length:</span> 4180 <span class=b>Number of Matches:</span> 1 </p> </div> <div class=hotspot id=hotspot47-1-1> <p class=range> <span class=range>Range 1: 1541 to 1565</span> </p> <table class=hotspotstable> <tr> <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> <td>37.3537 bits (40)</td> <td>9.33825e-08</td> <td>23/25 (92%)</td> <td>0/25 (0%)</td> <td>Plus/Plus</td> </tr> </table> <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCACAGC 25 |||||||||||||| ||||||| || Subject 1541 ACATGAACAGCGCCCTGACCACCGC 1565</pre> </div> </div> </div></div> </section> </section> <section class=match id=match48> <h2>Nucleotide Sequence (25 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>48</td></tr> <tr><td class=param>Query ID:</td><td>Query_6</td></tr> <tr><td class=param>Definition line:</td><td>Probe|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>25</td></tr> </table> </section> <section class=graphics> <h3>Graphic Summary</h3> <div class=grey> <h4 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h4> <div class=defline id=defline48> Mouse-over to show defline and scores, click to show alignments </div> <div class=graphic> <h5 class=darkHeader>Color key for alignment scores</h5> <div class=legend><div class=graphicrow> <div class=graphicitem style="background-color: black"><40</div> <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> <div class=tablewrapper> <div class=scale> <div>query:</div> <div class=graphicrow> <div> <div class=graphicitem style="width: 12%"> <div>3</div> </div> <div class=graphicitem style="width: 12%"> <div>6</div> </div> <div class=graphicitem style="width: 12%"> <div>9</div> </div> <div class=graphicitem style="width: 12%"> <div>12</div> </div> <div class=graphicitem style="width: 12%"> <div>15</div> </div> <div class=graphicitem style="width: 12%"> <div>18</div> </div> <div class=graphicitem style="width: 12%"> <div>21</div> </div> <div class=graphicitem style="width: 12%"> <div>24</div> </div> <div class=graphicitem style="width: 4%"> <div>25</div> </div> </div> </div> <div style="clear: left"></div> </div> <a class=matchresult href="#hit48-1" onmouseover='document.getElementById("defline48").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"' onmouseout='document.getElementById("defline48").innerHTML="Mouse-over to show defline and scores, click to show alignments"' title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"> <div class="matchrow graphicrow"> <div class="matchitem graphicitem" style="background-color: black; width: 100%"></div> </div> </a> </div> </div> </div> </section> <section class=descriptions> <h3>Descriptions</h3> <div class=grey><div class=white> <h5 class=darkHeader>Sequences producing significant alignments:</h5> <table class=descriptiontable> <col/><col/><col/><col/><col/><col/><col/> <tr> <th>Description</th> <th>Max score</th> <th>Total score</th> <th>Query cover</th> <th>E value</th> <th>Ident</th> <th>Accession</th> </tr> <tr> <td><div><a href="#hit48-1" title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000" id="description48-1"> EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000 </a></div></td> <td>37.4</td> <td>37.4</td> <td>100%</td> <td>9.338e-08</td> <td>92%</td> <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a></td> </tr> </table> </div></div> </section> <section class=alignments> <h3>Alignments</h3> <div class=grey><div class=white> <div class=alignment id=hit48-1> <div class=linkheader> <div class=right><a href="#description48-1">Descriptions</a></div> <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> <p class=titleinfo> <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a> <span class=b>Length:</span> 4983 <span class=b>Number of Matches:</span> 1 </p> </div> <div class=hotspot id=hotspot48-1-1> <p class=range> <span class=range>Range 1: 2344 to 2368</span> </p> <table class=hotspotstable> <tr> <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> <td>37.3537 bits (40)</td> <td>9.33825e-08</td> <td>23/25 (92%)</td> <td>0/25 (0%)</td> <td>Plus/Plus</td> </tr> </table> <pre class=alignmentgraphic>Query 1 ACATGAACAGCGCCTTGACCACAGC 25 |||||||||||||| ||||||| || Subject 2344 ACATGAACAGCGCCCTGACCACCGC 2368</pre> </div> </div> </div></div> </section> </section> <section class=match id=match49> <h2>Nucleotide Sequence (74 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>49</td></tr> <tr><td class=param>Query ID:</td><td>Query_7</td></tr> <tr><td class=param>Definition line:</td><td>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>74</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match50> <h2>Nucleotide Sequence (74 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>50</td></tr> <tr><td class=param>Query ID:</td><td>Query_7</td></tr> <tr><td class=param>Definition line:</td><td>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>74</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match51> <h2>Nucleotide Sequence (74 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>51</td></tr> <tr><td class=param>Query ID:</td><td>Query_7</td></tr> <tr><td class=param>Definition line:</td><td>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>74</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match52> <h2>Nucleotide Sequence (74 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>52</td></tr> <tr><td class=param>Query ID:</td><td>Query_7</td></tr> <tr><td class=param>Definition line:</td><td>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>74</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match53> <h2>Nucleotide Sequence (74 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>53</td></tr> <tr><td class=param>Query ID:</td><td>Query_7</td></tr> <tr><td class=param>Definition line:</td><td>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>74</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match54> <h2>Nucleotide Sequence (74 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>54</td></tr> <tr><td class=param>Query ID:</td><td>Query_7</td></tr> <tr><td class=param>Definition line:</td><td>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>74</td></tr> </table> </section> <section> <h3>No Hits</h3> <div class=grey> <table class=headerdata> <tr><td class=param>Message:</td><td>No hits found</td></tr> </table> </div> </section> </section> <section class=match id=match55> <h2>Nucleotide Sequence (74 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>55</td></tr> <tr><td class=param>Query ID:</td><td>Query_7</td></tr> <tr><td class=param>Definition line:</td><td>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>74</td></tr> </table> </section> <section class=graphics> <h3>Graphic Summary</h3> <div class=grey> <h4 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h4> <div class=defline id=defline55> Mouse-over to show defline and scores, click to show alignments </div> <div class=graphic> <h5 class=darkHeader>Color key for alignment scores</h5> <div class=legend><div class=graphicrow> <div class=graphicitem style="background-color: black"><40</div> <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> <div class=tablewrapper> <div class=scale> <div>query:</div> <div class=graphicrow> <div> <div class=graphicitem style="width: 10.8108108108%"> <div>8</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>16</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>24</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>32</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>40</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>48</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>56</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>64</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>72</div> </div> <div class=graphicitem style="width: 2.7027027027%"> <div> </div> <div class=lastlabel>74</div> </div> </div> </div> <div style="clear: left"></div> </div> <a class=matchresult href="#hit55-1" onmouseover='document.getElementById("defline55").innerHTML="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"' onmouseout='document.getElementById("defline55").innerHTML="Mouse-over to show defline and scores, click to show alignments"' title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000"> <div class="matchrow graphicrow"> <div class="matchitem graphicitem" style="background-color: green; width: 100%"></div> </div> </a> </div> </div> </div> </section> <section class=descriptions> <h3>Descriptions</h3> <div class=grey><div class=white> <h5 class=darkHeader>Sequences producing significant alignments:</h5> <table class=descriptiontable> <col/><col/><col/><col/><col/><col/><col/> <tr> <th>Description</th> <th>Max score</th> <th>Total score</th> <th>Query cover</th> <th>E value</th> <th>Ident</th> <th>Accession</th> </tr> <tr> <td><div><a href="#hit55-1" title="AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000" id="description55-1"> AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000 </a></div></td> <td>89.7</td> <td>89.7</td> <td>100%</td> <td>6.629e-23</td> <td>86%</td> <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a></td> </tr> </table> </div></div> </section> <section class=alignments> <h3>Alignments</h3> <div class=grey><div class=white> <div class=alignment id=hit55-1> <div class=linkheader> <div class=right><a href="#description55-1">Descriptions</a></div> <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000</p> <p class=titleinfo> <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_7?report=genbank&log$=nuclalign">Subject_7</a> <span class=b>Length:</span> 4180 <span class=b>Number of Matches:</span> 1 </p> </div> <div class=hotspot id=hotspot55-1-1> <p class=range> <span class=range>Range 1: 1516 to 1589</span> </p> <table class=hotspotstable> <tr> <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> <td>89.6514 bits (98)</td> <td>6.62923e-23</td> <td>64/74 (86%)</td> <td>0/74 (0%)</td> <td>Plus/Plus</td> </tr> </table> <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG 60 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | Subject 1516 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC 1575</pre> <pre class=alignmentgraphic>Query 61 TTCGCAGTCCAGAA 74 ||||| |||||||| Subject 1576 TTCGCCGTCCAGAA 1589</pre> </div> </div> </div></div> </section> </section> <section class=match id=match56> <h2>Nucleotide Sequence (74 letters)</h2> <section class=header> <table class=headerdata> <tr><td class=param>Query number:</td><td>56</td></tr> <tr><td class=param>Query ID:</td><td>Query_7</td></tr> <tr><td class=param>Definition line:</td><td>Amplicon|QL-ELE-Bt-F1(mod)/Bt-R</td></tr> <tr><td class=param>Length:</td><td>74</td></tr> </table> </section> <section class=graphics> <h3>Graphic Summary</h3> <div class=grey> <h4 class=centered>Distribution of 56 Blast Hits on the Query Sequence</h4> <div class=defline id=defline56> Mouse-over to show defline and scores, click to show alignments </div> <div class=graphic> <h5 class=darkHeader>Color key for alignment scores</h5> <div class=legend><div class=graphicrow> <div class=graphicitem style="background-color: black"><40</div> <div class=graphicitem style="background-color: blue">40–50</div> <div class=graphicitem style="background-color: green">50–80</div> <div class=graphicitem style="background-color: magenta">80–200</div> <div class=graphicitem style="background-color: red">≥200</div> </div></div> <div style="clear: left"></div> <div class=tablewrapper> <div class=scale> <div>query:</div> <div class=graphicrow> <div> <div class=graphicitem style="width: 10.8108108108%"> <div>8</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>16</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>24</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>32</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>40</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>48</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>56</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>64</div> </div> <div class=graphicitem style="width: 10.8108108108%"> <div>72</div> </div> <div class=graphicitem style="width: 2.7027027027%"> <div> </div> <div class=lastlabel>74</div> </div> </div> </div> <div style="clear: left"></div> </div> <a class=matchresult href="#hit56-1" onmouseover='document.getElementById("defline56").innerHTML="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"' onmouseout='document.getElementById("defline56").innerHTML="Mouse-over to show defline and scores, click to show alignments"' title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000"> <div class="matchrow graphicrow"> <div class="matchitem graphicitem" style="background-color: green; width: 100%"></div> </div> </a> </div> </div> </div> </section> <section class=descriptions> <h3>Descriptions</h3> <div class=grey><div class=white> <h5 class=darkHeader>Sequences producing significant alignments:</h5> <table class=descriptiontable> <col/><col/><col/><col/><col/><col/><col/> <tr> <th>Description</th> <th>Max score</th> <th>Total score</th> <th>Query cover</th> <th>E value</th> <th>Ident</th> <th>Accession</th> </tr> <tr> <td><div><a href="#hit56-1" title="EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000" id="description56-1"> EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000 </a></div></td> <td>89.7</td> <td>89.7</td> <td>100%</td> <td>6.629e-23</td> <td>86%</td> <td><a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a></td> </tr> </table> </div></div> </section> <section class=alignments> <h3>Alignments</h3> <div class=grey><div class=white> <div class=alignment id=hit56-1> <div class=linkheader> <div class=right><a href="#description56-1">Descriptions</a></div> <a class="linkheader" target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Gene Bank</a> </div> <div class=title> <p class=hittitle>EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000</p> <p class=titleinfo> <span class=b>Sequence ID:</span> <a target="_top" href="http://www.ncbi.nlm.nih.gov/nucleotide/Subject_8?report=genbank&log$=nuclalign">Subject_8</a> <span class=b>Length:</span> 4983 <span class=b>Number of Matches:</span> 1 </p> </div> <div class=hotspot id=hotspot56-1-1> <p class=range> <span class=range>Range 1: 2319 to 2392</span> </p> <table class=hotspotstable> <tr> <th>Score</th><th>Expect</th><th>Identities</th><th>Gaps</th><th>Strand</th> </tr> <tr> <td>89.6514 bits (98)</td> <td>6.62923e-23</td> <td>64/74 (86%)</td> <td>0/74 (0%)</td> <td>Plus/Plus</td> </tr> </table> <pre class=alignmentgraphic>Query 1 GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG 60 ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | Subject 2319 GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC 2378</pre> <pre class=alignmentgraphic>Query 61 TTCGCAGTCCAGAA 74 ||||| |||||||| Subject 2379 TTCGCCGTCCAGAA 2392</pre> </div> </div> </div></div> </section> </section> </div> <footer> This page was generated by <a href="https://github.com/thehyve/blast2html/">blast2html</a>. </footer> </body> </html>