# HG changeset patch # User Jan Kanis # Date 1404726650 -7200 # Node ID ed71448ee1548ff49be43cd4bfd26f138ede8e70 # Parent b3b5ee557170a415c35385a90888639b17afdba7 add new test files diff -r b3b5ee557170 -r ed71448ee154 test-data/blast xml example3b.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blast xml example3b.html Mon Jul 07 11:50:50 2014 +0200 @@ -0,0 +1,3509 @@ + + + + + + + Blast output + + + + + + + + + + +
+ +
+
This html page seems to have been stripped by Galaxy.
 + Disable Galaxy's html sanitization feature to view the full page (see sanitize_all_html in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy. +
+
+ +
+ + +
+

Queries

+ +
+ Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 1 hits) +
+
+ Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 1 hits) +
+
+ Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_3: Probe|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_3: Probe|NOST-Spec_(Genetic_ID) + (20 letters, 1 hits) +
+
+ Query_3: Probe|NOST-Spec_(Genetic_ID) + (20 letters, 1 hits) +
+
+ Query_3: Probe|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_3: Probe|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_3: Probe|NOST-Spec_(Genetic_ID) + (20 letters, 1 hits) +
+
+ Query_3: Probe|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_3: Probe|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (24 letters, 0 hits) +
+
+ Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (24 letters, 0 hits) +
+
+ Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (24 letters, 0 hits) +
+
+ Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (24 letters, 0 hits) +
+
+ Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (24 letters, 0 hits) +
+
+ Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (24 letters, 0 hits) +
+
+ Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (24 letters, 0 hits) +
+
+ Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (24 letters, 0 hits) +
+
+ Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (20 letters, 0 hits) +
+
+ Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (20 letters, 0 hits) +
+
+ Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (20 letters, 0 hits) +
+
+ Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (20 letters, 0 hits) +
+
+ Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (20 letters, 0 hits) +
+
+ Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (20 letters, 0 hits) +
+
+ Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (20 letters, 0 hits) +
+
+ Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (20 letters, 0 hits) +
+
+ Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R + (25 letters, 0 hits) +
+
+ Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R + (25 letters, 0 hits) +
+
+ Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R + (25 letters, 0 hits) +
+
+ Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R + (25 letters, 0 hits) +
+
+ Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R + (25 letters, 0 hits) +
+
+ Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R + (25 letters, 0 hits) +
+
+ Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R + (25 letters, 1 hits) +
+
+ Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R + (25 letters, 1 hits) +
+
+ Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R + (74 letters, 0 hits) +
+
+ Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R + (74 letters, 0 hits) +
+
+ Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R + (74 letters, 0 hits) +
+
+ Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R + (74 letters, 0 hits) +
+
+ Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R + (74 letters, 0 hits) +
+
+ Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R + (74 letters, 0 hits) +
+
+ Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R + (74 letters, 1 hits) +
+
+ Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R + (74 letters, 1 hits) +
+ +
+ + +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ + +
+

Graphic Summary

+ +
+

Distribution of 56 Blast Hits on the Query Sequence

+ +
+ Mouse-over to show defline and scores, click to show alignments +
+ +
+

Color key for alignment scores

+
+
<40
+
40–50
+
50–80
+
80–200
+
200≤
+
+
+ +
+ +
+
query:
+
+
+
+
2
+
+
+
4
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6
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20
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+
+
+
+
+ + +
+
+
+ + +
+
+
+
+ + + +
+

Descriptions

+ +
+

Sequences producing significant alignments:

+ + + + + + + + + + + + + + + + + + + + + +
DescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
37.437.4100%7.011e-08100%Subject_3
+ +
+
+ + + +
+

Alignments

+ +
+
+ +
+
Descriptions
+ Gene Bank +
+ +
+

DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000

+

+ Sequence ID: Subject_3 + Length: 323 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 200 to 219 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
37.4 bits(40)0.020/20(100%)0/20(0%)Plus/Plus
+ + 
Query        1  AGCGCGCAAACTAGGATAAA  20
+                ||||||||||||||||||||
+Subject    200  AGCGCGCAAACTAGGATAAA  219
+
+ +
+ +
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ + +
+

Graphic Summary

+ +
+

Distribution of 56 Blast Hits on the Query Sequence

+ +
+ Mouse-over to show defline and scores, click to show alignments +
+ +
+

Color key for alignment scores

+
+
<40
+
40–50
+
50–80
+
80–200
+
200≤
+
+
+ +
+ +
+
query:
+
+
+
+
2
+
+
+
4
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+
6
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8
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10
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20
+
+
+
+
+
+ + +
+
+
+ + +
+
+
+
+ + + +
+

Descriptions

+ +
+

Sequences producing significant alignments:

+ + + + + + + + + + + + + + + + + + + + + +
DescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
37.437.4100%7.011e-08100%Subject_6
+ +
+
+ + + +
+

Alignments

+ +
+
+ +
+
Descriptions
+ Gene Bank +
+ +
+

AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000

+

+ Sequence ID: Subject_6 + Length: 2457 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 2119 to 2138 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
37.4 bits(40)0.020/20(100%)0/20(0%)Plus/Plus
+ + 
Query        1  AGCGCGCAAACTAGGATAAA  20
+                ||||||||||||||||||||
+Subject   2119  AGCGCGCAAACTAGGATAAA  2138
+
+ +
+ +
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ + +
+

Graphic Summary

+ +
+

Distribution of 56 Blast Hits on the Query Sequence

+ +
+ Mouse-over to show defline and scores, click to show alignments +
+ +
+

Color key for alignment scores

+
+
<40
+
40–50
+
50–80
+
80–200
+
200≤
+
+
+ +
+ +
+
query:
+
+
+
+
2
+
+
+
4
+
+
+
6
+
+
+
8
+
+
+
10
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12
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14
+
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+
16
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+
18
+
+
+
20
+
+
+
+
+
+ + +
+
+
+
+ + +
+
+
+
+ + + +
+

Descriptions

+ +
+

Sequences producing significant alignments:

+ + + + + + + + + + + + + + + + + + + + + +
DescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
31.931.985%2.981e-06100%Subject_2
+ +
+
+ + + +
+

Alignments

+ +
+
+ +
+
Descriptions
+ Gene Bank +
+ +
+

AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000

+

+ Sequence ID: Subject_2 + Length: 1045 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 2 to 18 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
31.9 bits(34)0.017/17(100%)0/17(0%)Plus/Plus
+ + 
Query        4  GCGCGGTGTCATCTATG  20
+                |||||||||||||||||
+Subject      2  GCGCGGTGTCATCTATG  18
+
+ +
+ +
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ + +
+

Graphic Summary

+ +
+

Distribution of 56 Blast Hits on the Query Sequence

+ +
+ Mouse-over to show defline and scores, click to show alignments +
+ +
+

Color key for alignment scores

+
+
<40
+
40–50
+
50–80
+
80–200
+
200≤
+
+
+ +
+ +
+
query:
+
+
+
+
2
+
+
+
4
+
+
+
6
+
+
+
8
+
+
+
10
+
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+
12
+
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+
14
+
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+
16
+
+
+
18
+
+
+
20
+
+
+
+
+
+ + +
+
+
+ + +
+
+
+
+ + + +
+

Descriptions

+ +
+

Sequences producing significant alignments:

+ + + + + + + + + + + + + + + + + + + + + +
DescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
37.437.4100%7.011e-08100%Subject_3
+ +
+
+ + + +
+

Alignments

+ +
+
+ +
+
Descriptions
+ Gene Bank +
+ +
+

DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000

+

+ Sequence ID: Subject_3 + Length: 323 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 224 to 243 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
37.4 bits(40)0.020/20(100%)0/20(0%)Plus/Plus
+ + 
Query        1  CGCGCGCGGTGTCATCTATG  20
+                ||||||||||||||||||||
+Subject    224  CGCGCGCGGTGTCATCTATG  243
+
+ +
+ +
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ + +
+

Graphic Summary

+ +
+

Distribution of 56 Blast Hits on the Query Sequence

+ +
+ Mouse-over to show defline and scores, click to show alignments +
+ +
+

Color key for alignment scores

+
+
<40
+
40–50
+
50–80
+
80–200
+
200≤
+
+
+ +
+ +
+
query:
+
+
+
+
2
+
+
+
4
+
+
+
6
+
+
+
8
+
+
+
10
+
+
+
12
+
+
+
14
+
+
+
16
+
+
+
18
+
+
+
20
+
+
+
+
+
+ + +
+
+
+ + +
+
+
+
+ + + +
+

Descriptions

+ +
+

Sequences producing significant alignments:

+ + + + + + + + + + + + + + + + + + + + + +
DescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
37.437.4100%7.011e-08100%Subject_6
+ +
+
+ + + +
+

Alignments

+ +
+
+ +
+
Descriptions
+ Gene Bank +
+ +
+

AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000

+

+ Sequence ID: Subject_6 + Length: 2457 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 2143 to 2162 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
37.4 bits(40)0.020/20(100%)0/20(0%)Plus/Plus
+ + 
Query        1  CGCGCGCGGTGTCATCTATG  20
+                ||||||||||||||||||||
+Subject   2143  CGCGCGCGGTGTCATCTATG  2162
+
+ +
+ +
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (24 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (24 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (24 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (24 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (24 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (24 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (24 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (24 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (25 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (25 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (25 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (25 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (25 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (25 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (25 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ + +
+

Graphic Summary

+ +
+

Distribution of 56 Blast Hits on the Query Sequence

+ +
+ Mouse-over to show defline and scores, click to show alignments +
+ +
+

Color key for alignment scores

+
+
<40
+
40–50
+
50–80
+
80–200
+
200≤
+
+
+ +
+ +
+
query:
+
+
+
+
3
+
+
+
6
+
+
+
9
+
+
+
12
+
+
+
15
+
+
+
18
+
+
+
21
+
+
+
24
+
+
+
25
+
+
+
+
+
+ + +
+
+
+ + +
+
+
+
+ + + +
+

Descriptions

+ +
+

Sequences producing significant alignments:

+ + + + + + + + + + + + + + + + + + + + + +
DescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
37.437.4100%9.338e-0892%Subject_7
+ +
+
+ + + +
+

Alignments

+ +
+
+ +
+
Descriptions
+ Gene Bank +
+ +
+

AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000

+

+ Sequence ID: Subject_7 + Length: 4180 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 1541 to 1565 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
37.4 bits(40)0.023/25(92%)0/25(0%)Plus/Plus
+ + 
Query        1  ACATGAACAGCGCCTTGACCACAGC  25
+                |||||||||||||| ||||||| ||
+Subject   1541  ACATGAACAGCGCCCTGACCACCGC  1565
+
+ +
+ +
+
+
+ +
+ +

Nucleotide Sequence (25 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ + +
+

Graphic Summary

+ +
+

Distribution of 56 Blast Hits on the Query Sequence

+ +
+ Mouse-over to show defline and scores, click to show alignments +
+ +
+

Color key for alignment scores

+
+
<40
+
40–50
+
50–80
+
80–200
+
200≤
+
+
+ +
+ +
+
query:
+
+
+
+
3
+
+
+
6
+
+
+
9
+
+
+
12
+
+
+
15
+
+
+
18
+
+
+
21
+
+
+
24
+
+
+
25
+
+
+
+
+
+ + +
+
+
+ + +
+
+
+
+ + + +
+

Descriptions

+ +
+

Sequences producing significant alignments:

+ + + + + + + + + + + + + + + + + + + + + +
DescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
37.437.4100%9.338e-0892%Subject_8
+ +
+
+ + + +
+

Alignments

+ +
+
+ +
+
Descriptions
+ Gene Bank +
+ +
+

EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000

+

+ Sequence ID: Subject_8 + Length: 4983 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 2344 to 2368 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
37.4 bits(40)0.023/25(92%)0/25(0%)Plus/Plus
+ + 
Query        1  ACATGAACAGCGCCTTGACCACAGC  25
+                |||||||||||||| ||||||| ||
+Subject   2344  ACATGAACAGCGCCCTGACCACCGC  2368
+
+ +
+ +
+
+
+ +
+ +

Nucleotide Sequence (74 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (74 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (74 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (74 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (74 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (74 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (74 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ + +
+

Graphic Summary

+ +
+

Distribution of 56 Blast Hits on the Query Sequence

+ +
+ Mouse-over to show defline and scores, click to show alignments +
+ +
+

Color key for alignment scores

+
+
<40
+
40–50
+
50–80
+
80–200
+
200≤
+
+
+ +
+ +
+
query:
+
+
+
+
8
+
+
+
16
+
+
+
24
+
+
+
32
+
+
+
40
+
+
+
48
+
+
+
56
+
+
+
64
+
+
+
72
+
+
+
 
+
74
+
+
+
+
+
+ + +
+
+
+ + +
+
+
+
+ + + +
+

Descriptions

+ +
+

Sequences producing significant alignments:

+ + + + + + + + + + + + + + + + + + + + + +
DescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
89.789.7100%6.629e-2386%Subject_7
+ +
+
+ + + +
+

Alignments

+ +
+
+ +
+
Descriptions
+ Gene Bank +
+ +
+

AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000

+

+ Sequence ID: Subject_7 + Length: 4180 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 1516 to 1589 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
89.7 bits(98)0.064/74(86%)0/74(0%)Plus/Plus
+ + 
Query        1  GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG  60
+                ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | 
+Subject   1516  GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC  1575
+ 
Query       61  TTCGCAGTCCAGAA  74
+                ||||| ||||||||
+Subject   1576  TTCGCCGTCCAGAA  1589
+
+ +
+ +
+
+
+ +
+ +

Nucleotide Sequence (74 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:
+ +
+ + +
+

Graphic Summary

+ +
+

Distribution of 56 Blast Hits on the Query Sequence

+ +
+ Mouse-over to show defline and scores, click to show alignments +
+ +
+

Color key for alignment scores

+
+
<40
+
40–50
+
50–80
+
80–200
+
200≤
+
+
+ +
+ +
+
query:
+
+
+
+
8
+
+
+
16
+
+
+
24
+
+
+
32
+
+
+
40
+
+
+
48
+
+
+
56
+
+
+
64
+
+
+
72
+
+
+
 
+
74
+
+
+
+
+
+ + +
+
+
+ + +
+
+
+
+ + + +
+

Descriptions

+ +
+

Sequences producing significant alignments:

+ + + + + + + + + + + + + + + + + + + + + +
DescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
89.789.7100%6.629e-2386%Subject_8
+ +
+
+ + + +
+

Alignments

+ +
+
+ +
+
Descriptions
+ Gene Bank +
+ +
+

EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000

+

+ Sequence ID: Subject_8 + Length: 4983 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 2319 to 2392 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
89.7 bits(98)0.064/74(86%)0/74(0%)Plus/Plus
+ + 
Query        1  GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG  60
+                ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | 
+Subject   2319  GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC  2378
+ 
Query       61  TTCGCAGTCCAGAA  74
+                ||||| ||||||||
+Subject   2379  TTCGCCGTCCAGAA  2392
+
+ +
+ +
+
+
+ +
+ + + + + diff -r b3b5ee557170 -r ed71448ee154 test-data/blast xml example4b.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/blast xml example4b.html Mon Jul 07 11:50:50 2014 +0200 @@ -0,0 +1,1585 @@ + + + + + + + Blast output + + + + + + + + + + +
+ +
+
This html page seems to have been stripped by Galaxy.
 + Disable Galaxy's html sanitization feature to view the full page (see sanitize_all_html in your galaxy's universe_wsgi.ini), or download this page instead of viewing it in Galaxy. +
+
+ +
+ + +
+

Queries

+ +
+ Query_1: Forward_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 2 hits) +
+
+ Query_2: Reverse_Primer|NOST-Spec_(Genetic_ID) + (20 letters, 0 hits) +
+
+ Query_3: Probe|NOST-Spec_(Genetic_ID) + (20 letters, 3 hits) +
+
+ Query_4: Forward_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (24 letters, 0 hits) +
+
+ Query_5: Reverse_Primer|QL-ELE-Bt-F1(mod)/Bt-R + (20 letters, 0 hits) +
+
+ Query_6: Probe|QL-ELE-Bt-F1(mod)/Bt-R + (25 letters, 2 hits) +
+
+ Query_7: Amplicon|QL-ELE-Bt-F1(mod)/Bt-R + (74 letters, 2 hits) +
+ +
+ + +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:/opt/galaxy/blastdbs/EUginius_plasmid_insert
+ +
+ + +
+

Graphic Summary

+ +
+

Distribution of 7 Blast Hits on the Query Sequence

+ +
+ Mouse-over to show defline and scores, click to show alignments +
+ +
+

Color key for alignment scores

+
+
<40
+
40–50
+
50–80
+
80–200
+
200≤
+
+
+ +
+ +
+
query:
+
+
+
+
2
+
+
+
4
+
+
+
6
+
+
+
8
+
+
+
10
+
+
+
12
+
+
+
14
+
+
+
16
+
+
+
18
+
+
+
20
+
+
+
+
+
+ + +
+
+
+ + + +
+
+
+ + +
+
+
+
+ + + +
+

Descriptions

+ +
+

Sequences producing significant alignments:

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
DescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
40.140.1100%1.513e-07100%5
40.140.1100%1.513e-07100%2
+ +
+
+ + + +
+

Alignments

+ +
+
+ +
+
Descriptions
+ Gene Bank +
+ +
+

AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000

+

+ Sequence ID: gnl|BL_ORD_ID|5 + Length: 2457 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 2119 to 2138 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
40.1 bits(20)0.020/20(100%)0/20(0%)Plus/Plus
+ + 
Query        1  AGCGCGCAAACTAGGATAAA  20
+                ||||||||||||||||||||
+Subject   2119  AGCGCGCAAACTAGGATAAA  2138
+
+ +
+ +
+ +
+
Descriptions
+ Gene Bank +
+ +
+

DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000

+

+ Sequence ID: gnl|BL_ORD_ID|2 + Length: 323 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 200 to 219 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
40.1 bits(20)0.020/20(100%)0/20(0%)Plus/Plus
+ + 
Query        1  AGCGCGCAAACTAGGATAAA  20
+                ||||||||||||||||||||
+Subject    200  AGCGCGCAAACTAGGATAAA  219
+
+ +
+ +
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:/opt/galaxy/blastdbs/EUginius_plasmid_insert
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:/opt/galaxy/blastdbs/EUginius_plasmid_insert
+ +
+ + +
+

Graphic Summary

+ +
+

Distribution of 7 Blast Hits on the Query Sequence

+ +
+ Mouse-over to show defline and scores, click to show alignments +
+ +
+

Color key for alignment scores

+
+
<40
+
40–50
+
50–80
+
80–200
+
200≤
+
+
+ +
+ +
+
query:
+
+
+
+
2
+
+
+
4
+
+
+
6
+
+
+
8
+
+
+
10
+
+
+
12
+
+
+
14
+
+
+
16
+
+
+
18
+
+
+
20
+
+
+
+
+
+ + +
+
+
+ + + +
+
+
+ + + +
+
+
+
+ + +
+
+
+
+ + + +
+

Descriptions

+ +
+

Sequences producing significant alignments:

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
DescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
40.140.1100%1.513e-07100%5
40.140.1100%1.513e-07100%2
34.234.285%9.334e-06100%1
+ +
+
+ + + +
+

Alignments

+ +
+
+ +
+
Descriptions
+ Gene Bank +
+ +
+

AB209952.1|GenBank|insert_GTS-40-3-2|Glycine_max_transgenic_cp4epsps_gene_for_5-enol-pyruvylshikimate-3-phospate_synthase_class_2_precursor,_complete_cds|-9105899556052450000

+

+ Sequence ID: gnl|BL_ORD_ID|5 + Length: 2457 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 2143 to 2162 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
40.1 bits(20)0.020/20(100%)0/20(0%)Plus/Plus
+ + 
Query        1  CGCGCGCGGTGTCATCTATG  20
+                ||||||||||||||||||||
+Subject   2143  CGCGCGCGGTGTCATCTATG  2162
+
+ +
+ +
+ +
+
Descriptions
+ Gene Bank +
+ +
+

DJ437711|GenBank|insert_MIR604|Corn_Event_MIR604,_Left_Border_region|-5751164067366620000

+

+ Sequence ID: gnl|BL_ORD_ID|2 + Length: 323 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 224 to 243 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
40.1 bits(20)0.020/20(100%)0/20(0%)Plus/Plus
+ + 
Query        1  CGCGCGCGGTGTCATCTATG  20
+                ||||||||||||||||||||
+Subject    224  CGCGCGCGGTGTCATCTATG  243
+
+ +
+ +
+ +
+
Descriptions
+ Gene Bank +
+ +
+

AJ308515.1|GenBank|insert_GTS-40-3-2|Synthetic_construct_for_NOS_3'UTR/plant_junction_region.|-9105899556052450000

+

+ Sequence ID: gnl|BL_ORD_ID|1 + Length: 1045 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 2 to 18 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
34.2 bits(17)0.017/17(100%)0/17(0%)Plus/Plus
+ + 
Query        4  GCGCGGTGTCATCTATG  20
+                |||||||||||||||||
+Subject      2  GCGCGGTGTCATCTATG  18
+
+ +
+ +
+
+
+ +
+ +

Nucleotide Sequence (24 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:/opt/galaxy/blastdbs/EUginius_plasmid_insert
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (20 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:/opt/galaxy/blastdbs/EUginius_plasmid_insert
+ +
+ +
+

No Hits

+
+ + +
Message:No hits found
+
+
+
+ +
+ +

Nucleotide Sequence (25 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:/opt/galaxy/blastdbs/EUginius_plasmid_insert
+ +
+ + +
+

Graphic Summary

+ +
+

Distribution of 7 Blast Hits on the Query Sequence

+ +
+ Mouse-over to show defline and scores, click to show alignments +
+ +
+

Color key for alignment scores

+
+
<40
+
40–50
+
50–80
+
80–200
+
200≤
+
+
+ +
+ +
+
query:
+
+
+
+
3
+
+
+
6
+
+
+
9
+
+
+
12
+
+
+
15
+
+
+
18
+
+
+
21
+
+
+
24
+
+
+
25
+
+
+
+
+
+ + +
+
+
+
+ + + +
+
+
+
+ + +
+
+
+
+ + + +
+

Descriptions

+ +
+

Sequences producing significant alignments:

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
DescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
36.236.288%3.148e-0695%7
36.236.288%3.148e-0695%6
+ +
+
+ + + +
+

Alignments

+ +
+
+ +
+
Descriptions
+ Gene Bank +
+ +
+

EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000

+

+ Sequence ID: gnl|BL_ORD_ID|7 + Length: 4983 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 2344 to 2365 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
36.2 bits(18)0.021/22(95%)0/22(0%)Plus/Plus
+ + 
Query        1  ACATGAACAGCGCCTTGACCAC  22
+                |||||||||||||| |||||||
+Subject   2344  ACATGAACAGCGCCCTGACCAC  2365
+
+ +
+ +
+ +
+
Descriptions
+ Gene Bank +
+ +
+

AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000

+

+ Sequence ID: gnl|BL_ORD_ID|6 + Length: 4180 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 1541 to 1562 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
36.2 bits(18)0.021/22(95%)0/22(0%)Plus/Plus
+ + 
Query        1  ACATGAACAGCGCCTTGACCAC  22
+                |||||||||||||| |||||||
+Subject   1541  ACATGAACAGCGCCCTGACCAC  1562
+
+ +
+ +
+
+
+ +
+ +

Nucleotide Sequence (74 letters)

+ +
+ + + + + + + +
Query ID:Query_1
Query definition:Forward_Primer|NOST-Spec_(Genetic_ID)
Query length:20
Program:BLASTN 2.2.29+
Database:/opt/galaxy/blastdbs/EUginius_plasmid_insert
+ +
+ + +
+

Graphic Summary

+ +
+

Distribution of 7 Blast Hits on the Query Sequence

+ +
+ Mouse-over to show defline and scores, click to show alignments +
+ +
+

Color key for alignment scores

+
+
<40
+
40–50
+
50–80
+
80–200
+
200≤
+
+
+ +
+ +
+
query:
+
+
+
+
8
+
+
+
16
+
+
+
24
+
+
+
32
+
+
+
40
+
+
+
48
+
+
+
56
+
+
+
64
+
+
+
72
+
+
+
 
+
74
+
+
+
+
+
+ + +
+
+
+ + + +
+
+
+ + +
+
+
+
+ + + +
+

Descriptions

+ +
+

Sequences producing significant alignments:

+ + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
DescriptionMax scoreTotal scoreQuery coverE valueIdentAccession
67.967.9100%3.564e-1586%7
67.967.9100%3.564e-1586%6
+ +
+
+ + + +
+

Alignments

+ +
+
+ +
+
Descriptions
+ Gene Bank +
+ +
+

EUG|RIKILT|plasmid_pV-ZMBK07|plasmid_pV-ZMBK07|-2635190737607180000

+

+ Sequence ID: gnl|BL_ORD_ID|7 + Length: 4983 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 2319 to 2392 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
67.9 bits(34)0.064/74(86%)0/74(0%)Plus/Plus
+ + 
Query        1  GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG  60
+                ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | 
+Subject   2319  GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC  2378
+ 
Query       61  TTCGCAGTCCAGAA  74
+                ||||| ||||||||
+Subject   2379  TTCGCCGTCCAGAA  2392
+
+ +
+ +
+ +
+
Descriptions
+ Gene Bank +
+ +
+

AY326434|GenBank|insert_MON810|Synthetic_construct_truncated_CRYIA(b)_(cryIA(b))_gene,_partial_CDS|-2635190737607180000

+

+ Sequence ID: gnl|BL_ORD_ID|6 + Length: 4180 + Number of Matches: 1 +

+
+ + +
+

+ Range 1: 1589 to 1516 +

+ + + + + + + + + + + + +
ScoreExpectIdentitiesGapsStrand
67.9 bits(34)0.064/74(86%)0/74(0%)Plus/Minus
+ + 
Query        1  GAGGAAATGCGTATTCAATTCAACGACATGAACAGCGCCTTGACCACAGCTATCCCATTG  60
+                ||||| ||||| || || ||||||||||||||||||||| ||||||| || |||||| | 
+Subject   1589  GAGGAGATGCGCATCCAGTTCAACGACATGAACAGCGCCCTGACCACCGCCATCCCACTC  1530
+ 
Query       61  TTCGCAGTCCAGAA  74
+                ||||| ||||||||
+Subject   1529  TTCGCCGTCCAGAA  1516
+
+ +
+ +
+
+
+ +
+ + + + +