Nucleotide Sequence (16 letters)

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Nucleotide Sequence (16 letters)

RID

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-Other reports: - Search Summary - - - [Distance tree of results] - - - - -

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Search Parameters
Search parameter name	Search parameter value
Program	blastn
Word size	7
Expect value	1000
Hitlist size	100
Match/Mismatch scores	1,-3
Gapcosts	5,2
Filter string	F
Genetic Code	1

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Database
Database parameter name	Database parameter value
Posted date	Apr 29, 2014 3:14 AM
Number of letters	885,284
Number of sequences	8,975
Entrez query	none

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Karlin-Altschul statistics
Params	Ungapped	Gapped
Lambda	1.37406	1.37406
K	0.710603	0.710603
H	1.30725	1.30725

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Results Statistics
Results Statistics parameter name	Results Statistics parameter value
Length adjustment	11
Effective length of query	5
Effective length of database	786559
Effective search space	3932795
Effective search space used	3932795

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-An overview of the database sequences aligned to the query sequence is -shown. The score of each alignment is indicated by one of five -different colors, which divides the range of scores into five groups. -Multiple alignments on the same database sequence are connected -by a striped line. Mousing over a hit sequence causes the definition and score to be shown in the window at the top, -clicking on a hit sequence takes the user to the associated alignments. -New: -This graphic is an overview of database sequences aligned to the query sequence. -Alignments are color-coded by score, within one of five score ranges. -Multiple alignments on the same database sequence are connected by a dashed line. -Mousing over an alignment shows the alignment definition and score in the box at the top. -Clicking an alignment displays the alignment detail. -

Nucleotide Sequence (16 letters)

Nucleotide Sequence (16 letters)

Distribution of 45 Blast Hits on the Query Sequence [?]