Mercurial > repos > jankanis > blast2html

changeset 35:2b23b4a4d88e

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fix tool xml file name
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 15 May 2014 18:15:04 +0200
parents 5d7a82f49485
children 0f015cb32b93
files blast2html.xml tool_dependencies.xml
diffstat 2 files changed, 43 insertions(+), 43 deletions(-) [+]
line wrap: on
line diff
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/blast2html.xml	Thu May 15 18:15:04 2014 +0200
@@ -0,0 +1,43 @@
+<tool id="blast2html" name="blast2html" version="0.0.2">
+    
+    <description>Convert BLAST XML to HTML</description>
+    
+    <requirements>
+        <requirement type="python-module">jinja2</requirement>
+        <requirement type="python-module">lxml</requirement>
+    </requirements>
+    
+    <command interpreter="python">blast2html.py -i "${input}" -o "${output}"</command>
+    
+    <inputs>
+        <param format="blast" name="input" type="data" label="Source file"/>
+    </inputs>
+    
+    <outputs>
+        <data format="html" name="output" />
+    </outputs>
+    
+    <tests>
+        <test>
+            <param name="input" value="blast xml example1.xml"/>
+            <output name="out_file1" file="blast xml example1.html"/>
+        </test>
+        <test>
+            <param name="input" value="blast xml example2.xml"/>
+            <output name="out_file1" file="blast xml example2.html"/>
+        </test>
+        <test>
+            <param name="input" value="blast xml example3.xml"/>
+            <output name="out_file1" file="blast xml example3.html"/>
+        </test>
+        <test>
+            <param name="input" value="blast xml example4.xml"/>
+            <output name="out_file1" file="blast xml example4.html"/>
+        </test>
+    </tests>
+    
+    <help>
+        This tool converts the default BLAST XML result into a HTML document
+    </help>
+    
+</tool>
--- a/tool_dependencies.xml	Thu May 15 18:08:27 2014 +0200
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,43 +0,0 @@
-<tool id="blast2html" name="blast2html" version="0.0.2">
-    
-    <description>Convert BLAST XML to HTML</description>
-    
-    <requirements>
-        <requirement type="python-module">jinja2</requirement>
-        <requirement type="python-module">lxml</requirement>
-    </requirements>
-    
-    <command interpreter="python">blast2html.py -i "${input}" -o "${output}"</command>
-    
-    <inputs>
-        <param format="blast" name="input" type="data" label="Source file"/>
-    </inputs>
-    
-    <outputs>
-        <data format="html" name="output" />
-    </outputs>
-    
-    <tests>
-        <test>
-            <param name="input" value="blast xml example1.xml"/>
-            <output name="out_file1" file="blast xml example1.html"/>
-        </test>
-        <test>
-            <param name="input" value="blast xml example2.xml"/>
-            <output name="out_file1" file="blast xml example2.html"/>
-        </test>
-        <test>
-            <param name="input" value="blast xml example3.xml"/>
-            <output name="out_file1" file="blast xml example3.html"/>
-        </test>
-        <test>
-            <param name="input" value="blast xml example4.xml"/>
-            <output name="out_file1" file="blast xml example4.html"/>
-        </test>
-    </tests>
-    
-    <help>
-        This tool converts the default BLAST XML result into a HTML document
-    </help>
-    
-</tool>