Mercurial > repos > jankanis > blast2html

changeset 122:5f104d05aa23

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fix python 2.6 issue with array type codes
author Jan Kanis <jan.code@jankanis.nl>
date Thu, 31 Jul 2014 17:24:10 +0200
parents 2729c2326235
children 720efb818f1b
files blast2html.py
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/blast2html.py	Thu Jul 31 16:14:36 2014 +0200
+++ b/blast2html.py	Thu Jul 31 17:24:10 2014 +0200
@@ -328,9 +328,10 @@
         for hit in hits(result):
             hsps = hit.Hit_hsps.Hsp
 
-            cover = array('B', [0]) * query_length
+            # In python 2.6 array doesn't accept unicode type codes, but in 3.4 it requires them
+            cover = array(str('B'), [0]) * query_length
             for hsp in hsps:
-                cover[hsp['Hsp_query-from']-1 : int(hsp['Hsp_query-to'])] = array('B', [1]) * blastxml_len(hsp)
+                cover[hsp['Hsp_query-from']-1 : int(hsp['Hsp_query-to'])] = array(str('B'), [1]) * blastxml_len(hsp)
             cover_count = cover.count(1)
 
             best_hsp = max(hsps, key=lambda h: h['Hsp_bit-score'])