Mercurial > repos > jankanis > blast2html
changeset 123:720efb818f1b
really fix python 2.6 array type code issue
| author | Jan Kanis <jan.code@jankanis.nl> |
|---|---|
| date | Thu, 31 Jul 2014 18:40:28 +0200 |
| parents | 5f104d05aa23 |
| children | 6719353162b0 |
| files | blast2html.py |
| diffstat | 1 files changed, 3 insertions(+), 2 deletions(-) [+] |
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--- a/blast2html.py Thu Jul 31 17:24:10 2014 +0200 +++ b/blast2html.py Thu Jul 31 18:40:28 2014 +0200 @@ -329,9 +329,10 @@ hsps = hit.Hit_hsps.Hsp # In python 2.6 array doesn't accept unicode type codes, but in 3.4 it requires them - cover = array(str('B'), [0]) * query_length + typecode_B = builtin_str('B') + cover = array(typecode_B, [0]) * query_length for hsp in hsps: - cover[hsp['Hsp_query-from']-1 : int(hsp['Hsp_query-to'])] = array(str('B'), [1]) * blastxml_len(hsp) + cover[hsp['Hsp_query-from']-1 : int(hsp['Hsp_query-to'])] = array(typecode_B, [1]) * blastxml_len(hsp) cover_count = cover.count(1) best_hsp = max(hsps, key=lambda h: h['Hsp_bit-score'])