Mercurial > repos > jankanis > blast2html

changeset 92:dede77ad7069

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
update to latest zlib, remove workaround for missing zlib env variable
author Jan Kanis <jan.code@jankanis.nl>
date Tue, 24 Jun 2014 18:12:19 +0200
parents 20639b08d781
children 15b289ffdf2b
files tool_dependencies.xml
diffstat 1 files changed, 3 insertions(+), 4 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Jun 24 17:59:12 2014 +0200
+++ b/tool_dependencies.xml	Tue Jun 24 18:12:19 2014 +0200
@@ -12,7 +12,7 @@
 
   <package name="zlib" version="1.2.8">
     <repository name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True"
-                toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="31f1e69aae89" />
+                toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="63a4a902cda2" />
   </package>
 
   <package name="blast2html_venv" version="0.2">
@@ -28,7 +28,7 @@
             <package name="libxslt" version="1.1.28" />
           </repository>
           <repository name="package_zlib_1_2_8" owner="iuc"
-                      toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="31f1e69aae89">
+                      toolshed="http://toolshed.g2.bx.psu.edu" changeset_revision="63a4a902cda2">
             <package name="zlib" version="1.2.8" />
           </repository>
         </action>
@@ -42,12 +42,11 @@
 	<!-- install lxml manually, as the setup_virtualenv action does not include the environment
 	     from set_environment_for_install but shell_command does -->
 	<action type="shell_command">
-	  export LIBRARY_PATH="$ZLIB_ROOT_PATH/lib:$LIBRARY_PATH"
 	  $INSTALL_DIR/venv/bin/pip install lxml==3.3.5
 	</action>
 	
         <action type="set_environment">
-          <!-- add libxml2 library path so the runtime can find the shared library -->
+          <!-- add libxml2/zlib library paths so the runtime can find the shared libraries -->
           <environment_variable name="LD_LIBRARY_PATH" action="prepend_to">$ENV[LD_LIBRARY_PATH]</environment_variable>
         </action>
       </actions>