Mercurial > repos > jaredgk > ppp_vcfphase

comparison beagle.py @ 2:54c84f7dcb2c draft

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Uploaded
author jaredgk
date Wed, 17 Oct 2018 17:20:47 -0400
parents 3830d29fca6a
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1:15245deda141 2:54c84f7dcb2c
142 output_prefix : str 142 output_prefix : str
143 Output file prefix 143 Output file prefix
144 output_format : str 144 output_format : str
145 Output file format 145 Output file format
146 ''' 146 '''
147 print beagle_call_args 147 print (beagle_call_args)
148 # Standard call to beagle 148 # Standard call to beagle
149 standard_beagle_call(beagle_path, beagle_call_args, output_prefix) 149 standard_beagle_call(beagle_path, beagle_call_args, output_prefix)
150 150
151 # Decompress if a VCF files is requested 151 # Decompress if a VCF files is requested
152 if output_format == 'vcf': 152 if output_format == 'vcf':