annotate MatrixEQTL/man/MatrixEQTL-package.Rd @ 0:cd4c8e4a4b5b draft

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date Fri, 12 Mar 2021 08:12:46 +0000
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1 \name{MatrixEQTL-package}
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2 \alias{MatrixEQTL-package}
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3 \alias{MatrixEQTL}
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4 \docType{package}
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5 \title{
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6 Matrix eQTL: Ultra fast eQTL analysis via large matrix operations
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7 }
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8 \description{
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9 Matrix eQTL is designed for fast eQTL analysis of large datasets.
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10 Matrix eQTL can test for association between genotype and gene expression using linear regression
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11 with either additive or ANOVA (additive and dominant) genotype effects.
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12 The models can include covariates to account for such factors as population stratification, gender, clinical variables, and surrogate variables.
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13 Matrix eQTL also supports models with heteroscedastic and/or correlated errors,
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14 false discovery rate estimation and separate treatment of local (cis) and distant (trans) eQTLs.
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15 }
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16 \details{
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17 \tabular{ll}{
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18 Package: \tab MatrixEQTL\cr
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19 Type: \tab Package\cr
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20 Version: \tab 2.1.1\cr
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21 Date: \tab 2014-02-24\cr
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22 License: \tab LGPL-3 \cr
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23 LazyLoad: \tab yes\cr
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24 Depends: \tab methods\cr
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25 }
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26 }
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27 \author{
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28 Andrey Shabalin \email{ashabalin@vcu.edu}
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29
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30 Maintainer: Andrey Shabalin <ashabalin@vcu.edu>
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31 }
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32 \references{
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33 The package website: \url{http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/}
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34 }
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35 \keyword{ package }
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36 \keyword{ MatrixEQTL }
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37 \keyword{ Matrix eQTL }
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38 \seealso{
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39 See \code{\link{Matrix_eQTL_engine}} for reference and sample code.
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40 }