annotate MatrixEQTL/man/geneloc.Rd @ 4:cf4e9238644c draft default tip

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date Fri, 12 Mar 2021 08:23:32 +0000
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1 \name{geneloc}
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2 \alias{geneloc}
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3 \docType{data}
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4 \title{
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5 Artificial data for Matrix eQTL sample code: Gene location file.
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6 }
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7 \description{
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8 Artificial Gene location file for 10 genes.
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9 \tabular{llll}{
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10 geneid \tab chr \tab left \tab right \cr
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11 Gene_01 \tab chr1 \tab 721289 \tab 731289 \cr
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12 Gene_02 \tab chr1 \tab 752565 \tab 762565 \cr
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13 \ldots \tab \ldots \tab \ldots \tab \ldots \cr
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14 }
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15 }
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16 \format{
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17 A data frame with 4 columns.
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18 \describe{
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19 \item{\code{geneid}}{A column with gene names. The order does not have to match the gene expression data set.}
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20 \item{\code{chr}}{Chromosome number, i.e. chr1.}
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21 \item{\code{left}}{Lower (smaller) coordinate of the gene begining/end.}
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22 \item{\code{right}}{Upper (larger) coordinate of the gene begining/end.}
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23 }
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24 }
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25 \references{
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26 The package website: \url{http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/}
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27 }
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28 \seealso{
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29 See \code{\link{Matrix_eQTL_engine}} for reference and sample code.
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30 }
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31 \keyword{datasets}