Mercurial > repos > jasonxu > matrixeqtl
comparison MatrixEQTL/demo/00Index @ 0:cd4c8e4a4b5b draft
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| author | jasonxu |
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| date | Fri, 12 Mar 2021 08:12:46 +0000 |
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| -1:000000000000 | 0:cd4c8e4a4b5b |
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| 1 a.nocvrt Test that Matrix eQTL gives correct estimates for additive linear model. Homoscedastic case without covariates. | |
| 2 b.cvrt Test that Matrix eQTL gives correct estimates for additive linear model. Homoscedastic case with covariates. | |
| 3 c.weights Test that Matrix eQTL gives correct estimates for additive linear model. Heteroscedastic case with covariates. | |
| 4 d.ANOVA Test that Matrix eQTL gives correct estimates for ANOVA linear model with 3 groups. Heteroscedastic case with covariates. | |
| 5 d.ANOVA5 Test that Matrix eQTL gives correct estimates for ANOVA linear model with 5 groups. Heteroscedastic case with covariates. | |
| 6 e.interaction Test that Matrix eQTL gives correct estimates for linear model with genotype-covariate interaction. Heteroscedastic case with covariates. | |
| 7 p.hist Sample code for plotting histogram of p-values | |
| 8 q.qqplot Sample code for plotting QQ-plot of p-values | |
| 9 sample.all Sample code for eQTL analysis of the toy data set. | |
| 10 sample.cis Sample code for eQTL analysis of the toy data set with separate p-value thresholds and FDR estimation for cis- and trans-eQTLs. |