Mercurial > repos > jasonxu > matrixeqtl
diff MatrixEQTL/man/snpsloc.Rd @ 3:ae74f8fb3aef draft
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author | jasonxu |
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date | Fri, 12 Mar 2021 08:20:57 +0000 |
parents | cd4c8e4a4b5b |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/MatrixEQTL/man/snpsloc.Rd Fri Mar 12 08:20:57 2021 +0000 @@ -0,0 +1,30 @@ +\name{snpsloc} +\alias{snpsloc} +\docType{data} +\title{ + Artificial data for Matrix eQTL sample code: SNP location file. +} +\description{ + Artificial SNP location file for 15 markers. + \tabular{llll}{ + snpid \tab chr \tab pos \cr + Snp_01 \tab chr1 \tab 721289 \cr + Snp_02 \tab chr1 \tab 752565 \cr + \ldots \tab \ldots \tab \ldots \cr + } +} +\format{ + A data frame with 3 columns. + \describe{ + \item{\code{snpid}}{A column with SNP names. The order does not have to match the genotype data set.} + \item{\code{chr}}{Chromosome number, i.e. chr1.} + \item{\code{pos}}{Coordinate of the SNP.} + } +} +\references{ + The package website: \url{http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/} +} +\seealso{ + See \code{\link{Matrix_eQTL_engine}} for reference and sample code. +} +\keyword{datasets}