diff MatrixEQTL/man/snpsloc.Rd @ 0:cd4c8e4a4b5b draft

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author jasonxu
date Fri, 12 Mar 2021 08:12:46 +0000
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+++ b/MatrixEQTL/man/snpsloc.Rd	Fri Mar 12 08:12:46 2021 +0000
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+\name{snpsloc}
+\alias{snpsloc}
+\docType{data}
+\title{
+	Artificial data for Matrix eQTL sample code: SNP location file.
+}
+\description{
+	Artificial SNP location file for 15 markers. 
+	\tabular{llll}{
+		snpid   \tab chr   		\tab pos 	   \cr
+		Snp_01  \tab chr1     \tab 721289  \cr
+		Snp_02  \tab chr1     \tab 752565  \cr
+		\ldots  \tab \ldots   \tab \ldots  \cr
+	}
+}
+\format{
+  A data frame with 3 columns.
+  \describe{
+    \item{\code{snpid}}{A column with SNP names. The order does not have to match the genotype data set.}
+    \item{\code{chr}}{Chromosome number, i.e. chr1.}
+    \item{\code{pos}}{Coordinate of the SNP.}
+  }
+}
+\references{
+	The package website: \url{http://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/}
+}
+\seealso{
+	See \code{\link{Matrix_eQTL_engine}} for reference and sample code.
+}
+\keyword{datasets}