Mercurial > repos > jay > gaiac_sensor_performance_evaluation

comparison gaiac_boxplot/gaiac_boxplot.py @ 0:7c9552ed8676 draft

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planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
author jay
date Thu, 15 May 2025 14:46:49 +0000
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-1:000000000000 0:7c9552ed8676
1 import numpy as np
2 import pandas as pd
3 import matplotlib.pyplot as plt
4 import seaborn as sns
5 import argparse as argparse
6
7 def violinplot(infile,clm_list_y, custom_xtick_labels, outfile, plottitle,fig_height, fig_width, clm_lab_y, clm_lab_x):
8
9 df=pd.read_csv(infile, sep="\t")
10 cl = df.columns.tolist()
11 clms = [cl[int(x)-1] for x in clm_list_y.split(',')]
12
13 if custom_xtick_labels != None:
14 labels = custom_xtick_labels.split(',')
15 else:
16 labels = clms
17 plt.figure(figsize=(int(fig_height),int(fig_width)))
18 sns.set(font_scale=0.8,style='whitegrid')
19 fig=sns.boxplot(data=df[clms])
20 fig.set_ylabel(clm_lab_y)
21 fig.set_xlabel(clm_lab_x)
22 fig.set_xticklabels(labels)
23 fig.set_title(plottitle)
24 plt.tight_layout
25 plt.savefig(outfile,dpi=300,bbox_inches="tight")
26
27 if __name__=="__main__":
28
29 parser = argparse.ArgumentParser()
30 parser.add_argument("-I", "--infile", required=True, default=None, help=".tsv")
31 parser.add_argument("-C", "--column_list_y", required=False, default=False, help="Path to target tsv file")
32 parser.add_argument("-L", "--custom_xtick_name", required=False, default=None, help="Path to target tsv file")
33 parser.add_argument("-O", "--output", required=False, default='Out.png', help="Path to target tsv file")
34 parser.add_argument("-T", "--title", required=False, default='Time Series plot', help="Path to target tsv file")
35 parser.add_argument("-H", "--height", required=False, default='14', help="Path to target tsv file")
36 parser.add_argument("-W", "--width", required=False, default='12', help="Path to target tsv file")
37 parser.add_argument("-Y", "--ylab", required=False, default='Y label', help="Path to target tsv file")
38 parser.add_argument("-X", "--xlab", required=False, default='X label(time)', help="Path to target tsv file")
39 args = parser.parse_args()
40
41 violinplot(args.infile, args.column_list_y, args.custom_xtick_name, args.output, args.title, args.width, args.height, args.ylab, args.xlab)