Mercurial > repos > jay > gaiac_time_synchronization

annotate gaiac_boxplot/gaiac_boxplot.py @ 0:d3418b0d9b27 draft

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planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
author jay
date Thu, 15 May 2025 14:47:33 +0000
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d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
jay
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1 import numpy as np
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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2 import pandas as pd
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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3 import matplotlib.pyplot as plt
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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4 import seaborn as sns
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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5 import argparse as argparse
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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7 def violinplot(infile,clm_list_y, custom_xtick_labels, outfile, plottitle,fig_height, fig_width, clm_lab_y, clm_lab_x):
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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9 df=pd.read_csv(infile, sep="\t")
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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10 cl = df.columns.tolist()
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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11 clms = [cl[int(x)-1] for x in clm_list_y.split(',')]
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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13 if custom_xtick_labels != None:
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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14 labels = custom_xtick_labels.split(',')
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
jay
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15 else:
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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16 labels = clms
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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17 plt.figure(figsize=(int(fig_height),int(fig_width)))
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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18 sns.set(font_scale=0.8,style='whitegrid')
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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19 fig=sns.boxplot(data=df[clms])
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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20 fig.set_ylabel(clm_lab_y)
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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21 fig.set_xlabel(clm_lab_x)
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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22 fig.set_xticklabels(labels)
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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23 fig.set_title(plottitle)
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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24 plt.tight_layout
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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25 plt.savefig(outfile,dpi=300,bbox_inches="tight")
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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27 if __name__=="__main__":
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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29 parser = argparse.ArgumentParser()
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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30 parser.add_argument("-I", "--infile", required=True, default=None, help=".tsv")
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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31 parser.add_argument("-C", "--column_list_y", required=False, default=False, help="Path to target tsv file")
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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32 parser.add_argument("-L", "--custom_xtick_name", required=False, default=None, help="Path to target tsv file")
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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33 parser.add_argument("-O", "--output", required=False, default='Out.png', help="Path to target tsv file")
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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34 parser.add_argument("-T", "--title", required=False, default='Time Series plot', help="Path to target tsv file")
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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35 parser.add_argument("-H", "--height", required=False, default='14', help="Path to target tsv file")
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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36 parser.add_argument("-W", "--width", required=False, default='12', help="Path to target tsv file")
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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37 parser.add_argument("-Y", "--ylab", required=False, default='Y label', help="Path to target tsv file")
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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38 parser.add_argument("-X", "--xlab", required=False, default='X label(time)', help="Path to target tsv file")
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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39 args = parser.parse_args()
d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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d3418b0d9b27 planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
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41 violinplot(args.infile, args.column_list_y, args.custom_xtick_name, args.output, args.title, args.width, args.height, args.ylab, args.xlab)