Mercurial > repos > jay > gaiac_time_synchronization

comparison gaiac_time_series/gaiac_time_series.py @ 0:d3418b0d9b27 draft

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planemo upload for repository https://github.com/jaidevjoshi83/gaiac.git commit c29a769ed165f313a6410925be24f776652a9663-dirty
author jay
date Thu, 15 May 2025 14:47:33 +0000
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-1:000000000000 0:d3418b0d9b27
1 import numpy as np
2 import pandas as pd
3 import matplotlib.pyplot as plt
4 import seaborn as sns
5 import argparse
6 #%matplotlib inline
7
8 def timeseries(infile,clm_list_y, custom_legend_label, outfile, plottitle,fig_height, fig_width, clm_lab_y, clm_lab_x):
9
10 df=pd.read_csv(infile, sep="\t")
11
12 cl = df.columns.tolist()
13
14 clms = [cl[int(x)-1] for x in clm_list_y.split(',')]
15
16 if custom_legend_label != None:
17 labels = custom_legend_label.split(',')
18 else:
19 labels = clms
20
21 g=(df[clms].plot(figsize=(int(fig_height),int(fig_width))))
22 g.set(ylabel=clm_lab_y, xlabel=clm_lab_x)
23 plt.legend(labels, ncol=2, loc='upper right',prop={'size': 6})
24 plt.savefig(outfile,dpi=300,bbox_inches="tight")
25
26
27 if __name__=="__main__":
28
29 parser = argparse.ArgumentParser()
30 parser.add_argument("-I", "--infile", required=True, default=None, help="Input data file in TSV format.")
31 parser.add_argument("-C", "--column_list_y", required=False, default=False, help="Comma-separated list of column names for Y-axis data.")
32 parser.add_argument("-L", "--custom_legend_name", required=False, default=None, help="Custom legend names as a comma-separated list (optional).")
33 parser.add_argument("-O", "--output", required=False, default='Out.png', help="Filename for the output plot image (default: 'Out.png').")
34 parser.add_argument("-T", "--title", required=False, default='Time Series plot', help="Title of the plot (default: 'Time Series plot').")
35 parser.add_argument("-H", "--height", required=False, default='14', help="Height of the figure in inches (default: 14).")
36 parser.add_argument("-W", "--width", required=False, default='12', help="Width of the figure in inches (default: 12).")
37 parser.add_argument("-Y", "--ylab", required=False, default='Y label', help="Label for the Y-axis (default: 'Y label').")
38 parser.add_argument("-X", "--xlab", required=False, default='X label(time)', help="Label for the X-axis (default: 'X label(time)').")
39
40 args = parser.parse_args()
41
42 timeseries(args.infile, args.column_list_y, args.custom_legend_name, args.output, args.title, args.width, args.height, args.ylab, args.xlab)
43
44
45 #plt.show()