Mercurial > repos > jay > padaug_peptide_sequence_analysis

annotate PDAUG_AddClassLabel/PDAUG_AddClassLabel.py @ 1:aa0416e63597 draft default tip

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"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit 60abdf7f6fdc87e5be4ffb7fa5c9c8a458383047"
author jay
date Tue, 17 Nov 2020 23:11:37 +0000
parents 5d01ab729b2b
children
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5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
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1 import pandas as pd
5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
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2 import argparse
5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
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5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
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4 parser = argparse.ArgumentParser()
5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
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5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
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6 parser.add_argument("-I", "--InFile", required=True, default=None, help="Input data file")
5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
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7 parser.add_argument("-C", "--ClassLabel", required=False, default=0, help="Class Label 0 or 1")
5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
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8 parser.add_argument("-t", "--ClassLabelTitle", required=False, default='Class_label', help="Title to use for class label column (Class_label)")
5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
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9 parser.add_argument("-O", "--OutFile", required=False, default='OutFile.tsv', help="Output file name")
5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
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jay
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11 args = parser.parse_args()
5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
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5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
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13 df1 = pd.read_csv(args.InFile, sep="\t")
5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
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14 df2 = pd.DataFrame([args.ClassLabel]*df1.shape[0], columns=[args.ClassLabelTitle])
5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
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5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
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16 df = pd.concat([df1, df2], axis=1)
5d01ab729b2b "planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
jay
parents:
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17 df.to_csv(args.OutFile, sep="\t", index=False)