Mercurial > repos > jay > pdaug_basic_plots

comparison PDAUG_Basic_Plots/PDAUG_Basic_Plots.xml @ 6:738ee8fc0ede draft

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"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit e8c8198105af7eab636fb2405e5ff335539ca14b"
author jay
date Sun, 31 Jan 2021 02:02:32 +0000
parents 7d247e27ff11
children
comparison
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5:4c3242563796 6:738ee8fc0ede
192 * **WordCloud** Calculates the ngrams from the peptide data set and plot a word cloud for ngrams to assess frequency of ngrams visually. 192 * **WordCloud** Calculates the ngrams from the peptide data set and plot a word cloud for ngrams to assess frequency of ngrams visually.
193 193
194 ----- 194 -----
195 195
196 **Inputs** 196 **Inputs**
197 **1** HeatMap 197 **1** Heat Map
198 * **--Infile** Input data frame as a tabular file. 198 * **--Infile** Input data frame as a tabular file.
199 * **--IndexColumn** Number of sequence to be generated. 199 * **--IndexColumn** Number of sequence to be generated.
200 * **--x_label** Peptide minimum length. 200 * **--x_label** Peptide minimum length.
201 * **--y_label_s** Peptide maximum length. 201 * **--y_label_s** Peptide maximum length.
202 202
203 **2** BoxPlot 203 **2** Box Plot
204 * **--Infile** Input data frame as a tabular file. 204 * **--Infile** Input data frame as a tabular file.
205 * **--Feature** Feature(column name) to be assessed. 205 * **--Feature** Feature(column name) to be assessed.
206 * **--Label** Class label column name. 206 * **--Label** Class label column name.
207 207
208 **3** ScatterPlot 208 **3** Scatter Plot
209 * **--Infile** Input data frame as a tabular file. 209 * **--Infile** Input data frame as a tabular file.
210 * **--PlotType** 2D or 3D scatter plot. 210 * **--PlotType** 2D or 3D scatter plot.
211 * **--Feature1** First feature column name. 211 * **--Feature1** First feature column name.
212 * **--Feature2** Second feature column name. 212 * **--Feature2** Second feature column name.
213 * **--Feature3** Third feature column name if 3D scatter plot option selected. 213 * **--Feature3** Third feature column name if 3D scatter plot option selected.
214 * **--Label** CLass label column name. 214 * **--Label** CLass label column name.
215 215
216 **4** WordCloud 216 **4** Word Cloud
217 * **--Infile** Input fasta file with peptides. 217 * **--Infile** Input fasta file with peptides.
218 * **--FragSize** ngram size to be calculated. 218 * **--FragSize** ngram size to be calculated.
219 219
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221 221