Mercurial > repos > jay > pdaug_merge_dataframes

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"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit d396d7ff89705cc0dd626ed32c45a9f4029b1b05"
author jay
date Mon, 10 Jan 2022 04:23:30 +0000
parents b5a9f541c6f8
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1 <tool id="pdaug_merge_dataframes" name="PDAUG Merge Dataframes" version="0.1.0" python_template_version="3.5">
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3 <description>Merge two data frames</description>
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5 <requirements>
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6 <requirement version="0.24.2" type="package" >pandas </requirement>
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7 </requirements>
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10 <command detect_errors="exit_code"><![CDATA[
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11 python $__tool_directory__/PDAUG_Merge_Dataframes.py -I '$input1' -O '$output1'
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13 #if $selmethod.method == 'advance'
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14 -L "True"
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15 -C '$selmethod.classlabel'
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16 #end if
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18 ]]></command>
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19 <inputs>
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21 <param type="data" name="input1" label="Input files" format="tabular" multiple="true" help="Input tabular data files"/>
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23 <conditional name='selmethod' >
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24 <param name="method" type="select" label="Option to merg data" argument="--Method" help="Split file if class labels are present" >
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25 <option value="advance"> Merge data and add class labels</option>
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26 <option value="default" selected="true" > Merge data without adding class labels</option>
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27 </param>
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29 <when value="advance">
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30 <param name="classlabel" type="text" label="Name the column for class label" argument= "--SlcClassLabel" help="Select Class Label"/>
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31 </when>
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33 <when value="default">
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34 </when>
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35 </conditional>
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36 </inputs>
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37
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38 <outputs>
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39 <data name='output1' label="${tool.name} on $on_string - (tabular)" format='tabular' />
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40 </outputs>
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42 <tests>
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43 <test>
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44 <param name="method" value="advance"/>
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45 <param name="classlabel" value="class_label" />
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46 <param name="input1" value="1.tsv,2.tsv"/>
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47 <output name="output1" file="out1.tsv" />
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48 </test>
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49 <test>
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50 <param name="method" value="default" />
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51 <param name="input1" value="1.tsv,2.tsv"/>
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52 <output name="output1" file="out.tsv" />
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53 </test>
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54 </tests>
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55 <help><![CDATA[
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56 .. class:: infomark
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57
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58 **What it does**
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59
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60 This tool merges two data frames.
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61
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62 -----
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64 **Inputs**
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65 * Tabular data file (example input1.tsv and input2.tsv).
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66 * Option to merge data adds class label after merging the tabular data.
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67
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68 -----
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69
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70 **Outputs**
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71 * Returns merged tabular data file with or without class labels.
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72
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73
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74 ]]></help>
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75 <citations>
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76 <citation type="bibtex">
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77
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78 @misc{PDAUGGITHUB,
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79 author = {Joshi, Jayadev and Blankenberg, Daniel},
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80 year = {2020},
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81 title ={PDAUG - a Galaxy based toolset for peptide library analysis, visualization, and machine learning modeling},
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82 publisher = {GitHub},
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83 journal = {GitHub repository},
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84 url =
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85 {https://github.com/jaidevjoshi83/pdaug.git},
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86
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87 }</citation>
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88 </citations>
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89
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90 </tool>