Mercurial > repos > jay > pdaug_peptide_core_descriptors

comparison PDAUG_TSVtoFASTA/PDAUG_TSVtoFASTA.py @ 2:2d9dcbd68f6d draft

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"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit edb37634e419f75dd66292e712de51278746d883"
author jay
date Wed, 30 Dec 2020 03:09:35 +0000
parents dde9f94d41a8
children ea770264fac5
comparison
equal deleted inserted replaced
1:dde9f94d41a8 2:2d9dcbd68f6d
19 19
20 for line in lines[1:]: 20 for line in lines[1:]:
21 l.append(line.split('\t')[1].strip('\n').strip('\r')) 21 l.append(line.split('\t')[1].strip('\n').strip('\r'))
22 l = list(set(l)) 22 l = list(set(l))
23 23
24 print(l)
25
24 for line in lines: 26 for line in lines:
25 27
26 if l[0] in line.split('\t')[1].strip('\n').strip('\r'): 28 if l[1] in line.split('\t')[1].strip('\n').strip('\r'):
27 n= n+1 29 n= n+1
28 of1.write('>peptide_'+str(n)+'_'+str(l[0])+'\n') 30 of1.write('>peptide_'+str(n)+'_'+str(l[1])+'\n')
29 of1.write(line.split('\t')[0]+'\n') 31 of1.write(line.split('\t')[0]+'\n')
30 32
31 if l[1] in line.split('\t')[1].strip('\n').strip('\r'): 33 if l[0] in line.split('\t')[1].strip('\n').strip('\r'):
32 m= m+1 34 m= m+1
33 of2.write('>peptide_'+str(m)+'_'+str(l[1])+'\n') 35 of2.write('>peptide_'+str(m)+'_'+str(l[0])+'\n')
34 of2.write(line.split('\t')[0]+'\n') 36 of2.write(line.split('\t')[0]+'\n')
35 37
36 elif Method == 'NoClassLabel': 38 elif Method == 'NoClassLabel':
37 39
38 f = open(InFile) 40 f = open(InFile)