Mercurial > repos > jay > pdaug_peptide_core_functions
diff PDAUG_Peptide_Core_Functions/PDAUG_Peptide_Core_Functions.xml @ 6:6822d43a5f84 draft
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit e8c8198105af7eab636fb2405e5ff335539ca14b"
author | jay |
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date | Sun, 31 Jan 2021 02:17:01 +0000 |
parents | 562dc0806625 |
children | 851602577d38 |
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--- a/PDAUG_Peptide_Core_Functions/PDAUG_Peptide_Core_Functions.xml Thu Jan 28 04:02:31 2021 +0000 +++ b/PDAUG_Peptide_Core_Functions/PDAUG_Peptide_Core_Functions.xml Sun Jan 31 02:17:01 2021 +0000 @@ -36,9 +36,9 @@ <param name="CoreFunction" type="select" label="Analysis options" argument=""> <option value="mutateAA">Mutate Amino Acid</option> - <option value="filterduplicates">Filter Duplicates</option> - <option value="keepnaturalaa">Keep Naturalaa</option> - <option value="filteraa">Filter Amino Acid</option> + <option value="filterduplicates">Filter Duplicates Peptides</option> + <option value="keepnaturalaa">Remove Peptides With Unatural Amino Acids</option> + <option value="filteraa">Filter Peptides With Specific Amino Acid</option> </param> <when value="mutateAA"> @@ -94,8 +94,8 @@ This tool performs some core functions on the peptide sequences and equipped with various options - * **Mutated Amino Acid** Method to mutate with prob probability an nr of positions per sequence randomly. - * **Filter Duplicates** Method to filter duplicates in the sequences from the class attribute sequences. + * **Mutate Amino Acid** Method to mutate with prob probability an nr of positions per sequence randomly. + * **Filter Duplicates Peptides** Method to filter duplicates in the sequences from the class attribute sequences. * **Keep Naturalaa** Method to filter out sequences that do not contain natural amino acids. If the sequence contains a character. * **Filter Amino Acid** Method to filter out corresponding names and descriptor values of sequences with given amino acids in the argument list aminoacids. @@ -108,13 +108,13 @@ * **--nr** Number of mutations. * **--probability** Probability of mutating a sequence. - 2 **Filter Duplicates*** + 2 **Filter Duplicates Peptides*** * **--InFile** takes Fasta file with peptide sequences. - 3 **Keep Naturalaa** + 3 **Remove Peptides With Unatural Amino Acids** * **--InFile** takes Fasta file with peptide sequences. - 4 **Filter Amino Acid** + 4 **Filter Peptides With Specific Amino Acid** * **--InFile** takes Fasta file with peptide sequences. -----