Mercurial > repos > jay > pdaug_peptide_data_access

comparison PDAUG_Peptide_Data_Access/PDAUG_Peptide_Data_Access.xml @ 7:24184ea66557 draft

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"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit 32b9c48c81639a81be24bb3e2f48dc0a81c0deca"
author jay
date Sun, 09 Jan 2022 03:52:11 +0000
parents 20a0454c5347
children
comparison
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6:92bdc5cbf028 7:24184ea66557
11 </stdio> 11 </stdio>
12 <command detect_errors="exit_code"><![CDATA[ 12 <command detect_errors="exit_code"><![CDATA[
13 13
14 python '$__tool_directory__/PDAUG_Peptide_Data_Access.py' -d '$SelectDatasets.DataBaseType' -o '$output1' 14 python '$__tool_directory__/PDAUG_Peptide_Data_Access.py' -d '$SelectDatasets.DataBaseType' -o '$output1'
15 15
16 #if $SelectDatasets.DataBaseType == "AMPvsTMP"
17 -d 'AMPvsTMP'
18 #end if
19
20 #if $SelectDatasets.DataBaseType == "AMPvsUniProt"
21 -d 'AMPvsUniProt'
22 #end if
23
24 #if $SelectDatasets.DataBaseType == "ACPvsTMP"
25 -d 'ACPvsTMP'
26 #end if
27
28 #if $SelectDatasets.DataBaseType == "ACPvsRandom"
29 -d 'ACPvsRandom'
30 #end if
31
16 #if $SelectDatasets.DataBaseType == "query_apd" 32 #if $SelectDatasets.DataBaseType == "query_apd"
17 -L '$SelectDatasets.list1' 33 -L '$SelectDatasets.list1'
18 #end if 34 #end if
19 35
20 #if $SelectDatasets.DataBaseType == "query_camp" 36 #if $SelectDatasets.DataBaseType == "query_camp"
21 -L '$SelectDatasets.list2' 37 -L '$SelectDatasets.list1'
22 #end if 38 #end if
23 39
24 ]]></command> 40 ]]></command>
25 41
26 42
27 <inputs> 43 <inputs>
35 <option value="ACPvsRandom"> ACPvsRandom </option> 51 <option value="ACPvsRandom"> ACPvsRandom </option>
36 <option value="query_apd"> Query APD Database</option> 52 <option value="query_apd"> Query APD Database</option>
37 <option value="query_camp" > Query CAMP Database </option> 53 <option value="query_camp" > Query CAMP Database </option>
38 </param> 54 </param>
39 55
56 <when value="AMPvsTMP">
40 57
58 </when>
41 59
42 <when value="AMPvsTMP"/> 60 <when value="AMPvsUniProt">
43 <when value="AMPvsUniProt"/> 61
44 <when value="ACPvsTMP"/> 62 </when>
45 <when value="ACPvsRandom"/> 63
64 <when value="ACPvsTMP">
65 </when>
66
67 <when value="ACPvsRandom">
68 </when>
69
46 <when value="query_apd"> 70 <when value="query_apd">
47 <param name="list1" type='text' argument="-List" label="List of integers as IDs" help="List of integers as IDs" /> 71 <param name="list1" type='text' argument="-List" label="List of integers as IDs" help="List of integers as IDs" />
48 </when> 72 </when>
49 73
50 <when value="query_camp"> 74 <when value="query_camp">