Mercurial > repos > jay > pdaug_peptide_data_access

diff PDAUG_TSVtoFASTA/PDAUG_TSVtoFASTA.py @ 2:c9078a576efe draft

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"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit 8b18552f6d2b2261efebe1075ff4c18a295b94dd"
author jay
date Tue, 29 Dec 2020 18:26:34 +0000
parents f85327600c11
children 6e18702da4f6
line wrap: on
line diff
--- a/PDAUG_TSVtoFASTA/PDAUG_TSVtoFASTA.py	Tue Dec 29 04:11:02 2020 +0000
+++ b/PDAUG_TSVtoFASTA/PDAUG_TSVtoFASTA.py	Tue Dec 29 18:26:34 2020 +0000
@@ -21,14 +21,16 @@
             l.append(line.split('\t')[1].strip('\n').strip('\r'))
         l = list(set(l))
 
+        print(l)
+
         for line in lines:
 
-            if l[0] in line.split('\t')[1].strip('\n').strip('\r'):
+            if l[1] in line.split('\t')[1].strip('\n').strip('\r'):
                 n= n+1
                 of1.write('>peptide_'+str(n)+'_'+str(l[0])+'\n')
                 of1.write(line.split('\t')[0]+'\n')
 
-            if l[1] in line.split('\t')[1].strip('\n').strip('\r'):
+            if l[0] in line.split('\t')[1].strip('\n').strip('\r'):
                 m= m+1
                 of2.write('>peptide_'+str(m)+'_'+str(l[1])+'\n')
                 of2.write(line.split('\t')[0]+'\n')