Mercurial > repos > jay > pdaug_peptide_ngrams

diff PDAUG_Merge_Dataframes/PDAUG_Merge_Dataframes.py @ 0:7557b48b2872 draft

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"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
author jay
date Wed, 28 Oct 2020 02:10:12 +0000
parents
children cb2b359a6600
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/PDAUG_Merge_Dataframes/PDAUG_Merge_Dataframes.py	Wed Oct 28 02:10:12 2020 +0000
@@ -0,0 +1,28 @@
+import glob
+import pandas as pd 
+import sys
+
+files = sys.argv[1]
+out_file = sys.argv[2]
+
+
+data_frame = pd.read_csv(files.split(',')[0],sep='\t')
+
+
+for file in files.split(',')[1:]: 
+
+    df1 = pd.read_csv(file,sep='\t')
+    data_frame =  pd.concat([data_frame,df1])
+
+final_DF = data_frame.fillna(0)
+
+final_DF.to_csv(out_file,sep="\t", index=False)
+
+
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+