Mercurial > repos > jay > pdaug_peptide_ngrams
diff PDAUG_Merge_Dataframes/test-data/.ipynb_checkpoints/Untitled1-checkpoint.ipynb @ 0:7557b48b2872 draft
"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit a9bd83f6a1afa6338cb6e4358b63ebff5bed155e"
author | jay |
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date | Wed, 28 Oct 2020 02:10:12 +0000 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/PDAUG_Merge_Dataframes/test-data/.ipynb_checkpoints/Untitled1-checkpoint.ipynb Wed Oct 28 02:10:12 2020 +0000 @@ -0,0 +1,89 @@ +{ + "cells": [ + { + "cell_type": "code", + "execution_count": 42, + "metadata": {}, + "outputs": [ + { + "name": "stderr", + "output_type": "stream", + "text": [ + "Warning message in read.table(file = file, header = header, sep = sep, quote = quote, :\n", + "“incomplete final line found by readTableHeader on '/Users/joshij/Desktop/GitRepos/Peptide/align/New.csv'”\n" + ] + }, + { + "ename": "ERROR", + "evalue": "Error in data[[rowvar]]: attempt to select less than one element in get1index\n", + "output_type": "error", + "traceback": [ + "Error in data[[rowvar]]: attempt to select less than one element in get1index\nTraceback:\n", + "1. read.csv(\"/Users/joshij/Desktop/GitRepos/Peptide/align/New.csv\", \n . sep = \",\", header = TRUE, row.names = \"index\")", + "2. read.table(file = file, header = header, sep = sep, quote = quote, \n . dec = dec, fill = fill, comment.char = comment.char, ...)" + ] + } + ], + "source": [ + "m <- read.csv(\"/Users/joshij/Desktop/GitRepos/Peptide/align/New.csv\", sep=\",\",header=TRUE, row.names='index')\n", + "\n", + "\n", + "m <- as.matrix(read.table(\"/Users/joshij/Desktop/GitRepos/Peptide/align/New.csv\", sep=\",\", header=TRUE, row.names='index')[, 1:4])" + ] + }, + { + "cell_type": "code", + "execution_count": 38, + "metadata": {}, + "outputs": [], + "source": [ + "library(igraph)" + ] + }, + { + "cell_type": "code", + "execution_count": 40, + "metadata": {}, + "outputs": [ + { + "ename": "ERROR", + "evalue": "Error in mde(x): 'list' object cannot be coerced to type 'double'\n", + "output_type": "error", + "traceback": [ + "Error in mde(x): 'list' object cannot be coerced to type 'double'\nTraceback:\n", + "1. graph.adjacency(m, mode = \"undirected\", weighted = TRUE)", + "2. graph.adjacency.dense(adjmatrix, mode = mode, weighted = weighted, \n . diag = diag)", + "3. `mode<-`(`*tmp*`, value = \"double\")" + ] + } + ], + "source": [ + "m <- as.matrix(read.table(\"out_1.csv\", sep=\",\", header=TRUE, row.names='index')[, 1:4])" + ] + }, + { + "cell_type": "code", + "execution_count": null, + "metadata": {}, + "outputs": [], + "source": [] + } + ], + "metadata": { + "kernelspec": { + "display_name": "R", + "language": "R", + "name": "ir" + }, + "language_info": { + "codemirror_mode": "r", + "file_extension": ".r", + "mimetype": "text/x-r-source", + "name": "R", + "pygments_lexer": "r", + "version": "4.0.0" + } + }, + "nbformat": 4, + "nbformat_minor": 2 +}