Mercurial > repos > jay > pdaug_sequence_similarity_network

comparison PDAUG_Peptide_Core_Functions/PDAUG_Peptide_Core_Functions.py @ 6:1fafae68b9bb draft

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"planemo upload for repository https://github.com/jaidevjoshi83/pdaug commit 32b9c48c81639a81be24bb3e2f48dc0a81c0deca"
author jay
date Sun, 09 Jan 2022 03:41:43 +0000
parents e650de82bcc7
children
comparison
equal deleted inserted replaced
5:9012052b1dad 6:1fafae68b9bb
14 mutateAA.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Mutated output fasta") 14 mutateAA.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Mutated output fasta")
15 15
16 filterduplicates = subparsers.add_parser('filterduplicates') 16 filterduplicates = subparsers.add_parser('filterduplicates')
17 filterduplicates.add_argument("-I","--InFile", required=True, default=None, help="Input file") 17 filterduplicates.add_argument("-I","--InFile", required=True, default=None, help="Input file")
18 filterduplicates.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Output file") 18 filterduplicates.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Output file")
19 19 filterduplicates.add_argument("-A","--FilterAA", required=True, default=None, help="Filter amino acide")
20 20
21 keepnaturalaa = subparsers.add_parser('keepnaturalaa') 21 keepnaturalaa = subparsers.add_parser('keepnaturalaa')
22 keepnaturalaa.add_argument("-I","--InFile", required=True, default=None, help="Inputt file") 22 keepnaturalaa.add_argument("-I","--InFile", required=True, default=None, help="Inputt file")
23 keepnaturalaa.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Output file") 23 keepnaturalaa.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Output file")
24 24 keepnaturalaa.add_argument("-A","--FilterAA", required=True, default=None, help="Filter amino acide")
25 25
26 filteraa = subparsers.add_parser('filteraa') 26 filteraa = subparsers.add_parser('filteraa')
27 filteraa.add_argument("-I","--InFile", required=True, default=None, help="Input file") 27 filteraa.add_argument("-I","--InFile", required=True, default=None, help="Input file")
28 filteraa.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Output file") 28 filteraa.add_argument("-F","--FastOut", required=False, default='Out.fasta', help="Output file")
29 filteraa.add_argument("-A","--FilterAA", required=True, default=None, help="Filter amino acide") 29 filteraa.add_argument("-A","--FilterAA", required=True, default=None, help="Filter amino acide")